data_UMN # _chem_comp.id UMN _chem_comp.name "2-[5-[5-chloranyl-2-(oxan-4-ylamino)pyrimidin-4-yl]-3-oxidanylidene-1~{H}-isoindol-2-yl]-~{N}-[(1~{S})-1-(hydroxymethyl)-2,3-dihydroinden-1-yl]ethanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H30 Cl N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-02 _chem_comp.pdbx_modified_date 2021-10-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 548.033 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UMN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7NQQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UMN C2 C1 C 0 1 N N N -1.010 7.196 48.439 -5.495 -2.152 0.687 C2 UMN 1 UMN C3 C2 C 0 1 N N S -0.092 8.352 48.879 -6.151 -0.797 0.416 C3 UMN 2 UMN C5 C3 C 0 1 N N N -0.350 8.186 51.252 -7.583 -0.310 2.287 C5 UMN 3 UMN C6 C4 C 0 1 Y N N -1.170 9.344 50.758 -8.421 -0.706 1.090 C6 UMN 4 UMN C7 C5 C 0 1 Y N N -1.962 10.253 51.439 -9.795 -0.812 0.953 C7 UMN 5 UMN C8 C6 C 0 1 Y N N -2.639 11.245 50.747 -10.345 -1.198 -0.254 C8 UMN 6 UMN C10 C7 C 0 1 Y N N -1.690 10.447 48.695 -8.152 -1.373 -1.194 C10 UMN 7 UMN C11 C8 C 0 1 Y N N -1.031 9.445 49.382 -7.599 -0.986 0.015 C11 UMN 8 UMN C13 C9 C 0 1 N N N 1.866 8.335 47.381 -4.154 0.320 -0.420 C13 UMN 9 UMN C15 C10 C 0 1 N N N 2.358 8.740 46.010 -3.444 1.158 -1.452 C15 UMN 10 UMN C19 C11 C 0 1 Y N N 7.182 10.177 45.821 0.697 3.287 0.721 C19 UMN 11 UMN C21 C12 C 0 1 Y N N 8.330 8.196 45.062 2.451 1.752 0.121 C21 UMN 12 UMN C22 C13 C 0 1 Y N N 7.108 7.510 45.066 1.532 0.958 -0.556 C22 UMN 13 UMN C23 C14 C 0 1 Y N N 5.949 8.172 45.423 0.190 1.335 -0.598 C23 UMN 14 UMN C24 C15 C 0 1 N N N 4.551 7.695 45.499 -0.995 0.716 -1.222 C24 UMN 15 UMN C26 C16 C 0 1 Y N N 9.604 7.523 44.701 3.879 1.357 0.169 C26 UMN 16 UMN C28 C17 C 0 1 Y N N 11.614 7.674 43.592 5.497 -0.284 0.280 C28 UMN 17 UMN C31 C18 C 0 1 N N N 13.456 10.480 42.069 7.330 -3.412 1.079 C31 UMN 18 UMN C35 C19 C 0 1 N N N 11.459 9.547 40.876 7.777 -2.148 -1.025 C35 UMN 19 UMN C37 C20 C 0 1 Y N N 11.212 5.769 44.791 6.205 1.908 0.195 C37 UMN 20 UMN C38 C21 C 0 1 Y N N 9.983 6.267 45.155 4.886 2.326 0.148 C38 UMN 21 UMN O1 O1 O 0 1 N N N -1.825 7.563 47.336 -5.440 -2.906 -0.525 O1 UMN 22 UMN C4 C22 C 0 1 N N N 0.677 8.021 50.179 -6.196 0.045 1.709 C4 UMN 23 UMN C9 C23 C 0 1 Y N N -2.502 11.344 49.375 -9.523 -1.478 -1.329 C9 UMN 24 UMN N12 N1 N 0 1 N N N 0.674 8.793 47.715 -5.423 -0.081 -0.634 N12 UMN 25 UMN O14 O2 O 0 1 N N N 2.540 7.630 48.122 -3.583 0.007 0.603 O14 UMN 26 UMN N16 N2 N 0 1 N N N 3.807 8.760 45.917 -2.089 1.462 -0.987 N16 UMN 27 UMN C17 C24 C 0 1 N N N 4.591 9.971 46.142 -1.702 2.628 -0.185 C17 UMN 28 UMN C18 C25 C 0 1 Y N N 5.982 9.502 45.812 -0.216 2.507 0.047 C18 UMN 29 UMN C20 C26 C 0 1 Y N N 8.345 9.534 45.457 2.029 2.919 0.760 C20 UMN 30 UMN O25 O3 O 0 1 N N N 4.104 6.578 45.243 -0.984 -0.319 -1.859 O25 UMN 31 UMN N27 N3 N 0 1 Y N N 10.434 8.236 43.915 4.223 0.072 0.237 N27 UMN 32 UMN N29 N4 N 0 1 N N N 12.441 8.378 42.796 5.819 -1.628 0.351 N29 UMN 33 UMN C30 C27 C 0 1 N N N 12.170 9.684 42.226 7.223 -2.043 0.400 C30 UMN 34 UMN C32 C28 C 0 1 N N N 13.209 11.768 41.295 8.790 -3.873 1.054 C32 UMN 35 UMN O33 O4 O 0 1 N N N 12.616 11.503 40.007 9.251 -3.919 -0.297 O33 UMN 36 UMN C34 C29 C 0 1 N N N 11.334 10.886 40.173 9.219 -2.657 -0.968 C34 UMN 37 UMN N36 N5 N 0 1 Y N N 12.038 6.459 44.005 6.472 0.613 0.257 N36 UMN 38 UMN CL39 CL1 CL 0 0 N N N 8.949 5.329 46.189 4.491 4.015 0.065 CL39 UMN 39 UMN H42 H1 H 0 1 N N N -1.657 6.914 49.282 -4.484 -1.997 1.065 H42 UMN 40 UMN H41 H2 H 0 1 N N N -0.387 6.336 48.152 -6.079 -2.697 1.428 H41 UMN 41 UMN H46 H3 H 0 1 N N N -0.966 7.280 51.353 -8.019 0.557 2.783 H46 UMN 42 UMN H45 H4 H 0 1 N N N 0.121 8.419 52.218 -7.502 -1.144 2.984 H45 UMN 43 UMN H47 H5 H 0 1 N N N -2.053 10.189 52.513 -10.439 -0.594 1.792 H47 UMN 44 UMN H48 H6 H 0 1 N N N -3.272 11.939 51.279 -11.417 -1.280 -0.357 H48 UMN 45 UMN H50 H7 H 0 1 N N N -1.573 10.532 47.625 -7.510 -1.592 -2.034 H50 UMN 46 UMN H52 H8 H 0 1 N N N 1.977 9.747 45.783 -3.392 0.609 -2.392 H52 UMN 47 UMN H53 H9 H 0 1 N N N 1.968 8.025 45.271 -3.993 2.088 -1.605 H53 UMN 48 UMN H56 H10 H 0 1 N N N 7.212 11.216 46.115 0.373 4.190 1.216 H56 UMN 49 UMN H58 H11 H 0 1 N N N 7.072 6.466 44.791 1.857 0.055 -1.052 H58 UMN 50 UMN H61 H12 H 0 1 N N N 14.193 9.870 41.526 6.990 -3.335 2.111 H61 UMN 51 UMN H62 H13 H 0 1 N N N 13.849 10.729 43.066 6.711 -4.133 0.544 H62 UMN 52 UMN H67 H14 H 0 1 N N N 10.452 9.136 41.043 7.167 -2.843 -1.602 H67 UMN 53 UMN H68 H15 H 0 1 N N N 12.034 8.861 40.237 7.755 -1.165 -1.497 H68 UMN 54 UMN H69 H16 H 0 1 N N N 11.515 4.797 45.150 7.008 2.631 0.181 H69 UMN 55 UMN H40 H17 H 0 1 N N N -2.377 6.829 47.091 -5.034 -3.779 -0.428 H40 UMN 56 UMN H44 H18 H 0 1 N N N 1.059 6.990 50.157 -5.403 -0.254 2.394 H44 UMN 57 UMN H43 H19 H 0 1 N N N 1.514 8.719 50.327 -6.132 1.109 1.480 H43 UMN 58 UMN H49 H20 H 0 1 N N N -3.026 12.118 48.833 -9.951 -1.780 -2.273 H49 UMN 59 UMN H51 H21 H 0 1 N N N 0.265 9.493 47.129 -5.853 0.104 -1.484 H51 UMN 60 UMN H54 H22 H 0 1 N N N 4.519 10.307 47.187 -1.922 3.546 -0.729 H54 UMN 61 UMN H55 H23 H 0 1 N N N 4.273 10.784 45.473 -2.233 2.620 0.767 H55 UMN 62 UMN H57 H24 H 0 1 N N N 9.281 10.073 45.478 2.744 3.535 1.285 H57 UMN 63 UMN H59 H25 H 0 1 N N N 12.621 7.783 42.013 5.115 -2.296 0.369 H59 UMN 64 UMN H60 H26 H 0 1 N N N 11.505 10.239 42.904 7.802 -1.311 0.963 H60 UMN 65 UMN H63 H27 H 0 1 N N N 14.168 12.286 41.148 9.401 -3.173 1.624 H63 UMN 66 UMN H64 H28 H 0 1 N N N 12.531 12.410 41.876 8.865 -4.866 1.498 H64 UMN 67 UMN H66 H29 H 0 1 N N N 10.692 11.548 40.772 9.604 -2.774 -1.981 H66 UMN 68 UMN H65 H30 H 0 1 N N N 10.879 10.731 39.184 9.836 -1.941 -0.425 H65 UMN 69 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UMN O33 C34 SING N N 1 UMN O33 C32 SING N N 2 UMN C34 C35 SING N N 3 UMN C35 C30 SING N N 4 UMN C32 C31 SING N N 5 UMN C31 C30 SING N N 6 UMN C30 N29 SING N N 7 UMN N29 C28 SING N N 8 UMN C28 N27 DOUB Y N 9 UMN C28 N36 SING Y N 10 UMN N27 C26 SING Y N 11 UMN N36 C37 DOUB Y N 12 UMN C26 C21 SING N N 13 UMN C26 C38 DOUB Y N 14 UMN C37 C38 SING Y N 15 UMN C21 C22 DOUB Y N 16 UMN C21 C20 SING Y N 17 UMN C22 C23 SING Y N 18 UMN C38 CL39 SING N N 19 UMN O25 C24 DOUB N N 20 UMN C23 C24 SING N N 21 UMN C23 C18 DOUB Y N 22 UMN C20 C19 DOUB Y N 23 UMN C24 N16 SING N N 24 UMN C18 C19 SING Y N 25 UMN C18 C17 SING N N 26 UMN N16 C15 SING N N 27 UMN N16 C17 SING N N 28 UMN C15 C13 SING N N 29 UMN O1 C2 SING N N 30 UMN C13 N12 SING N N 31 UMN C13 O14 DOUB N N 32 UMN N12 C3 SING N N 33 UMN C2 C3 SING N N 34 UMN C10 C9 DOUB Y N 35 UMN C10 C11 SING Y N 36 UMN C3 C11 SING N N 37 UMN C3 C4 SING N N 38 UMN C9 C8 SING Y N 39 UMN C11 C6 DOUB Y N 40 UMN C4 C5 SING N N 41 UMN C8 C7 DOUB Y N 42 UMN C6 C5 SING N N 43 UMN C6 C7 SING Y N 44 UMN C2 H42 SING N N 45 UMN C2 H41 SING N N 46 UMN C5 H46 SING N N 47 UMN C5 H45 SING N N 48 UMN C7 H47 SING N N 49 UMN C8 H48 SING N N 50 UMN C10 H50 SING N N 51 UMN C15 H52 SING N N 52 UMN C15 H53 SING N N 53 UMN C19 H56 SING N N 54 UMN C22 H58 SING N N 55 UMN C31 H61 SING N N 56 UMN C31 H62 SING N N 57 UMN C35 H67 SING N N 58 UMN C35 H68 SING N N 59 UMN C37 H69 SING N N 60 UMN O1 H40 SING N N 61 UMN C4 H44 SING N N 62 UMN C4 H43 SING N N 63 UMN C9 H49 SING N N 64 UMN N12 H51 SING N N 65 UMN C17 H54 SING N N 66 UMN C17 H55 SING N N 67 UMN C20 H57 SING N N 68 UMN N29 H59 SING N N 69 UMN C30 H60 SING N N 70 UMN C32 H63 SING N N 71 UMN C32 H64 SING N N 72 UMN C34 H66 SING N N 73 UMN C34 H65 SING N N 74 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UMN InChI InChI 1.03 "InChI=1S/C29H30ClN5O4/c30-24-14-31-28(32-21-8-11-39-12-9-21)33-26(24)19-5-6-20-15-35(27(38)22(20)13-19)16-25(37)34-29(17-36)10-7-18-3-1-2-4-23(18)29/h1-6,13-14,21,36H,7-12,15-17H2,(H,34,37)(H,31,32,33)/t29-/m1/s1" UMN InChIKey InChI 1.03 ANSUETKROJEMSJ-GDLZYMKVSA-N UMN SMILES_CANONICAL CACTVS 3.385 "OC[C@@]1(CCc2ccccc12)NC(=O)CN3Cc4ccc(cc4C3=O)c5nc(NC6CCOCC6)ncc5Cl" UMN SMILES CACTVS 3.385 "OC[C]1(CCc2ccccc12)NC(=O)CN3Cc4ccc(cc4C3=O)c5nc(NC6CCOCC6)ncc5Cl" UMN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)CC[C@]2(CO)NC(=O)CN3Cc4ccc(cc4C3=O)c5c(cnc(n5)NC6CCOCC6)Cl" UMN SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)CCC2(CO)NC(=O)CN3Cc4ccc(cc4C3=O)c5c(cnc(n5)NC6CCOCC6)Cl" # _pdbx_chem_comp_identifier.comp_id UMN _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[5-[5-chloranyl-2-(oxan-4-ylamino)pyrimidin-4-yl]-3-oxidanylidene-1~{H}-isoindol-2-yl]-~{N}-[(1~{S})-1-(hydroxymethyl)-2,3-dihydroinden-1-yl]ethanamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UMN "Create component" 2021-03-02 PDBE UMN "Initial release" 2021-10-06 RCSB ##