data_UM1 # _chem_comp.id UM1 _chem_comp.name "(2R)-2-[[(2R)-2-(2-aminoethanoylamino)propanoyl]amino]propanoic acid" _chem_comp.type "D-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C8 H15 N3 O4" _chem_comp.mon_nstd_parent_comp_id ALA _chem_comp.pdbx_synonyms glycyl-D-alanyl-D-alanine _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-03-24 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 217.222 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UM1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3GKR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UM1 NCF NCF N 0 1 N N N 12.194 5.328 21.881 5.714 -0.305 -0.260 NCF UM1 1 UM1 CCG CCG C 0 1 N N N 11.386 4.459 20.984 4.509 -0.705 0.480 CCG UM1 2 UM1 CCR CCR C 0 1 N N N 10.305 5.267 20.312 3.312 0.019 -0.081 CCR UM1 3 UM1 OCS OCS O 0 1 N N N 10.127 6.458 20.601 3.449 0.791 -1.006 OCS UM1 4 UM1 NCT NCT N 0 1 N N N 9.737 4.652 19.283 2.089 -0.193 0.445 NCT UM1 5 UM1 CCU CCU C 0 1 N N R 8.556 5.187 18.590 0.925 0.510 -0.101 CCU UM1 6 UM1 CCV CCV C 0 1 N N N 7.435 4.139 18.677 0.808 1.888 0.555 CCV UM1 7 UM1 CCW CCW C 0 1 N N N 8.921 5.461 17.144 -0.321 -0.288 0.181 CCW UM1 8 UM1 OCX OCX O 0 1 N N N 10.077 5.404 16.693 -0.245 -1.341 0.778 OCX UM1 9 UM1 NCY NCY N 0 1 N N N 7.904 5.938 16.466 -1.521 0.168 -0.232 NCY UM1 10 UM1 CCZ CCZ C 0 1 N N R 8.091 6.476 15.136 -2.733 -0.608 0.042 CCZ UM1 11 UM1 CDA CDA C 0 1 N N N 6.692 6.860 14.584 -2.922 -1.662 -1.051 CDA UM1 12 UM1 CDB CDB C 0 1 N N N 8.690 5.367 14.270 -3.925 0.313 0.063 CDB UM1 13 UM1 ODC ODC O 0 1 N N N 8.312 4.200 14.423 -3.778 1.497 -0.131 ODC UM1 14 UM1 ODB ODB O 0 1 N N N 9.518 5.753 13.401 -5.151 -0.181 0.297 ODB UM1 15 UM1 HNCF HNCF H 0 0 N N N 12.375 4.846 22.738 5.836 0.697 -0.238 HNCF UM1 16 UM1 HNCA HNCA H 0 0 N N N 13.061 5.553 21.435 6.531 -0.776 0.098 HNCA UM1 17 UM1 HCG HCG H 0 1 N N N 12.041 4.022 20.217 4.362 -1.780 0.382 HCG UM1 18 UM1 HCGA HCGA H 0 0 N N N 10.920 3.661 21.581 4.627 -0.449 1.533 HCGA UM1 19 UM1 HNCT HNCT H 0 0 N N N 10.129 3.788 18.965 1.980 -0.811 1.184 HNCT UM1 20 UM1 HCU HCU H 0 1 N N N 8.215 6.125 19.052 1.045 0.630 -1.178 HCU UM1 21 UM1 HCV HCV H 0 1 N N N 7.247 3.889 19.732 0.688 1.768 1.632 HCV UM1 22 UM1 HCVA HCVA H 0 0 N N N 6.517 4.546 18.228 1.710 2.465 0.351 HCVA UM1 23 UM1 HCVB HCVB H 0 0 N N N 7.738 3.232 18.133 -0.058 2.411 0.149 HCVB UM1 24 UM1 HNCY HNCY H 0 0 N N N 6.990 5.930 16.873 -1.582 1.010 -0.710 HNCY UM1 25 UM1 HCZ HCZ H 0 1 N N N 8.752 7.355 15.139 -2.638 -1.102 1.010 HCZ UM1 26 UM1 HDA HDA H 0 1 N N N 5.980 6.951 15.418 -2.059 -2.328 -1.066 HDA UM1 27 UM1 HDAA HDAA H 0 0 N N N 6.759 7.821 14.053 -3.823 -2.239 -0.847 HDAA UM1 28 UM1 HDAB HDAB H 0 0 N N N 6.345 6.080 13.890 -3.017 -1.169 -2.018 HDAB UM1 29 UM1 HODB HODB H 0 0 N N N 9.805 5.009 12.884 -5.885 0.449 0.301 HODB UM1 30 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UM1 NCF CCG SING N N 1 UM1 CCG CCR SING N N 2 UM1 CCR OCS DOUB N N 3 UM1 CCR NCT SING N N 4 UM1 NCT CCU SING N N 5 UM1 CCU CCV SING N N 6 UM1 CCU CCW SING N N 7 UM1 CCW OCX DOUB N N 8 UM1 CCW NCY SING N N 9 UM1 NCY CCZ SING N N 10 UM1 CCZ CDA SING N N 11 UM1 CCZ CDB SING N N 12 UM1 CDB ODC DOUB N N 13 UM1 CDB ODB SING N N 14 UM1 NCF HNCF SING N N 15 UM1 NCF HNCA SING N N 16 UM1 CCG HCG SING N N 17 UM1 CCG HCGA SING N N 18 UM1 NCT HNCT SING N N 19 UM1 CCU HCU SING N N 20 UM1 CCV HCV SING N N 21 UM1 CCV HCVA SING N N 22 UM1 CCV HCVB SING N N 23 UM1 NCY HNCY SING N N 24 UM1 CCZ HCZ SING N N 25 UM1 CDA HDA SING N N 26 UM1 CDA HDAA SING N N 27 UM1 CDA HDAB SING N N 28 UM1 ODB HODB SING N N 29 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UM1 SMILES ACDLabs 10.04 "O=C(NC(C(=O)O)C)C(NC(=O)CN)C" UM1 SMILES_CANONICAL CACTVS 3.341 "C[C@@H](NC(=O)[C@@H](C)NC(=O)CN)C(O)=O" UM1 SMILES CACTVS 3.341 "C[CH](NC(=O)[CH](C)NC(=O)CN)C(O)=O" UM1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@H](C(=O)N[C@H](C)C(=O)O)NC(=O)CN" UM1 SMILES "OpenEye OEToolkits" 1.5.0 "CC(C(=O)NC(C)C(=O)O)NC(=O)CN" UM1 InChI InChI 1.03 "InChI=1S/C8H15N3O4/c1-4(10-6(12)3-9)7(13)11-5(2)8(14)15/h4-5H,3,9H2,1-2H3,(H,10,12)(H,11,13)(H,14,15)/t4-,5-/m1/s1" UM1 InChIKey InChI 1.03 PYTZFYUXZZHOAD-RFZPGFLSSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier UM1 "SYSTEMATIC NAME" ACDLabs 10.04 glycyl-D-alanyl-D-alanine UM1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R)-2-[[(2R)-2-(2-aminoethanoylamino)propanoyl]amino]propanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UM1 "Create component" 2009-03-24 PDBJ UM1 "Modify descriptor" 2011-06-04 RCSB UM1 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id UM1 _pdbx_chem_comp_synonyms.name glycyl-D-alanyl-D-alanine _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##