data_UOO # _chem_comp.id UOO _chem_comp.name "(3R,4R,5R)-5-(6-amino-8-bromo-9H-purin-9-yl)-3,4,5-trihydroxypentyl [(2S,3S,4S,5R)-3,4,5-trihydroxyoxolan-2-yl]methyl dihydrogen diphosphate (non-preferred name)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H24 Br N5 O14 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-08-23 _chem_comp.pdbx_modified_date 2024-08-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 640.228 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UOO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8E6T _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UOO C02 C1 C 0 1 Y N N N N N 155.349 95.305 175.494 8.190 2.832 1.093 C02 UOO 1 UOO C04 C2 C 0 1 Y N N N N N 156.539 95.852 177.404 7.233 2.178 3.088 C04 UOO 2 UOO C06 C3 C 0 1 Y N N N N N 154.517 94.598 177.651 6.585 1.037 1.201 C06 UOO 3 UOO C07 C4 C 0 1 Y N N N N N 154.344 94.617 176.295 7.439 1.845 0.433 C07 UOO 4 UOO C09 C5 C 0 1 Y N N N N N 152.656 93.514 177.200 6.465 0.461 -0.925 C09 UOO 5 UOO C12 C6 C 0 1 N N R N N N 153.188 93.608 179.640 5.005 -0.864 0.652 C12 UOO 6 UOO C13 C7 C 0 1 N N R N N N 154.415 93.980 180.547 3.611 -0.409 0.218 C13 UOO 7 UOO C15 C8 C 0 1 N N R N N N 153.949 95.286 181.323 2.589 -1.493 0.566 C15 UOO 8 UOO C17 C9 C 0 1 N N N N N N 152.697 95.100 181.476 1.194 -1.037 0.132 C17 UOO 9 UOO C18 C10 C 0 1 N N N N N N 152.002 96.390 181.646 0.157 -2.064 0.590 C18 UOO 10 UOO C25 C11 C 0 1 N N N N N N 157.444 99.455 178.964 -7.426 -0.052 0.121 C25 UOO 11 UOO C26 C12 C 0 1 N N S N N N 158.527 98.942 177.951 -7.782 1.294 -0.514 C26 UOO 12 UOO C28 C13 C 0 1 N N R N N N 159.710 100.405 176.545 -7.896 3.569 -0.095 C28 UOO 13 UOO C30 C14 C 0 1 N N S N N N 159.115 99.610 175.697 -9.334 3.135 -0.439 C30 UOO 14 UOO C32 C15 C 0 1 N N S N N N 157.980 99.008 176.500 -9.295 1.590 -0.354 C32 UOO 15 UOO N01 N1 N 0 1 N N N N N N 155.213 95.353 174.048 9.049 3.658 0.388 N01 UOO 16 UOO N03 N2 N 0 1 Y N N N N N 156.394 95.885 176.088 8.053 2.958 2.409 N03 UOO 17 UOO N05 N3 N 0 1 Y N N N N N 155.625 95.226 178.175 6.510 1.240 2.513 N05 UOO 18 UOO N08 N4 N 0 1 Y N N N N N 153.190 93.943 176.025 7.319 1.442 -0.855 N08 UOO 19 UOO N11 N5 N 0 1 Y N N N N N 153.446 93.901 178.191 5.984 0.174 0.319 N11 UOO 20 UOO O14 O1 O 0 1 N N N N N N 154.672 93.000 181.410 3.272 0.801 0.899 O14 UOO 21 UOO O16 O2 O 0 1 N N N N N N 154.615 95.371 182.653 2.928 -2.703 -0.115 O16 UOO 22 UOO O19 O3 O 0 1 N N N N N N 152.568 97.350 180.782 -1.146 -1.639 0.186 O19 UOO 23 UOO O21 O4 O 0 1 N N N N N N 154.673 99.097 180.662 -3.770 -1.646 0.017 O21 UOO 24 UOO O23 O5 O 0 1 N N N N N N 156.172 97.573 182.141 -5.501 -1.808 1.847 O23 UOO 25 UOO O24 O6 O 0 1 N N N N N N 157.212 98.429 179.918 -6.054 -0.354 -0.141 O24 UOO 26 UOO O27 O7 O 0 1 N N N N N N 159.577 99.692 177.985 -7.150 2.377 0.203 O27 UOO 27 UOO O29 O8 O 0 1 N N N N N N 161.044 100.545 176.207 -7.311 4.243 -1.211 O29 UOO 28 UOO O31 O9 O 0 1 N N N N N N 160.064 98.516 175.240 -9.680 3.555 -1.760 O31 UOO 29 UOO O33 O10 O 0 1 N N N N N N 156.888 99.816 176.443 -9.772 1.137 0.914 O33 UOO 30 UOO O34 O11 O 0 1 N N N N N N 156.742 99.964 181.975 -6.010 -2.975 -0.333 O34 UOO 31 UOO O35 O12 O 0 1 N N N N N N 153.568 98.408 182.921 -2.574 -2.731 1.957 O35 UOO 32 UOO O36 O13 O 0 1 N N N N N N 152.300 99.867 181.386 -2.427 -3.886 -0.282 O36 UOO 33 UOO O37 O14 O 0 1 N N N N N N 152.183 94.318 180.068 5.345 -2.074 -0.029 O37 UOO 34 UOO P20 P1 P 0 1 N N N N N N 153.261 98.704 181.468 -2.481 -2.481 0.502 P20 UOO 35 UOO P22 P2 P 0 1 N N N N N N 156.211 98.762 181.223 -5.337 -1.698 0.380 P22 UOO 36 UOO BR10 BR1 BR 0 0 N N N N N N 151.016 92.495 177.392 5.966 -0.434 -2.514 BR10 UOO 37 UOO H1 H1 H 0 1 N N N N N N 157.393 96.328 177.863 7.151 2.314 4.157 H1 UOO 38 UOO H2 H2 H 0 1 N N N N N N 153.000 92.530 179.753 5.013 -1.039 1.728 H2 UOO 39 UOO H3 H3 H 0 1 N N N N N N 155.277 94.228 179.910 3.604 -0.234 -0.858 H3 UOO 40 UOO H4 H4 H 0 1 N N N N N N 154.197 96.169 180.716 2.596 -1.667 1.642 H4 UOO 41 UOO H5 H5 H 0 1 N N N N N N 152.296 94.586 180.590 0.972 -0.070 0.583 H5 UOO 42 UOO H6 H6 H 0 1 N N N N N N 152.529 94.478 182.368 1.162 -0.948 -0.954 H6 UOO 43 UOO H7 H7 H 0 1 N N N N N N 150.936 96.266 181.407 0.379 -3.032 0.140 H7 UOO 44 UOO H8 H8 H 0 1 N N N N N N 152.107 96.728 182.688 0.189 -2.153 1.676 H8 UOO 45 UOO H9 H9 H 0 1 N N N N N N 157.807 100.361 179.471 -7.588 0.000 1.197 H9 UOO 46 UOO H10 H10 H 0 1 N N N N N N 156.511 99.684 178.428 -8.057 -0.832 -0.304 H10 UOO 47 UOO H11 H11 H 0 1 N N N N N N 158.754 97.893 178.191 -7.497 1.309 -1.566 H11 UOO 48 UOO H12 H12 H 0 1 N N N N N N 159.217 101.386 176.609 -7.905 4.227 0.774 H12 UOO 49 UOO H13 H13 H 0 1 N N N N N N 158.711 100.139 174.821 -10.039 3.540 0.288 H13 UOO 50 UOO H14 H14 H 0 1 N N N N N N 157.766 97.990 176.142 -9.866 1.141 -1.166 H14 UOO 51 UOO H15 H15 H 0 1 N N N N N N 155.984 95.856 173.657 9.137 3.559 -0.573 H15 UOO 52 UOO H16 H16 H 0 1 N N N N N N 155.203 94.422 173.683 9.562 4.336 0.855 H16 UOO 53 UOO H17 H17 H 0 1 N N N N N N 155.416 93.240 181.950 3.259 0.720 1.863 H17 UOO 54 UOO H18 H18 H 0 1 N N N N N N 155.216 96.107 182.660 2.941 -2.621 -1.079 H18 UOO 55 UOO H19 H19 H 0 1 N N N N N N 161.469 101.124 176.828 -6.404 4.542 -1.059 H19 UOO 56 UOO H20 H20 H 0 1 N N N N N N 159.618 97.946 174.624 -9.663 4.514 -1.885 H20 UOO 57 UOO H21 H21 H 0 1 N N N N N N 156.563 99.848 175.551 -10.714 1.299 1.061 H21 UOO 58 UOO H22 H22 H 0 1 N N N N N N 156.940 99.716 182.870 -5.941 -2.970 -1.297 H22 UOO 59 UOO H23 H23 H 0 1 N N N N N N 152.091 100.168 182.262 -2.366 -3.799 -1.243 H23 UOO 60 UOO H24 H24 H 0 1 N N N N N N 151.413 94.125 179.546 5.358 -1.993 -0.993 H24 UOO 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UOO C02 C07 DOUB Y N 1 UOO C02 N01 SING N N 2 UOO C02 N03 SING Y N 3 UOO C04 N03 DOUB Y N 4 UOO C04 N05 SING Y N 5 UOO C06 C07 SING Y N 6 UOO C06 N05 DOUB Y N 7 UOO C06 N11 SING Y N 8 UOO C07 N08 SING Y N 9 UOO C09 N08 DOUB Y N 10 UOO C09 N11 SING Y N 11 UOO C09 BR10 SING N N 12 UOO C12 C13 SING N N 13 UOO C12 N11 SING N N 14 UOO C12 O37 SING N N 15 UOO C13 C15 SING N N 16 UOO C13 O14 SING N N 17 UOO C15 C17 SING N N 18 UOO C15 O16 SING N N 19 UOO C17 C18 SING N N 20 UOO C18 O19 SING N N 21 UOO C25 C26 SING N N 22 UOO C25 O24 SING N N 23 UOO C26 C32 SING N N 24 UOO C26 O27 SING N N 25 UOO C28 C30 SING N N 26 UOO C28 O27 SING N N 27 UOO C28 O29 SING N N 28 UOO C30 C32 SING N N 29 UOO C30 O31 SING N N 30 UOO C32 O33 SING N N 31 UOO O19 P20 SING N N 32 UOO O21 P20 SING N N 33 UOO O21 P22 SING N N 34 UOO O23 P22 DOUB N N 35 UOO O24 P22 SING N N 36 UOO O34 P22 SING N N 37 UOO O35 P20 DOUB N N 38 UOO O36 P20 SING N N 39 UOO C04 H1 SING N N 40 UOO C12 H2 SING N N 41 UOO C13 H3 SING N N 42 UOO C15 H4 SING N N 43 UOO C17 H5 SING N N 44 UOO C17 H6 SING N N 45 UOO C18 H7 SING N N 46 UOO C18 H8 SING N N 47 UOO C25 H9 SING N N 48 UOO C25 H10 SING N N 49 UOO C26 H11 SING N N 50 UOO C28 H12 SING N N 51 UOO C30 H13 SING N N 52 UOO C32 H14 SING N N 53 UOO N01 H15 SING N N 54 UOO N01 H16 SING N N 55 UOO O14 H17 SING N N 56 UOO O16 H18 SING N N 57 UOO O29 H19 SING N N 58 UOO O31 H20 SING N N 59 UOO O33 H21 SING N N 60 UOO O34 H22 SING N N 61 UOO O36 H23 SING N N 62 UOO O37 H24 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UOO SMILES ACDLabs 12.01 "OC1C(COP(=O)(O)OP(=O)(O)OCCC(O)C(O)C(O)n2c3ncnc(N)c3nc2Br)OC(O)C1O" UOO InChI InChI 1.06 "InChI=1S/C15H24BrN5O14P2/c16-15-20-7-11(17)18-4-19-12(7)21(15)13(26)8(23)5(22)1-2-32-36(28,29)35-37(30,31)33-3-6-9(24)10(25)14(27)34-6/h4-6,8-10,13-14,22-27H,1-3H2,(H,28,29)(H,30,31)(H2,17,18,19)/t5-,6+,8-,9-,10+,13-,14-/m1/s1" UOO InChIKey InChI 1.06 YLKLFNYZVXTMJI-XDPXHJCRSA-N UOO SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n([C@H](O)[C@H](O)[C@H](O)CCO[P](O)(=O)O[P](O)(=O)OC[C@@H]3O[C@@H](O)[C@@H](O)[C@@H]3O)c(Br)nc12" UOO SMILES CACTVS 3.385 "Nc1ncnc2n([CH](O)[CH](O)[CH](O)CCO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH](O)[CH](O)[CH]3O)c(Br)nc12" UOO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(c(n2)Br)[C@@H]([C@@H]([C@@H](CCOP(=O)(O)OP(=O)(O)OC[C@H]3[C@H]([C@@H]([C@@H](O3)O)O)O)O)O)O)N" UOO SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(c(n2)Br)C(C(C(CCOP(=O)(O)OP(=O)(O)OCC3C(C(C(O3)O)O)O)O)O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier UOO "SYSTEMATIC NAME" ACDLabs 12.01 "(3R,4R,5R)-5-(6-amino-8-bromo-9H-purin-9-yl)-3,4,5-trihydroxypentyl [(2S,3S,4S,5R)-3,4,5-trihydroxyoxolan-2-yl]methyl dihydrogen diphosphate (non-preferred name)" UOO "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[[(3~{R},4~{R},5~{R})-5-(6-azanyl-8-bromanyl-purin-9-yl)-3,4,5-tris(oxidanyl)pentoxy]-oxidanyl-phosphoryl] [(2~{S},3~{S},4~{S},5~{R})-3,4,5-tris(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UOO "Create component" 2022-08-23 RCSB UOO "Initial release" 2024-08-14 RCSB #