data_UOL # _chem_comp.id UOL _chem_comp.name "1-[[(2~{R},3~{S},4~{R},5~{R})-5-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-methyl-amino]prop-1-ynyl]-6-azanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-3-ethyl-urea" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H35 N13 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-06 _chem_comp.pdbx_modified_date 2025-03-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 653.650 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UOL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QGO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UOL N4 N1 N 0 1 Y N N N N N 17.073 6.985 8.334 -5.299 -0.806 -0.036 N4 UOL 1 UOL C4 C1 C 0 1 N N R N N N 18.222 7.386 14.309 3.154 -1.820 0.411 C4 UOL 2 UOL N3 N2 N 0 1 N N N N N N 14.343 9.349 11.999 -1.669 2.064 2.313 N3 UOL 3 UOL C2 C2 C 0 1 N N N N N N 16.208 5.555 12.395 6.579 -3.204 0.822 C2 UOL 4 UOL O2 O1 O 0 1 N N N N N N 19.733 7.316 16.244 0.830 -2.426 -0.025 O2 UOL 5 UOL C5 C3 C 0 1 N N R N N N 19.487 9.317 14.160 2.441 0.344 -0.004 C5 UOL 6 UOL N5 N3 N 0 1 Y N N N N N 16.390 5.196 7.157 -4.918 -2.955 0.002 N5 UOL 7 UOL C6 C4 C 0 1 N N R N N N 18.726 9.393 15.475 1.831 -0.499 -1.153 C6 UOL 8 UOL O6 O2 O 0 1 N N N N N N 17.936 10.300 7.978 -7.435 1.359 0.864 O6 UOL 9 UOL N1 N4 N 0 1 N N N N N N 16.418 6.852 12.681 5.398 -2.583 1.013 N1 UOL 10 UOL N N5 N 0 1 N N N N N N 15.871 5.293 11.110 7.524 -3.166 1.781 N UOL 11 UOL C C5 C 0 1 N N N N N N 16.927 3.117 10.642 9.693 -3.645 2.805 C UOL 12 UOL O O3 O 0 1 N N N N N N 16.287 4.680 13.253 6.791 -3.800 -0.217 O UOL 13 UOL C1 C6 C 0 1 N N N N N N 15.650 3.930 10.629 8.807 -3.842 1.573 C1 UOL 14 UOL C10 C7 C 0 1 N N N N N N 16.089 10.803 12.924 0.041 3.180 1.049 C10 UOL 15 UOL C11 C8 C 0 1 N N N N N N 14.660 10.458 12.902 -1.205 3.364 1.811 C11 UOL 16 UOL C12 C9 C 0 1 N N N N N N 14.224 9.769 10.606 -3.070 2.139 2.751 C12 UOL 17 UOL C13 C10 C 0 1 N N R N N N 15.583 9.727 9.948 -3.987 2.156 1.526 C13 UOL 18 UOL C14 C11 C 0 1 N N R N N N 17.063 8.310 8.928 -5.173 0.623 0.259 C14 UOL 19 UOL C15 C12 C 0 1 N N R N N N 16.806 9.445 7.925 -6.147 1.035 1.392 C15 UOL 20 UOL C16 C13 C 0 1 N N S N N N 15.549 10.130 8.481 -5.455 2.292 1.973 C16 UOL 21 UOL C17 C14 C 0 1 Y N N N N N 16.074 6.383 7.617 -4.530 -1.808 0.478 C17 UOL 22 UOL C18 C15 C 0 1 Y N N N N N 17.692 5.011 7.595 -5.959 -2.764 -0.844 C18 UOL 23 UOL C19 C16 C 0 1 Y N N N N N 18.122 6.102 8.331 -6.218 -1.383 -0.877 C19 UOL 24 UOL C20 C17 C 0 1 Y N N N N N 20.112 5.225 8.647 -7.932 -1.758 -2.361 C20 UOL 25 UOL C21 C18 C 0 1 Y N N N N N 18.620 3.965 7.410 -6.763 -3.608 -1.629 C21 UOL 26 UOL C22 C19 C 0 1 N N N N N N 13.246 8.563 12.515 -0.804 1.579 3.397 C22 UOL 27 UOL C23 C20 C 0 1 Y N N N N N 20.452 12.294 12.376 4.012 3.287 -1.492 C23 UOL 28 UOL C24 C21 C 0 1 Y N N N N N 20.796 11.157 13.085 4.001 1.901 -1.253 C24 UOL 29 UOL C25 C22 C 0 1 Y N N N N N 22.943 11.529 12.819 5.950 1.696 -2.454 C25 UOL 30 UOL C26 C23 C 0 1 Y N N N N N 21.506 13.057 11.846 5.070 3.820 -2.252 C26 UOL 31 UOL C3 C24 C 0 1 N N N N N N 16.736 7.284 14.028 4.331 -2.715 0.018 C3 UOL 32 UOL C7 C25 C 0 1 N N S N N N 18.548 7.896 15.714 2.029 -1.944 -0.635 C7 UOL 33 UOL C8 C26 C 0 1 Y N N N N N 18.622 11.347 12.892 2.246 2.852 -0.300 C8 UOL 34 UOL C9 C27 C 0 1 N N N N N N 17.271 10.976 12.964 1.034 3.032 0.441 C9 UOL 35 UOL N10 N6 N 0 1 Y N N N N N 22.031 10.719 13.351 4.980 1.152 -1.748 N10 UOL 36 UOL N11 N7 N 0 1 Y N N N N N 22.762 12.638 12.097 6.004 2.991 -2.705 N11 UOL 37 UOL N12 N8 N 0 1 N N N N N N 21.329 14.142 11.075 5.135 5.176 -2.521 N12 UOL 38 UOL N2 N9 N 0 1 Y N N N N N 19.611 10.548 13.406 2.880 1.651 -0.501 N2 UOL 39 UOL N6 N10 N 0 1 Y N N N N N 19.321 6.267 8.895 -7.205 -0.929 -1.642 N6 UOL 40 UOL N7 N11 N 0 1 Y N N N N N 19.847 4.117 7.953 -7.727 -3.062 -2.363 N7 UOL 41 UOL N8 N12 N 0 1 N N N N N N 18.349 2.826 6.761 -6.556 -4.977 -1.637 N8 UOL 42 UOL N9 N13 N 0 1 Y N N N N N 19.074 12.423 12.277 2.925 3.811 -0.885 N9 UOL 43 UOL O1 O4 O 0 1 N N N N N N 18.800 8.349 13.393 3.571 -0.444 0.428 O1 UOL 44 UOL O3 O5 O 0 1 N N N N N N 19.479 10.074 16.472 0.443 -0.203 -1.320 O3 UOL 45 UOL O4 O6 O 0 1 N N N N N N 16.044 8.364 9.910 -3.871 0.914 0.812 O4 UOL 46 UOL O5 O7 O 0 1 N N N N N N 15.582 11.548 8.375 -6.036 3.479 1.429 O5 UOL 47 UOL H H1 H 0 1 N N N N N N 18.687 6.399 14.167 2.782 -2.107 1.395 H UOL 48 UOL H17 H3 H 0 1 N N N N N N 19.596 6.386 16.383 0.073 -2.469 -0.625 H17 UOL 49 UOL H1 H4 H 0 1 N N N N N N 20.497 8.943 14.383 1.724 0.464 0.807 H1 UOL 50 UOL H2 H5 H 0 1 N N N N N N 17.746 9.867 15.316 2.376 -0.341 -2.084 H2 UOL 51 UOL H24 H6 H 0 1 N N N N N N 17.818 11.020 7.369 -8.079 1.623 1.535 H24 UOL 52 UOL H14 H7 H 0 1 N N N N N N 16.354 7.532 11.950 5.256 -2.048 1.809 H14 UOL 53 UOL H13 H8 H 0 1 N N N N N N 15.770 6.055 10.470 7.355 -2.691 2.610 H13 UOL 54 UOL H9 H9 H 0 1 N N N N N N 16.719 2.101 10.274 9.864 -2.581 2.963 H9 UOL 55 UOL H8 H10 H 0 1 N N N N N N 17.674 3.597 9.992 9.198 -4.067 3.680 H8 UOL 56 UOL H10 H11 H 0 1 N N N N N N 17.316 3.063 11.669 10.647 -4.148 2.650 H10 UOL 57 UOL H12 H12 H 0 1 N N N N N N 15.266 3.973 9.599 8.636 -4.907 1.415 H12 UOL 58 UOL H11 H13 H 0 1 N N N N N N 14.909 3.439 11.277 9.302 -3.420 0.699 H11 UOL 59 UOL H20 H14 H 0 1 N N N N N N 14.353 10.177 13.920 -1.967 3.796 1.162 H20 UOL 60 UOL H19 H15 H 0 1 N N N N N N 14.092 11.343 12.579 -1.021 4.034 2.651 H19 UOL 61 UOL H21 H16 H 0 1 N N N N N N 13.539 9.091 10.076 -3.304 1.271 3.368 H21 UOL 62 UOL H22 H17 H 0 1 N N N N N N 13.829 10.795 10.565 -3.221 3.049 3.331 H22 UOL 63 UOL H4 H18 H 0 1 N N N N N N 16.288 10.369 10.497 -3.717 2.986 0.873 H4 UOL 64 UOL H5 H19 H 0 1 N N N N N N 18.038 8.495 9.403 -5.353 1.216 -0.637 H5 UOL 65 UOL H6 H20 H 0 1 N N N N N N 16.622 9.045 6.917 -6.223 0.249 2.144 H6 UOL 66 UOL H7 H21 H 0 1 N N N N N N 14.653 9.712 7.998 -5.524 2.297 3.061 H7 UOL 67 UOL H25 H22 H 0 1 N N N N N N 15.112 6.844 7.446 -3.719 -1.669 1.177 H25 UOL 68 UOL H26 H23 H 0 1 N N N N N N 21.106 5.285 9.066 -8.726 -1.355 -2.973 H26 UOL 69 UOL H29 H24 H 0 1 N N N N N N 13.027 7.738 11.821 -0.745 2.335 4.180 H29 UOL 70 UOL H30 H25 H 0 1 N N N N N N 13.520 8.152 13.498 -1.220 0.660 3.810 H30 UOL 71 UOL H31 H26 H 0 1 N N N N N N 12.356 9.200 12.619 0.194 1.383 3.005 H31 UOL 72 UOL H32 H27 H 0 1 N N N N N N 23.972 11.251 12.995 6.731 1.059 -2.841 H32 UOL 73 UOL H16 H28 H 0 1 N N N N N N 16.285 8.274 14.189 4.000 -3.753 -0.023 H16 UOL 74 UOL H15 H29 H 0 1 N N N N N N 16.299 6.563 14.735 4.706 -2.414 -0.960 H15 UOL 75 UOL H3 H30 H 0 1 N N N N N N 17.689 7.725 16.379 2.335 -2.604 -1.447 H3 UOL 76 UOL H34 H31 H 0 1 N N N N N N 22.219 14.495 10.787 4.447 5.771 -2.184 H34 UOL 77 UOL H33 H32 H 0 1 N N N N N N 20.792 13.894 10.269 5.869 5.531 -3.046 H33 UOL 78 UOL H27 H33 H 0 1 N N N N N N 19.152 2.230 6.783 -5.849 -5.363 -1.097 H27 UOL 79 UOL H28 H34 H 0 1 N N N N N N 17.580 2.365 7.203 -7.117 -5.549 -2.183 H28 UOL 80 UOL H18 H35 H 0 1 N N N N N N 18.980 10.106 17.280 0.016 -0.706 -2.027 H18 UOL 81 UOL H23 H36 H 0 1 N N N N N N 14.781 11.912 8.734 -6.976 3.585 1.630 H23 UOL 82 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UOL C C1 SING N N 1 UOL C1 N SING N N 2 UOL N C2 SING N N 3 UOL C2 O DOUB N N 4 UOL N1 C2 SING N N 5 UOL C3 N1 SING N N 6 UOL C4 C3 SING N N 7 UOL C4 O1 SING N N 8 UOL O1 C5 SING N N 9 UOL C5 C6 SING N N 10 UOL C6 C7 SING N N 11 UOL C7 C4 SING N N 12 UOL O2 C7 SING N N 13 UOL O3 C6 SING N N 14 UOL N2 C5 SING N N 15 UOL N2 C8 SING Y N 16 UOL C9 C8 SING N N 17 UOL C10 C9 TRIP N N 18 UOL C11 C10 SING N N 19 UOL N3 C11 SING N N 20 UOL C12 N3 SING N N 21 UOL C13 C12 SING N N 22 UOL C13 O4 SING N N 23 UOL O4 C14 SING N N 24 UOL C14 C15 SING N N 25 UOL C15 C16 SING N N 26 UOL C16 C13 SING N N 27 UOL O5 C16 SING N N 28 UOL O6 C15 SING N N 29 UOL N4 C14 SING N N 30 UOL N4 C17 SING Y N 31 UOL C17 N5 DOUB Y N 32 UOL N5 C18 SING Y N 33 UOL C18 C19 DOUB Y N 34 UOL C19 N4 SING Y N 35 UOL N6 C19 SING Y N 36 UOL C20 N6 DOUB Y N 37 UOL N7 C20 SING Y N 38 UOL C21 N7 DOUB Y N 39 UOL C18 C21 SING Y N 40 UOL N8 C21 SING N N 41 UOL C22 N3 SING N N 42 UOL C8 N9 DOUB Y N 43 UOL N9 C23 SING Y N 44 UOL C23 C24 DOUB Y N 45 UOL C24 N2 SING Y N 46 UOL N10 C24 SING Y N 47 UOL C25 N10 DOUB Y N 48 UOL N11 C25 SING Y N 49 UOL C26 N11 DOUB Y N 50 UOL C23 C26 SING Y N 51 UOL N12 C26 SING N N 52 UOL C4 H SING N N 53 UOL O2 H17 SING N N 54 UOL C5 H1 SING N N 55 UOL C6 H2 SING N N 56 UOL O6 H24 SING N N 57 UOL N1 H14 SING N N 58 UOL N H13 SING N N 59 UOL C H9 SING N N 60 UOL C H8 SING N N 61 UOL C H10 SING N N 62 UOL C1 H12 SING N N 63 UOL C1 H11 SING N N 64 UOL C11 H20 SING N N 65 UOL C11 H19 SING N N 66 UOL C12 H21 SING N N 67 UOL C12 H22 SING N N 68 UOL C13 H4 SING N N 69 UOL C14 H5 SING N N 70 UOL C15 H6 SING N N 71 UOL C16 H7 SING N N 72 UOL C17 H25 SING N N 73 UOL C20 H26 SING N N 74 UOL C22 H29 SING N N 75 UOL C22 H30 SING N N 76 UOL C22 H31 SING N N 77 UOL C25 H32 SING N N 78 UOL C3 H16 SING N N 79 UOL C3 H15 SING N N 80 UOL C7 H3 SING N N 81 UOL N12 H34 SING N N 82 UOL N12 H33 SING N N 83 UOL N8 H27 SING N N 84 UOL N8 H28 SING N N 85 UOL O3 H18 SING N N 86 UOL O5 H23 SING N N 87 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UOL InChI InChI 1.06 "InChI=1S/C27H35N13O7/c1-3-30-27(45)31-7-12-17(41)20(44)26(46-12)40-14(37-16-22(29)33-10-35-24(16)40)5-4-6-38(2)8-13-18(42)19(43)25(47-13)39-11-36-15-21(28)32-9-34-23(15)39/h9-13,17-20,25-26,41-44H,3,6-8H2,1-2H3,(H2,28,32,34)(H2,29,33,35)(H2,30,31,45)/t12-,13-,17-,18-,19-,20-,25-,26-/m1/s1" UOL InChIKey InChI 1.06 SKRVTLNQCVUAMA-DQSURDJZSA-N UOL SMILES_CANONICAL CACTVS 3.385 "CCNC(=O)NC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2c(nc3c(N)ncnc23)C#CCN(C)C[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56" UOL SMILES CACTVS 3.385 "CCNC(=O)NC[CH]1O[CH]([CH](O)[CH]1O)n2c(nc3c(N)ncnc23)C#CCN(C)C[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56" UOL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCNC(=O)NC[C@@H]1[C@H]([C@H]([C@@H](O1)n2c(nc3c2ncnc3N)C#CCN(C)C[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O)O)O" UOL SMILES "OpenEye OEToolkits" 2.0.7 "CCNC(=O)NCC1C(C(C(O1)n2c(nc3c2ncnc3N)C#CCN(C)CC4C(C(C(O4)n5cnc6c5ncnc6N)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id UOL _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[[(2~{R},3~{S},4~{R},5~{R})-5-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-methyl-amino]prop-1-ynyl]-6-azanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-3-ethyl-urea" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UOL "Create component" 2023-09-06 PDBE UOL "Initial release" 2025-03-19 RCSB #