data_ULU # _chem_comp.id ULU _chem_comp.name "~{N}-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl]amino]propyl]-3-[(azanylidene-$l^{4}-azanylidene)amino]propanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H38 N15 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-06 _chem_comp.pdbx_modified_date 2025-03-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 724.708 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ULU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 8QGH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ULU N1 N1 N 0 1 Y N N N N N 19.982 4.106 7.675 ? ? ? N1 ULU 1 ULU C7 C1 C 0 1 N N N N N N 14.372 9.767 10.594 ? ? ? C7 ULU 2 ULU C8 C2 C 0 1 N N N N N N 13.113 8.867 12.484 ? ? ? C8 ULU 3 ULU N2 N2 N 0 1 Y N N N N N 19.549 6.271 8.638 ? ? ? N2 ULU 4 ULU C9 C3 C 0 1 N N N N N N 12.538 7.756 11.620 ? ? ? C9 ULU 5 ULU O1 O1 O 0 1 N N N N N N 12.802 4.303 13.124 ? ? ? O1 ULU 6 ULU C1 C4 C 0 1 Y N N N N N 20.317 5.227 8.320 ? ? ? C1 ULU 7 ULU O5 O2 O 0 1 N N N N N N 19.345 9.464 16.272 ? ? ? O5 ULU 8 ULU C5 C5 C 0 1 N N S N N N 17.262 8.279 8.966 ? ? ? C5 ULU 9 ULU C6 C6 C 0 1 N N S N N N 15.735 9.712 9.932 ? ? ? C6 ULU 10 ULU N3 N3 N 0 1 Y N N N N N 17.236 6.956 8.351 ? ? ? N3 ULU 11 ULU C4 C7 C 0 1 Y N N N N N 17.798 4.990 7.537 ? ? ? C4 ULU 12 ULU O4 O3 O 0 1 N N N N N N 19.637 6.818 15.887 ? ? ? O4 ULU 13 ULU C3 C8 C 0 1 Y N N N N N 16.169 6.331 7.759 ? ? ? C3 ULU 14 ULU O3 O4 O 0 1 N N N N N N 16.444 7.611 13.071 ? ? ? O3 ULU 15 ULU C2 C9 C 0 1 Y N N N N N 18.294 6.091 8.214 ? ? ? C2 ULU 16 ULU N4 N4 N 0 1 Y N N N N N 16.449 5.154 7.257 ? ? ? N4 ULU 17 ULU N N5 N 0 1 N N N N N N 18.380 2.826 6.615 ? ? ? N ULU 18 ULU C C10 C 0 1 Y N N N N N 18.706 3.950 7.260 ? ? ? C ULU 19 ULU O O5 O 0 1 N N N N N N 16.222 8.358 9.923 ? ? ? O ULU 20 ULU C10 C11 C 0 1 N N N N N N 13.407 6.518 11.521 ? ? ? C10 ULU 21 ULU C11 C12 C 0 1 N N N N N N 13.672 5.087 13.494 ? ? ? C11 ULU 22 ULU C12 C13 C 0 1 N N N N N N 14.424 4.875 14.785 ? ? ? C12 ULU 23 ULU C13 C14 C 0 1 N N N N N N 14.813 3.422 14.997 ? ? ? C13 ULU 24 ULU C14 C15 C 0 1 N N N N N N 14.848 10.475 12.911 ? ? ? C14 ULU 25 ULU C15 C16 C 0 1 N N N N N N 16.307 10.668 12.958 ? ? ? C15 ULU 26 ULU C16 C17 C 0 1 N N N N N N 17.480 10.890 12.934 ? ? ? C16 ULU 27 ULU C17 C18 C 0 1 Y N N N N N 18.856 11.234 12.853 ? ? ? C17 ULU 28 ULU C18 C19 C 0 1 Y N N N N N 20.695 12.219 12.392 ? ? ? C18 ULU 29 ULU C19 C20 C 0 1 Y N N N N N 21.742 13.047 11.948 ? ? ? C19 ULU 30 ULU C20 C21 C 0 1 Y N N N N N 23.200 11.454 12.776 ? ? ? C20 ULU 31 ULU C21 C22 C 0 1 Y N N N N N 21.050 11.030 13.007 ? ? ? C21 ULU 32 ULU C22 C23 C 0 1 N N S N N N 19.730 9.076 13.911 ? ? ? C22 ULU 33 ULU C23 C24 C 0 1 N N S N N N 18.719 7.011 13.651 ? ? ? C23 ULU 34 ULU C24 C25 C 0 1 N N N N N N 17.428 6.590 12.989 ? ? ? C24 ULU 35 ULU C25 C26 C 0 1 N N S N N N 18.598 7.422 15.126 ? ? ? C25 ULU 36 ULU C26 C27 C 0 1 N N R N N N 18.765 8.944 15.080 ? ? ? C26 ULU 37 ULU C27 C28 C 0 1 N N S N N N 15.788 10.125 8.469 ? ? ? C27 ULU 38 ULU C28 C29 C 0 1 N N R N N N 17.069 9.440 7.972 ? ? ? C28 ULU 39 ULU N10 N6 N 0 1 Y N N N N N 19.316 12.343 12.309 ? ? ? N10 ULU 40 ULU N11 N7 N 0 1 N N N N N N 21.556 14.212 11.319 ? ? ? N11 ULU 41 ULU N12 N8 N 0 1 Y N N N N N 23.007 12.624 12.160 ? ? ? N12 ULU 42 ULU N13 N9 N 0 1 Y N N N N N 22.291 10.591 13.236 ? ? ? N13 ULU 43 ULU N14 N10 N 0 1 Y N N N N N 19.860 10.391 13.301 ? ? ? N14 ULU 44 ULU N5 N11 N 0 1 N N N N N N 14.396 9.412 12.018 ? ? ? N5 ULU 45 ULU N6 N12 N 0 1 N N N N N N 14.013 6.169 12.798 ? ? ? N6 ULU 46 ULU N7 N13 N 0 1 N N N N N N 15.753 3.003 13.939 ? ? ? N7 ULU 47 ULU N8 N14 N 0 1 N N N N N N 15.550 1.939 13.319 ? ? ? N8 ULU 48 ULU N9 N15 N 0 1 N N N N N N 15.186 0.948 12.878 ? ? ? N9 ULU 49 ULU O2 O6 O 0 1 N N N N N N 19.273 8.148 12.950 ? ? ? O2 ULU 50 ULU O6 O7 O 0 1 N N N N N N 15.866 11.541 8.341 ? ? ? O6 ULU 51 ULU O7 O8 O 0 1 N N N N N N 18.185 10.325 8.010 ? ? ? O7 ULU 52 ULU H8 H1 H 0 1 N N N N N N 13.979 10.790 10.497 ? ? ? H8 ULU 53 ULU H9 H2 H 0 1 N N N N N N 13.703 9.067 10.072 ? ? ? H9 ULU 54 ULU H10 H3 H 0 1 N N N N N N 13.259 8.470 13.499 ? ? ? H10 ULU 55 ULU H11 H4 H 0 1 N N N N N N 12.383 9.689 12.514 ? ? ? H11 ULU 56 ULU H12 H5 H 0 1 N N N N N N 11.567 7.460 12.043 ? ? ? H12 ULU 57 ULU H13 H6 H 0 1 N N N N N N 12.390 8.153 10.605 ? ? ? H13 ULU 58 ULU H6 H7 H 0 1 N N N N N N 21.350 5.298 8.626 ? ? ? H6 ULU 59 ULU H32 H8 H 0 1 N N N N N N 19.429 10.407 16.198 ? ? ? H32 ULU 60 ULU H H9 H 0 1 N N N N N N 18.232 8.420 9.465 ? ? ? H ULU 61 ULU H1 H10 H 0 1 N N N N N N 16.427 10.350 10.501 ? ? ? H1 ULU 62 ULU H30 H11 H 0 1 N N N N N N 19.555 7.077 16.797 ? ? ? H30 ULU 63 ULU H7 H12 H 0 1 N N N N N N 15.184 6.771 7.711 ? ? ? H7 ULU 64 ULU H28 H13 H 0 1 N N N N N N 15.646 7.317 12.647 ? ? ? H28 ULU 65 ULU H5 H14 H 0 1 N N N N N N 19.187 2.240 6.537 ? ? ? H5 ULU 66 ULU H4 H15 H 0 1 N N N N N N 17.666 2.345 7.124 ? ? ? H4 ULU 67 ULU H15 H16 H 0 1 N N N N N N 12.787 5.676 11.181 ? ? ? H15 ULU 68 ULU H14 H17 H 0 1 N N N N N N 14.206 6.704 10.788 ? ? ? H14 ULU 69 ULU H17 H18 H 0 1 N N N N N N 15.338 5.486 14.766 ? ? ? H17 ULU 70 ULU H18 H19 H 0 1 N N N N N N 13.786 5.196 15.622 ? ? ? H18 ULU 71 ULU H19 H20 H 0 1 N N N N N N 15.295 3.311 15.980 ? ? ? H19 ULU 72 ULU H20 H21 H 0 1 N N N N N N 13.912 2.792 14.957 ? ? ? H20 ULU 73 ULU H22 H22 H 0 1 N N N N N N 14.389 11.418 12.579 ? ? ? H22 ULU 74 ULU H21 H23 H 0 1 N N N N N N 14.502 10.237 13.928 ? ? ? H21 ULU 75 ULU H25 H24 H 0 1 N N N N N N 24.231 11.168 12.922 ? ? ? H25 ULU 76 ULU H2 H25 H 0 1 N N N N N N 20.722 8.761 14.265 ? ? ? H2 ULU 77 ULU H3 H26 H 0 1 N N N N N N 19.427 6.171 13.590 ? ? ? H3 ULU 78 ULU H27 H27 H 0 1 N N N N N N 17.625 6.368 11.930 ? ? ? H27 ULU 79 ULU H26 H28 H 0 1 N N N N N N 17.048 5.687 13.489 ? ? ? H26 ULU 80 ULU H29 H29 H 0 1 N N N N N N 17.602 7.160 15.512 ? ? ? H29 ULU 81 ULU H31 H30 H 0 1 N N N N N N 17.805 9.427 14.844 ? ? ? H31 ULU 82 ULU H33 H31 H 0 1 N N N N N N 14.917 9.721 7.932 ? ? ? H33 ULU 83 ULU H35 H32 H 0 1 N N N N N N 16.909 9.040 6.960 ? ? ? H35 ULU 84 ULU H23 H33 H 0 1 N N N N N N 22.443 14.613 11.090 ? ? ? H23 ULU 85 ULU H24 H34 H 0 1 N N N N N N 21.033 14.058 10.481 ? ? ? H24 ULU 86 ULU H16 H36 H 0 1 N N N N N N 14.719 6.771 13.170 ? ? ? H16 ULU 87 ULU H38 H37 H 0 1 N N N N N N 14.340 0.635 13.309 ? ? ? H38 ULU 88 ULU H34 H38 H 0 1 N N N N N N 15.898 11.775 7.421 ? ? ? H34 ULU 89 ULU H36 H39 H 0 1 N N N N N N 18.959 9.872 7.697 ? ? ? H36 ULU 90 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ULU N C SING N N 1 ULU C N1 DOUB Y N 2 ULU N1 C1 SING Y N 3 ULU C1 N2 DOUB Y N 4 ULU N2 C2 SING Y N 5 ULU C2 N3 SING Y N 6 ULU C3 N3 SING Y N 7 ULU N4 C3 DOUB Y N 8 ULU C4 N4 SING Y N 9 ULU C C4 SING Y N 10 ULU C2 C4 DOUB Y N 11 ULU N3 C5 SING N N 12 ULU C5 O SING N N 13 ULU O C6 SING N N 14 ULU C6 C7 SING N N 15 ULU C7 N5 SING N N 16 ULU N5 C8 SING N N 17 ULU C8 C9 SING N N 18 ULU C9 C10 SING N N 19 ULU C10 N6 SING N N 20 ULU N6 C11 SING N N 21 ULU O1 C11 DOUB N N 22 ULU C11 C12 SING N N 23 ULU C12 C13 SING N N 24 ULU C13 N7 SING N N 25 ULU N7 N8 DOUB N N 26 ULU N8 N9 DOUB N N 27 ULU C14 N5 SING N N 28 ULU C15 C14 SING N N 29 ULU C16 C15 TRIP N N 30 ULU C17 C16 SING N N 31 ULU C17 N10 DOUB Y N 32 ULU N10 C18 SING Y N 33 ULU C18 C19 DOUB Y N 34 ULU N11 C19 SING N N 35 ULU C19 N12 SING Y N 36 ULU N12 C20 DOUB Y N 37 ULU C20 N13 SING Y N 38 ULU N13 C21 DOUB Y N 39 ULU C18 C21 SING Y N 40 ULU C21 N14 SING Y N 41 ULU N14 C17 SING Y N 42 ULU C22 N14 SING N N 43 ULU C22 O2 SING N N 44 ULU O2 C23 SING N N 45 ULU C24 C23 SING N N 46 ULU O3 C24 SING N N 47 ULU C23 C25 SING N N 48 ULU O4 C25 SING N N 49 ULU C25 C26 SING N N 50 ULU C26 C22 SING N N 51 ULU O5 C26 SING N N 52 ULU C27 C6 SING N N 53 ULU O6 C27 SING N N 54 ULU C28 C27 SING N N 55 ULU C5 C28 SING N N 56 ULU O7 C28 SING N N 57 ULU C7 H8 SING N N 58 ULU C7 H9 SING N N 59 ULU C8 H10 SING N N 60 ULU C8 H11 SING N N 61 ULU C9 H12 SING N N 62 ULU C9 H13 SING N N 63 ULU C1 H6 SING N N 64 ULU O5 H32 SING N N 65 ULU C5 H SING N N 66 ULU C6 H1 SING N N 67 ULU O4 H30 SING N N 68 ULU C3 H7 SING N N 69 ULU O3 H28 SING N N 70 ULU N H5 SING N N 71 ULU N H4 SING N N 72 ULU C10 H15 SING N N 73 ULU C10 H14 SING N N 74 ULU C12 H17 SING N N 75 ULU C12 H18 SING N N 76 ULU C13 H19 SING N N 77 ULU C13 H20 SING N N 78 ULU C14 H22 SING N N 79 ULU C14 H21 SING N N 80 ULU C20 H25 SING N N 81 ULU C22 H2 SING N N 82 ULU C23 H3 SING N N 83 ULU C24 H27 SING N N 84 ULU C24 H26 SING N N 85 ULU C25 H29 SING N N 86 ULU C26 H31 SING N N 87 ULU C27 H33 SING N N 88 ULU C28 H35 SING N N 89 ULU N11 H23 SING N N 90 ULU N11 H24 SING N N 91 ULU N6 H16 SING N N 92 ULU N9 H38 SING N N 93 ULU O6 H34 SING N N 94 ULU O7 H36 SING N N 95 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ULU InChI InChI 1.06 "InChI=1S/C29H38N15O8/c30-24-18-26(36-11-34-24)43(13-38-18)28-22(49)20(47)14(51-28)9-42(8-2-5-33-17(46)4-6-39-41-32)7-1-3-16-40-19-25(31)35-12-37-27(19)44(16)29-23(50)21(48)15(10-45)52-29/h11-15,20-23,28-29,32,45,47-50H,2,4-10H2,(H,33,46)(H2,30,34,36)(H2,31,35,37)/t14-,15+,20+,21+,22+,23+,28-,29-/m0/s1" ULU InChIKey InChI 1.06 AQRCSRFKUBGJHG-CGQYPDDYSA-N ULU SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@H]3O[C@@H](CN(CCCNC(=O)CCN=[N]=N)CC#Cc4nc5c(N)ncnc5n4[C@H]6O[C@@H](CO)[C@@H](O)[C@H]6O)[C@@H](O)[C@H]3O" ULU SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CN(CCCNC(=O)CCN=[N]=N)CC#Cc4nc5c(N)ncnc5n4[CH]6O[CH](CO)[CH](O)[CH]6O)[CH](O)[CH]3O" ULU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CN(CCCNC(=O)CCN=[N]=N)CC#Cc4nc5c(ncnc5n4[C@H]6[C@@H]([C@@H]([C@H](O6)CO)O)O)N)O)O)N" ULU SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CN(CCCNC(=O)CCN=[N]=N)CC#Cc4nc5c(ncnc5n4C6C(C(C(O6)CO)O)O)N)O)O)N" # _pdbx_chem_comp_identifier.comp_id ULU _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl]amino]propyl]-3-[(azanylidene-$l^{4}-azanylidene)amino]propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ULU "Create component" 2023-09-06 PDBE ULU "Initial release" 2025-03-19 RCSB #