data_UKS # _chem_comp.id UKS _chem_comp.name "[(1R)-4-phenyl-1-{[N-(pyrazine-2-carbonyl)-D-norvalyl]amino}butyl]boronic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H27 B N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-05-20 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 398.264 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UKS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6X1M _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UKS C2 C1 C 0 1 N N R N N N 22.126 331.921 72.876 2.106 -0.905 0.216 C2 UKS 1 UKS C3 C2 C 0 1 N N N N N N 23.118 332.540 71.918 0.795 -0.173 0.336 C3 UKS 2 UKS C11 C3 C 0 1 N N N N N N 23.679 331.599 68.637 -3.993 -0.102 -0.012 C11 UKS 3 UKS C14 C4 C 0 1 Y N N N N N 21.513 334.111 75.917 5.527 0.733 -0.079 C14 UKS 4 UKS C17 C5 C 0 1 Y N N N N N 22.795 334.383 77.803 6.199 2.742 -0.954 C17 UKS 5 UKS C18 C6 C 0 1 Y N N N N N 21.780 335.131 78.382 7.512 2.449 -0.614 C18 UKS 6 UKS C20 C7 C 0 1 Y N N N N N 20.485 334.858 76.507 6.847 0.441 0.261 C20 UKS 7 UKS C21 C8 C 0 1 N N N N N N 23.220 329.933 71.783 3.296 -2.772 -0.943 C21 UKS 8 UKS C22 C9 C 0 1 N N N N N N 23.544 328.438 71.954 3.200 -3.810 -2.062 C22 UKS 9 UKS C23 C10 C 0 1 N N N N N N 23.435 330.869 67.316 -5.036 -0.805 -0.882 C23 UKS 10 UKS C24 C11 C 0 1 Y N N N N N 24.616 330.997 66.383 -6.316 -0.009 -0.873 C24 UKS 11 UKS C25 C12 C 0 1 Y N N N N N 25.738 331.718 66.772 -6.525 0.975 -1.822 C25 UKS 12 UKS C26 C13 C 0 1 Y N N N N N 26.813 331.834 65.902 -7.698 1.705 -1.814 C26 UKS 13 UKS C27 C14 C 0 1 Y N N N N N 26.769 331.224 64.650 -8.663 1.452 -0.857 C27 UKS 14 UKS C28 C15 C 0 1 Y N N N N N 25.649 330.508 64.258 -8.454 0.469 0.092 C28 UKS 15 UKS C29 C16 C 0 1 Y N N N N N 24.571 330.395 65.125 -7.283 -0.266 0.080 C29 UKS 16 UKS B9 B1 B 0 1 N N N N N N 23.410 335.289 69.819 -2.007 -0.025 2.249 B9 UKS 17 UKS C10 C17 C 0 1 N N N N N N 23.295 333.077 68.511 -2.694 -0.911 -0.021 C10 UKS 18 UKS C4 C18 C 0 1 N N N N N N 22.360 330.407 72.963 2.010 -1.944 -0.903 C4 UKS 19 UKS C7 C19 C 0 1 N N N N N N 21.386 333.542 74.551 4.449 -0.234 0.235 C7 UKS 20 UKS C8 C20 C 0 1 N N R N N N 23.579 333.729 69.869 -1.609 -0.141 0.735 C8 UKS 21 UKS N1 N1 N 0 1 N N N N N N 22.207 332.525 74.209 3.173 0.050 -0.094 N1 UKS 22 UKS N16 N2 N 0 1 Y N N N N N 22.641 333.893 76.592 5.238 1.883 -0.681 N16 UKS 23 UKS N19 N3 N 0 1 Y N N N N N 20.651 335.350 77.727 7.805 1.308 -0.016 N19 UKS 24 UKS N6 N4 N 0 1 N N N N N N 22.643 333.137 70.812 -0.334 -0.853 0.619 N6 UKS 25 UKS O12 O1 O 0 1 N N N N N N 22.033 335.620 69.847 -2.090 -1.193 3.053 O12 UKS 26 UKS O13 O2 O 0 1 N N N N N N 24.029 335.878 70.952 -2.285 1.248 2.815 O13 UKS 27 UKS O15 O3 O 0 1 N N N N N N 20.579 333.984 73.750 4.714 -1.281 0.790 O15 UKS 28 UKS O5 O4 O 0 1 N N N N N N 24.315 332.509 72.119 0.755 1.029 0.177 O5 UKS 29 UKS H1 H1 H 0 1 N N N N N N 21.115 332.084 72.475 2.330 -1.406 1.158 H1 UKS 30 UKS H2 H2 H 0 1 N N N N N N 23.071 331.133 69.426 -3.802 0.896 -0.407 H2 UKS 31 UKS H3 H3 H 0 1 N N N N N N 24.744 331.523 68.902 -4.365 -0.024 1.010 H3 UKS 32 UKS H4 H4 H 0 1 N N N N N N 23.711 334.203 78.346 5.964 3.676 -1.443 H4 UKS 33 UKS H5 H5 H 0 1 N N N N N N 21.912 335.537 79.374 8.297 3.156 -0.840 H5 UKS 34 UKS H6 H6 H 0 1 N N N N N N 19.563 335.032 75.972 7.087 -0.491 0.751 H6 UKS 35 UKS H7 H7 H 0 1 N N N N N N 24.156 330.510 71.756 3.432 -3.279 0.013 H7 UKS 36 UKS H8 H8 H 0 1 N N N N N N 22.669 330.084 70.843 4.146 -2.115 -1.129 H8 UKS 37 UKS H9 H9 H 0 1 N N N N N N 24.160 328.097 71.109 2.351 -4.467 -1.876 H9 UKS 38 UKS H10 H10 H 0 1 N N N N N N 24.095 328.288 72.894 3.065 -3.303 -3.017 H10 UKS 39 UKS H11 H11 H 0 1 N N N N N N 22.608 327.861 71.981 4.116 -4.400 -2.090 H11 UKS 40 UKS H12 H12 H 0 1 N N N N N N 22.547 331.299 66.829 -4.664 -0.883 -1.904 H12 UKS 41 UKS H13 H13 H 0 1 N N N N N N 23.259 329.803 67.524 -5.227 -1.803 -0.487 H13 UKS 42 UKS H14 H14 H 0 1 N N N N N N 25.773 332.185 67.745 -5.771 1.173 -2.570 H14 UKS 43 UKS H15 H15 H 0 1 N N N N N N 27.686 332.398 66.196 -7.861 2.474 -2.555 H15 UKS 44 UKS H16 H16 H 0 1 N N N N N N 27.613 331.310 63.981 -9.580 2.023 -0.850 H16 UKS 45 UKS H17 H17 H 0 1 N N N N N N 25.615 330.041 63.285 -9.208 0.271 0.840 H17 UKS 46 UKS H18 H18 H 0 1 N N N N N N 23.695 329.839 64.825 -7.120 -1.035 0.821 H18 UKS 47 UKS H19 H19 H 0 1 N N N N N N 23.898 333.559 67.727 -2.861 -1.873 0.464 H19 UKS 48 UKS H20 H20 H 0 1 N N N N N N 22.228 333.170 68.263 -2.374 -1.073 -1.050 H20 UKS 49 UKS H21 H21 H 0 1 N N N N N N 21.391 329.888 72.937 1.161 -2.601 -0.717 H21 UKS 50 UKS H22 H22 H 0 1 N N N N N N 22.876 330.173 73.906 1.875 -1.437 -1.859 H22 UKS 51 UKS H23 H23 H 0 1 N N N N N N 24.612 333.499 70.168 -1.508 0.857 0.308 H23 UKS 52 UKS H24 H24 H 0 1 N N N N N N 22.875 332.182 74.870 2.961 0.887 -0.537 H24 UKS 53 UKS H25 H25 H 0 1 N N N N N N 21.659 333.174 70.639 -0.302 -1.814 0.746 H25 UKS 54 UKS H26 H26 H 0 1 N N N N N N 21.933 336.564 69.817 -1.884 -2.011 2.580 H26 UKS 55 UKS H27 H27 H 0 1 N N N N N N 24.955 335.668 70.952 -2.279 1.972 2.175 H27 UKS 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UKS C28 C27 DOUB Y N 1 UKS C28 C29 SING Y N 2 UKS C27 C26 SING Y N 3 UKS C29 C24 DOUB Y N 4 UKS C26 C25 DOUB Y N 5 UKS C24 C25 SING Y N 6 UKS C24 C23 SING N N 7 UKS C23 C11 SING N N 8 UKS C10 C11 SING N N 9 UKS C10 C8 SING N N 10 UKS B9 O12 SING N N 11 UKS B9 C8 SING N N 12 UKS B9 O13 SING N N 13 UKS C8 N6 SING N N 14 UKS N6 C3 SING N N 15 UKS C21 C22 SING N N 16 UKS C21 C4 SING N N 17 UKS C3 O5 DOUB N N 18 UKS C3 C2 SING N N 19 UKS C2 C4 SING N N 20 UKS C2 N1 SING N N 21 UKS O15 C7 DOUB N N 22 UKS N1 C7 SING N N 23 UKS C7 C14 SING N N 24 UKS C14 C20 DOUB Y N 25 UKS C14 N16 SING Y N 26 UKS C20 N19 SING Y N 27 UKS N16 C17 DOUB Y N 28 UKS N19 C18 DOUB Y N 29 UKS C17 C18 SING Y N 30 UKS C2 H1 SING N N 31 UKS C11 H2 SING N N 32 UKS C11 H3 SING N N 33 UKS C17 H4 SING N N 34 UKS C18 H5 SING N N 35 UKS C20 H6 SING N N 36 UKS C21 H7 SING N N 37 UKS C21 H8 SING N N 38 UKS C22 H9 SING N N 39 UKS C22 H10 SING N N 40 UKS C22 H11 SING N N 41 UKS C23 H12 SING N N 42 UKS C23 H13 SING N N 43 UKS C25 H14 SING N N 44 UKS C26 H15 SING N N 45 UKS C27 H16 SING N N 46 UKS C28 H17 SING N N 47 UKS C29 H18 SING N N 48 UKS C10 H19 SING N N 49 UKS C10 H20 SING N N 50 UKS C4 H21 SING N N 51 UKS C4 H22 SING N N 52 UKS C8 H23 SING N N 53 UKS N1 H24 SING N N 54 UKS N6 H25 SING N N 55 UKS O12 H26 SING N N 56 UKS O13 H27 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UKS SMILES ACDLabs 12.01 "C(CCC)(NC(c1cnccn1)=O)C(=O)NC(B(O)O)CCCc2ccccc2" UKS InChI InChI 1.03 "InChI=1S/C20H27BN4O4/c1-2-7-16(24-20(27)17-14-22-12-13-23-17)19(26)25-18(21(28)29)11-6-10-15-8-4-3-5-9-15/h3-5,8-9,12-14,16,18,28-29H,2,6-7,10-11H2,1H3,(H,24,27)(H,25,26)/t16-,18+/m1/s1" UKS InChIKey InChI 1.03 KSQVGVMZECCPAT-AEFFLSMTSA-N UKS SMILES_CANONICAL CACTVS 3.385 "CCC[C@@H](NC(=O)c1cnccn1)C(=O)N[C@@H](CCCc2ccccc2)B(O)O" UKS SMILES CACTVS 3.385 "CCC[CH](NC(=O)c1cnccn1)C(=O)N[CH](CCCc2ccccc2)B(O)O" UKS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "B([C@H](CCCc1ccccc1)NC(=O)[C@@H](CCC)NC(=O)c2cnccn2)(O)O" UKS SMILES "OpenEye OEToolkits" 2.0.7 "B(C(CCCc1ccccc1)NC(=O)C(CCC)NC(=O)c2cnccn2)(O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier UKS "SYSTEMATIC NAME" ACDLabs 12.01 "[(1R)-4-phenyl-1-{[N-(pyrazine-2-carbonyl)-D-norvalyl]amino}butyl]boronic acid" UKS "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(1~{R})-4-phenyl-1-[[(2~{R})-2-(pyrazin-2-ylcarbonylamino)pentanoyl]amino]butyl]boronic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UKS "Create component" 2020-05-20 RCSB UKS "Initial release" 2021-04-14 RCSB UKS "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id UKS _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom B9 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #