data_UP0 # _chem_comp.id UP0 _chem_comp.name "(1~{Z},3~{R},4~{S},7~{S},8~{Z})-8-ethylidene-4,7-bis(oxidanyl)-5-oxidanylidene-3-propyl-cyclononene-1,2-dicarboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H22 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-02-08 _chem_comp.pdbx_modified_date 2023-03-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 326.342 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UP0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8CI0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UP0 C1 C1 C 0 1 N N N 75.484 99.681 85.125 4.503 -0.979 -1.828 C1 UP0 1 UP0 C2 C2 C 0 1 N N N 76.250 100.508 86.205 3.019 -0.666 -1.630 C2 UP0 2 UP0 C4 C3 C 0 1 N N R 76.638 102.506 84.620 1.039 -1.021 -0.147 C4 UP0 3 UP0 O8 O1 O 0 1 N N N 74.599 103.773 84.100 0.309 -3.162 0.735 O8 UP0 4 UP0 C9 C4 C 0 1 N N N 76.489 104.206 82.771 -0.799 -1.163 1.470 C9 UP0 5 UP0 C11 C5 C 0 1 N N N 76.056 103.430 81.571 -2.102 -1.686 0.942 C11 UP0 6 UP0 C15 C6 C 0 1 N N N 78.410 102.514 80.972 -2.154 -0.107 -1.011 C15 UP0 7 UP0 C16 C7 C 0 1 N N N 79.598 102.683 80.388 -3.168 0.700 -0.825 C16 UP0 8 UP0 C17 C8 C 0 1 N N N 79.927 103.624 79.240 -4.425 0.191 -0.168 C17 UP0 9 UP0 C19 C9 C 0 1 N N N 78.890 102.099 83.460 -0.067 1.114 -0.641 C19 UP0 10 UP0 C21 C10 C 0 1 N N N 78.929 103.072 85.701 1.682 1.182 1.082 C21 UP0 11 UP0 C24 C11 C 0 1 N N N 80.377 102.127 83.538 -0.282 2.558 -0.427 C24 UP0 12 UP0 C3 C12 C 0 1 N N N 76.117 102.045 86.025 2.524 -1.334 -0.345 C3 UP0 13 UP0 C6 C13 C 0 1 N N S 76.033 103.855 84.175 0.511 -1.789 1.074 C6 UP0 14 UP0 O10 O2 O 0 1 N N N 77.189 105.160 82.601 -0.801 -0.221 2.226 O10 UP0 15 UP0 C12 C14 C 0 1 N N S 77.122 103.206 80.498 -2.229 -1.554 -0.575 C12 UP0 16 UP0 O14 O3 O 0 1 N N N 76.369 102.411 79.587 -1.171 -2.285 -1.199 O14 UP0 17 UP0 C18 C15 C 0 1 N N N 78.323 101.511 82.156 -0.890 0.387 -1.667 C18 UP0 18 UP0 C20 C16 C 0 1 N N N 78.192 102.512 84.549 0.861 0.466 0.087 C20 UP0 19 UP0 O22 O4 O 0 1 N N N 79.006 104.264 85.738 2.799 1.560 0.789 O22 UP0 20 UP0 O23 O5 O 0 1 N N N 79.498 102.310 86.607 1.193 1.417 2.315 O23 UP0 21 UP0 O25 O6 O 0 1 N N N 81.014 103.084 83.951 -1.121 3.241 -1.230 O25 UP0 22 UP0 O26 O7 O 0 1 N N N 81.018 101.003 83.144 0.299 3.132 0.473 O26 UP0 23 UP0 H1 H1 H 0 1 N N N 75.624 98.607 85.317 5.071 -0.600 -0.978 H1 UP0 24 UP0 H2 H2 H 0 1 N N N 74.412 99.924 85.169 4.640 -2.058 -1.904 H2 UP0 25 UP0 H3 H3 H 0 1 N N N 75.876 99.929 84.127 4.856 -0.503 -2.743 H3 UP0 26 UP0 H4 H4 H 0 1 N N N 75.853 100.239 87.195 2.882 0.413 -1.554 H4 UP0 27 UP0 H5 H5 H 0 1 N N N 77.316 100.243 86.153 2.451 -1.045 -2.479 H5 UP0 28 UP0 H6 H6 H 0 1 N N N 76.294 101.751 83.897 0.482 -1.321 -1.035 H6 UP0 29 UP0 H7 H7 H 0 1 N N N 74.249 103.554 84.955 -0.052 -3.696 1.455 H7 UP0 30 UP0 H8 H8 H 0 1 N N N 75.218 103.970 81.106 -2.192 -2.739 1.210 H8 UP0 31 UP0 H9 H9 H 0 1 N N N 75.711 102.443 81.914 -2.917 -1.135 1.411 H9 UP0 32 UP0 H10 H10 H 0 1 N N N 80.413 102.088 80.772 -3.104 1.731 -1.142 H10 UP0 33 UP0 H11 H11 H 0 1 N N N 80.993 103.533 78.984 -5.153 1.000 -0.099 H11 UP0 34 UP0 H12 H12 H 0 1 N N N 79.316 103.361 78.364 -4.842 -0.623 -0.762 H12 UP0 35 UP0 H13 H13 H 0 1 N N N 79.710 104.659 79.541 -4.191 -0.173 0.833 H13 UP0 36 UP0 H14 H14 H 0 1 N N N 76.704 102.549 86.807 2.661 -2.413 -0.421 H14 UP0 37 UP0 H15 H15 H 0 1 N N N 75.058 102.326 86.123 3.092 -0.955 0.504 H15 UP0 38 UP0 H16 H16 H 0 1 N N N 76.345 104.644 84.875 1.222 -1.711 1.896 H16 UP0 39 UP0 H17 H17 H 0 1 N N N 77.382 104.173 80.042 -3.185 -1.972 -0.889 H17 UP0 40 UP0 H18 H18 H 0 1 N N N 75.587 102.883 79.326 -1.152 -3.224 -0.967 H18 UP0 41 UP0 H19 H19 H 0 1 N N N 77.268 101.244 82.317 -0.325 -0.459 -2.058 H19 UP0 42 UP0 H20 H20 H 0 1 N N N 78.894 100.607 81.897 -1.141 1.066 -2.482 H20 UP0 43 UP0 H21 H21 H 0 1 N N N 79.945 102.855 87.244 1.768 1.889 2.933 H21 UP0 44 UP0 H22 H22 H 0 1 N N N 81.942 102.879 83.932 -1.229 4.185 -1.051 H22 UP0 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UP0 C17 C16 SING N N 1 UP0 O14 C12 SING N N 2 UP0 C16 C15 DOUB N Z 3 UP0 C12 C15 SING N N 4 UP0 C12 C11 SING N N 5 UP0 C15 C18 SING N N 6 UP0 C11 C9 SING N N 7 UP0 C18 C19 SING N N 8 UP0 O10 C9 DOUB N N 9 UP0 C9 C6 SING N N 10 UP0 O26 C24 DOUB N N 11 UP0 C19 C24 SING N N 12 UP0 C19 C20 DOUB N Z 13 UP0 C24 O25 SING N N 14 UP0 O8 C6 SING N N 15 UP0 C6 C4 SING N N 16 UP0 C20 C4 SING N N 17 UP0 C20 C21 SING N N 18 UP0 C4 C3 SING N N 19 UP0 C1 C2 SING N N 20 UP0 C21 O22 DOUB N N 21 UP0 C21 O23 SING N N 22 UP0 C3 C2 SING N N 23 UP0 C1 H1 SING N N 24 UP0 C1 H2 SING N N 25 UP0 C1 H3 SING N N 26 UP0 C2 H4 SING N N 27 UP0 C2 H5 SING N N 28 UP0 C4 H6 SING N N 29 UP0 O8 H7 SING N N 30 UP0 C11 H8 SING N N 31 UP0 C11 H9 SING N N 32 UP0 C16 H10 SING N N 33 UP0 C17 H11 SING N N 34 UP0 C17 H12 SING N N 35 UP0 C17 H13 SING N N 36 UP0 C3 H14 SING N N 37 UP0 C3 H15 SING N N 38 UP0 C6 H16 SING N N 39 UP0 C12 H17 SING N N 40 UP0 O14 H18 SING N N 41 UP0 C18 H19 SING N N 42 UP0 C18 H20 SING N N 43 UP0 O23 H21 SING N N 44 UP0 O25 H22 SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UP0 InChI InChI 1.06 "InChI=1S/C16H22O7/c1-3-5-9-13(16(22)23)10(15(20)21)6-8(4-2)11(17)7-12(18)14(9)19/h4,9,11,14,17,19H,3,5-7H2,1-2H3,(H,20,21)(H,22,23)/b8-4-,13-10-/t9-,11+,14+/m1/s1" UP0 InChIKey InChI 1.06 YFQGJJCDYCWLSI-KRKAZGBPSA-N UP0 SMILES_CANONICAL CACTVS 3.385 "CCC[C@H]/1[C@H](O)C(=O)C[C@H](O)\C(CC(=C/1C(O)=O)/C(O)=O)=C/C" UP0 SMILES CACTVS 3.385 "CCC[CH]1[CH](O)C(=O)C[CH](O)C(CC(=C1C(O)=O)C(O)=O)=CC" UP0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC[C@H]/1[C@@H](C(=O)C[C@@H](/C(=C\C)/C/C(=C1/C(=O)O)/C(=O)O)O)O" UP0 SMILES "OpenEye OEToolkits" 2.0.7 "CCCC1C(C(=O)CC(C(=CC)CC(=C1C(=O)O)C(=O)O)O)O" # _pdbx_chem_comp_identifier.comp_id UP0 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(1~{Z},3~{R},4~{S},7~{S},8~{Z})-8-ethylidene-4,7-bis(oxidanyl)-5-oxidanylidene-3-propyl-cyclononene-1,2-dicarboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UP0 "Create component" 2023-02-08 PDBE UP0 "Initial release" 2023-03-22 RCSB #