data_UMU # _chem_comp.id UMU _chem_comp.name "1-[[(2~{R},3~{S},4~{R},5~{R})-5-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy]prop-1-ynyl]-6-azanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-3-ethyl-urea" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H32 N12 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-06 _chem_comp.pdbx_modified_date 2025-03-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 640.608 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UMU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QGN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UMU C1 C4 C 0 1 Y N N N N N 20.942 10.944 13.164 -5.083 2.917 -0.194 C1 UMU 1 UMU C2 C5 C 0 1 Y N N N N N 20.763 12.040 12.466 -4.891 3.599 1.020 C2 UMU 2 UMU C3 C6 C 0 1 Y N N N N N 21.820 12.777 12.118 -5.665 4.749 1.265 C3 UMU 3 UMU C4 C8 C 0 1 Y N N N N N 18.917 11.165 12.861 -3.531 1.902 1.012 C4 UMU 4 UMU N1 N1 N 0 1 Y N N N N N 22.987 12.402 12.421 -6.538 5.132 0.339 N1 UMU 5 UMU N2 N3 N 0 1 Y N N N N N 22.134 10.602 13.453 -5.977 3.380 -1.061 N2 UMU 6 UMU C5 C1* C 0 1 N N R N N N 17.218 8.290 9.092 4.503 -0.487 -0.069 C5 UMU 7 UMU C6 C2 C 0 1 Y N N N N N 23.115 11.332 13.094 -6.683 4.457 -0.787 C6 UMU 8 UMU C7 C2* C 0 1 N N R N N N 16.923 9.296 8.044 4.964 -1.892 0.379 C7 UMU 9 UMU C8 C3* C 0 1 N N S N N N 15.650 9.920 8.524 3.652 -2.612 0.766 C8 UMU 10 UMU C9 C4* C 0 1 N N R N N N 15.756 9.551 9.958 2.555 -1.557 0.507 C9 UMU 11 UMU C10 C5* C 0 1 N N N N N N 14.539 9.412 10.738 1.463 -1.651 1.574 C10 UMU 12 UMU C11 CAA C 0 1 N N N N N N 14.885 3.978 10.368 -5.010 -7.481 1.459 C11 UMU 13 UMU C12 CAB C 0 1 N N N N N N 16.307 3.989 10.800 -3.763 -6.695 1.050 C12 UMU 14 UMU C13 CAD C 0 1 N N N N N N 16.655 5.649 12.492 -3.226 -4.575 -0.023 C13 UMU 15 UMU C14 CAG C 0 1 N N N N N N 17.076 7.394 14.031 -2.575 -2.480 -1.084 C14 UMU 16 UMU C15 CAH C 0 1 N N R N N N 18.497 7.371 14.217 -3.256 -1.253 -1.694 C15 UMU 17 UMU C16 CAJ C 0 1 N N R N N N 19.666 9.207 14.131 -4.049 0.852 -1.234 C16 UMU 18 UMU C17 CAK C 0 1 N N R N N N 18.751 9.322 15.309 -2.738 1.106 -2.012 C17 UMU 19 UMU C18 CAM C 0 1 N N S N N N 18.589 7.890 15.582 -2.205 -0.311 -2.321 C18 UMU 20 UMU C19 CAY C 0 1 N N N N N N 17.540 10.997 12.857 -2.528 0.968 1.426 C19 UMU 21 UMU C20 CAZ C 0 1 N N N N N N 16.393 10.783 12.896 -1.705 0.203 1.766 C20 UMU 22 UMU C21 CBA C 0 1 N N N N N N 15.007 10.386 13.000 -0.674 -0.757 2.192 C21 UMU 23 UMU C22 CBL C 0 1 Y N N N N N 16.366 6.512 7.775 5.434 1.235 1.523 C22 UMU 24 UMU C23 CBN C 0 1 Y N N N N N 17.922 5.159 7.739 7.187 1.928 0.450 C23 UMU 25 UMU C24 CBO C 0 1 Y N N N N N 18.292 6.235 8.449 6.574 0.942 -0.342 C24 UMU 26 UMU C25 CBQ C 0 1 Y N N N N N 20.260 5.286 8.809 8.219 1.215 -1.923 C25 UMU 27 UMU C26 CBS C 0 1 Y N N N N N 18.806 4.155 7.574 8.359 2.533 -0.034 C26 UMU 28 UMU N3 N6 N 0 1 N N N N N N 21.693 13.846 11.447 -5.522 5.462 2.441 N3 UMU 29 UMU N4 N7 N 0 1 Y N N N N N 19.506 12.156 12.323 -3.937 2.937 1.710 N4 UMU 30 UMU N5 N9 N 0 1 Y N N N N N 19.810 10.405 13.386 -4.216 1.852 -0.177 N5 UMU 31 UMU N6 NAC N 0 1 N N N N N N 16.568 5.327 11.266 -4.164 -5.435 0.421 N6 UMU 32 UMU N7 NAF N 0 1 N N N N N N 16.904 6.886 12.728 -3.595 -3.415 -0.602 N7 UMU 33 UMU N8 NBK N 0 1 Y N N N N N 17.302 7.054 8.455 5.469 0.528 0.358 N8 UMU 34 UMU N9 NBM N 0 1 Y N N N N N 16.730 5.367 7.333 6.443 2.055 1.575 N9 UMU 35 UMU N10 NBP N 0 1 Y N N N N N 19.472 6.274 8.988 7.119 0.621 -1.510 N10 UMU 36 UMU N11 NBR N 0 1 Y N N N N N 19.946 4.251 8.142 8.831 2.146 -1.214 N11 UMU 37 UMU N12 NBT N 0 1 N N N N N N 18.537 3.109 6.889 9.007 3.510 0.702 N12 UMU 38 UMU O1 O2* O 0 1 N N N N N N 17.957 10.235 8.020 5.610 -2.574 -0.699 O1 UMU 39 UMU O2 O3* O 0 1 N N N N N N 15.747 11.282 8.338 3.448 -3.760 -0.060 O2 UMU 40 UMU O3 O4* O 0 1 N N N N N N 16.078 8.275 9.807 3.236 -0.286 0.594 O3 UMU 41 UMU O4 O5* O 0 1 N N N N N N 14.386 10.433 11.707 0.403 -0.748 1.253 O4 UMU 42 UMU O5 OAE O 0 1 N N N N N N 16.534 4.836 13.354 -2.047 -4.844 0.100 O5 UMU 43 UMU O6 OAI O 0 1 N N N N N N 18.922 8.369 13.398 -3.889 -0.465 -0.663 O6 UMU 44 UMU O7 OAL O 0 1 N N N N N N 19.281 9.912 16.437 -3.004 1.816 -3.223 O7 UMU 45 UMU O8 OAN O 0 1 N N N N N N 19.738 7.372 16.106 -2.125 -0.518 -3.733 O8 UMU 46 UMU H1 H1 H 0 1 N N N N N N 18.116 8.548 9.672 4.374 -0.457 -1.151 H1 UMU 47 UMU H2 H2 H 0 1 N N N N N N 24.111 11.024 13.378 -7.404 4.804 -1.511 H2 UMU 48 UMU H3 H3 H 0 1 N N N N N N 16.775 8.813 7.067 5.628 -1.820 1.239 H3 UMU 49 UMU H4 H4 H 0 1 N N N N N N 14.768 9.468 8.046 3.669 -2.896 1.818 H4 UMU 50 UMU H5 H5 H 0 1 N N N N N N 16.516 10.154 10.477 2.125 -1.691 -0.486 H5 UMU 51 UMU H6 H6 H 0 1 N N N N N N 13.678 9.445 10.054 1.075 -2.669 1.610 H6 UMU 52 UMU H7 H7 H 0 1 N N N N N N 14.561 8.440 11.253 1.881 -1.387 2.546 H7 UMU 53 UMU H8 H8 H 0 1 N N N N N N 14.621 2.976 9.998 -4.712 -8.418 1.928 H8 UMU 54 UMU H9 H9 H 0 1 N N N N N N 14.241 4.235 11.222 -5.595 -6.891 2.166 H9 UMU 55 UMU H10 H10 H 0 1 N N N N N N 14.740 4.715 9.564 -5.613 -7.692 0.576 H10 UMU 56 UMU H11 H11 H 0 1 N N N N N N 16.466 3.263 11.611 -3.160 -6.484 1.934 H11 UMU 57 UMU H12 H12 H 0 1 N N N N N N 16.966 3.743 9.954 -3.178 -7.284 0.344 H12 UMU 58 UMU H13 H13 H 0 1 N N N N N N 16.687 8.420 14.107 -1.962 -2.969 -1.841 H13 UMU 59 UMU H14 H14 H 0 1 N N N N N N 16.573 6.755 14.771 -1.945 -2.169 -0.251 H14 UMU 60 UMU H15 H15 H 0 1 N N N N N N 18.967 6.387 14.073 -3.987 -1.558 -2.443 H15 UMU 61 UMU H16 H16 H 0 1 N N N N N N 20.637 8.785 14.428 -4.902 0.871 -1.912 H16 UMU 62 UMU H17 H17 H 0 1 N N N N N N 17.794 9.776 15.011 -2.027 1.655 -1.394 H17 UMU 63 UMU H18 H18 H 0 1 N N N N N N 17.687 7.676 16.174 -1.230 -0.462 -1.856 H18 UMU 64 UMU H19 H19 H 0 1 N N N N N N 14.482 11.071 13.682 -0.300 -0.476 3.176 H19 UMU 65 UMU H20 H20 H 0 1 N N N N N N 14.950 9.361 13.395 -1.106 -1.757 2.240 H20 UMU 66 UMU H21 H21 H 0 1 N N N N N N 15.399 6.959 7.597 4.679 1.132 2.288 H21 UMU 67 UMU H22 H22 H 0 1 N N N N N N 21.246 5.332 9.248 8.637 0.930 -2.878 H22 UMU 68 UMU H23 H23 H 0 1 N N N N N N 22.596 14.233 11.261 -6.062 6.252 2.599 H23 UMU 69 UMU H24 H24 H 0 1 N N N N N N 21.233 13.644 10.582 -4.881 5.172 3.109 H24 UMU 70 UMU H25 H25 H 0 1 N N N N N N 16.688 6.047 10.582 -5.104 -5.219 0.322 H25 UMU 71 UMU H26 H26 H 0 1 N N N N N N 16.979 7.516 11.955 -4.536 -3.200 -0.700 H26 UMU 72 UMU H27 H27 H 0 1 N N N N N N 19.320 2.487 6.908 8.653 3.784 1.562 H27 UMU 73 UMU H28 H28 H 0 1 N N N N N N 17.738 2.652 7.279 9.816 3.920 0.358 H28 UMU 74 UMU H29 H29 H 0 1 N N N N N N 18.755 9.820 7.713 5.866 -3.483 -0.491 H29 UMU 75 UMU H30 H30 H 0 1 N N N N N N 14.948 11.701 8.636 4.142 -4.429 0.018 H30 UMU 76 UMU H31 H31 H 0 1 N N N N N N 18.623 9.936 17.122 -2.215 2.003 -3.751 H31 UMU 77 UMU H32 H32 H 0 1 N N N N N N 19.847 7.680 16.998 -1.479 0.048 -4.178 H32 UMU 78 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UMU N12 C26 SING N N 1 UMU N9 C23 SING Y N 2 UMU N9 C22 DOUB Y N 3 UMU C26 C23 DOUB Y N 4 UMU C26 N11 SING Y N 5 UMU C23 C24 SING Y N 6 UMU C22 N8 SING Y N 7 UMU O1 C7 SING N N 8 UMU C7 C8 SING N N 9 UMU C7 C5 SING N N 10 UMU N11 C25 DOUB Y N 11 UMU O2 C8 SING N N 12 UMU C24 N8 SING Y N 13 UMU C24 N10 DOUB Y N 14 UMU N8 C5 SING N N 15 UMU C8 C9 SING N N 16 UMU C25 N10 SING Y N 17 UMU C5 O3 SING N N 18 UMU O3 C9 SING N N 19 UMU C9 C10 SING N N 20 UMU C11 C12 SING N N 21 UMU C10 O4 SING N N 22 UMU C12 N6 SING N N 23 UMU N6 C13 SING N N 24 UMU N3 C3 SING N N 25 UMU O4 C21 SING N N 26 UMU C3 N1 DOUB Y N 27 UMU C3 C2 SING Y N 28 UMU N4 C2 SING Y N 29 UMU N4 C4 DOUB Y N 30 UMU N1 C6 SING Y N 31 UMU C2 C1 DOUB Y N 32 UMU C13 N7 SING N N 33 UMU C13 O5 DOUB N N 34 UMU N7 C14 SING N N 35 UMU C19 C4 SING N N 36 UMU C19 C20 TRIP N N 37 UMU C4 N5 SING Y N 38 UMU C20 C21 SING N N 39 UMU C6 N2 DOUB Y N 40 UMU C1 N5 SING Y N 41 UMU C1 N2 SING Y N 42 UMU N5 C16 SING N N 43 UMU O6 C16 SING N N 44 UMU O6 C15 SING N N 45 UMU C14 C15 SING N N 46 UMU C16 C17 SING N N 47 UMU C15 C18 SING N N 48 UMU C17 C18 SING N N 49 UMU C17 O7 SING N N 50 UMU C18 O8 SING N N 51 UMU C5 H1 SING N N 52 UMU C6 H2 SING N N 53 UMU C7 H3 SING N N 54 UMU C8 H4 SING N N 55 UMU C9 H5 SING N N 56 UMU C10 H6 SING N N 57 UMU C10 H7 SING N N 58 UMU C11 H8 SING N N 59 UMU C11 H9 SING N N 60 UMU C11 H10 SING N N 61 UMU C12 H11 SING N N 62 UMU C12 H12 SING N N 63 UMU C14 H13 SING N N 64 UMU C14 H14 SING N N 65 UMU C15 H15 SING N N 66 UMU C16 H16 SING N N 67 UMU C17 H17 SING N N 68 UMU C18 H18 SING N N 69 UMU C21 H19 SING N N 70 UMU C21 H20 SING N N 71 UMU C22 H21 SING N N 72 UMU C25 H22 SING N N 73 UMU N3 H23 SING N N 74 UMU N3 H24 SING N N 75 UMU N6 H25 SING N N 76 UMU N7 H26 SING N N 77 UMU N12 H27 SING N N 78 UMU N12 H28 SING N N 79 UMU O1 H29 SING N N 80 UMU O2 H30 SING N N 81 UMU O7 H31 SING N N 82 UMU O8 H32 SING N N 83 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UMU InChI InChI 1.06 "InChI=1S/C26H32N12O8/c1-2-29-26(43)30-6-11-16(39)19(42)25(45-11)38-13(36-15-21(28)32-9-34-23(15)38)4-3-5-44-7-12-17(40)18(41)24(46-12)37-10-35-14-20(27)31-8-33-22(14)37/h8-12,16-19,24-25,39-42H,2,5-7H2,1H3,(H2,27,31,33)(H2,28,32,34)(H2,29,30,43)/t11-,12-,16-,17-,18-,19-,24-,25-/m1/s1" UMU InChIKey InChI 1.06 PCAFKVNUJVVERU-AKONZDDMSA-N UMU SMILES_CANONICAL CACTVS 3.385 "CCNC(=O)NC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2c(nc3c(N)ncnc23)C#CCOC[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56" UMU SMILES CACTVS 3.385 "CCNC(=O)NC[CH]1O[CH]([CH](O)[CH]1O)n2c(nc3c(N)ncnc23)C#CCOC[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56" UMU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCNC(=O)NC[C@@H]1[C@H]([C@H]([C@@H](O1)n2c(nc3c2ncnc3N)C#CCOC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O)O)O" UMU SMILES "OpenEye OEToolkits" 2.0.7 "CCNC(=O)NCC1C(C(C(O1)n2c(nc3c2ncnc3N)C#CCOCC4C(C(C(O4)n5cnc6c5ncnc6N)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id UMU _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[[(2~{R},3~{S},4~{R},5~{R})-5-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy]prop-1-ynyl]-6-azanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-3-ethyl-urea" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UMU "Create component" 2023-09-06 PDBE UMU "Initial release" 2025-03-19 RCSB #