data_UP9 # _chem_comp.id UP9 _chem_comp.name "(2S)-6-fluoro-5-[(3S)-3-(3-methyl-2-oxoimidazolidin-1-yl)piperidin-1-yl]-2-(4-methylpiperazine-1-carbonyl)-2,3,4,9-tetrahydro-1H-carbazole-8-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H38 F N7 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-06 _chem_comp.pdbx_modified_date 2024-01-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 539.645 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UP9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8U2E _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UP9 C14 C1 C 0 1 N N N N N N 9.862 -7.590 -11.293 0.085 -5.185 -0.796 C14 UP9 1 UP9 C11 C2 C 0 1 N N R N N N 9.537 -7.050 -19.515 -4.798 0.641 1.014 C11 UP9 2 UP9 C10 C3 C 0 1 N N N N N N 8.682 -5.826 -19.885 -4.304 1.229 2.339 C10 UP9 3 UP9 C12 C4 C 0 1 N N N N N N 9.219 -7.315 -17.998 -4.079 -0.684 0.750 C12 UP9 4 UP9 C01 C5 C 0 1 Y N N N N N 10.983 -6.832 -13.488 0.079 -2.722 -0.407 C01 UP9 5 UP9 C02 C6 C 0 1 Y N N N N N 10.957 -6.486 -14.877 -0.600 -1.550 -0.037 C02 UP9 6 UP9 C03 C7 C 0 1 Y N N N N N 9.711 -6.516 -15.613 -1.955 -1.611 0.324 C03 UP9 7 UP9 C04 C8 C 0 1 Y N N N N N 8.607 -6.927 -14.809 -2.621 -2.831 0.314 C04 UP9 8 UP9 C05 C9 C 0 1 Y N N N N N 8.650 -7.265 -13.420 -1.959 -3.987 -0.049 C05 UP9 9 UP9 C06 C10 C 0 1 Y N N N N N 9.855 -7.224 -12.716 -0.611 -3.948 -0.411 C06 UP9 10 UP9 C08 C11 C 0 1 N N N N N N 8.805 -4.996 -17.451 -2.125 0.067 1.969 C08 UP9 11 UP9 C09 C12 C 0 1 N N N N N N 8.985 -4.653 -18.954 -2.785 1.415 2.270 C09 UP9 12 UP9 C18 C13 C 0 1 Y N N N N N 13.119 -6.311 -14.078 1.539 -1.022 -0.540 C18 UP9 13 UP9 C19 C14 C 0 1 Y N N N N N 12.317 -6.172 -15.198 0.378 -0.472 -0.137 C19 UP9 14 UP9 C20 C15 C 0 1 N N N N N N 14.583 -6.070 -14.002 2.808 -0.231 -0.764 C20 UP9 15 UP9 C21 C16 C 0 1 N N S N N N 15.181 -5.311 -15.220 2.663 1.128 -0.071 C21 UP9 16 UP9 C22 C17 C 0 1 N N N N N N 14.460 -5.785 -16.500 1.337 1.774 -0.484 C22 UP9 17 UP9 C23 C18 C 0 1 N N N N N N 12.932 -5.748 -16.462 0.176 0.994 0.145 C23 UP9 18 UP9 C24 C19 C 0 1 N N N N N N 16.743 -5.528 -15.389 3.805 2.023 -0.477 C24 UP9 19 UP9 C27 C20 C 0 1 N N N N N N 17.452 -3.303 -14.194 6.146 2.729 -0.278 C27 UP9 20 UP9 C28 C21 C 0 1 N N N N N N 18.613 -2.605 -13.333 7.343 1.784 -0.424 C28 UP9 21 UP9 C30 C22 C 0 1 N N N N N N 20.092 -4.535 -13.929 6.382 0.197 1.137 C30 UP9 22 UP9 C31 C23 C 0 1 N N N N N N 19.208 -4.869 -15.143 5.145 1.076 1.347 C31 UP9 23 UP9 C32 C24 C 0 1 N N N N N N 20.733 -2.301 -14.832 8.778 0.261 0.794 C32 UP9 24 UP9 C34 C25 C 0 1 N N N N N N 12.108 -7.589 -19.221 -5.044 2.801 -0.206 C34 UP9 25 UP9 C36 C26 C 0 1 N N N N N N 13.081 -6.272 -21.003 -3.664 2.624 -2.027 C36 UP9 26 UP9 C37 C27 C 0 1 N N N N N N 11.507 -6.089 -21.021 -3.594 1.328 -1.196 C37 UP9 27 UP9 C39 C28 C 0 1 N N N N N N 14.681 -7.670 -19.483 -5.042 4.811 -1.681 C39 UP9 28 UP9 F13 F1 F 0 1 N N N N N N 7.392 -7.016 -15.321 -3.925 -2.886 0.662 F13 UP9 29 UP9 N07 N1 N 0 1 N N N N N N 9.528 -6.225 -16.990 -2.630 -0.453 0.693 N07 UP9 30 UP9 N15 N2 N 0 1 N N N N N N 8.789 -8.120 -10.588 -0.578 -6.359 -0.799 N15 UP9 31 UP9 N17 N3 N 0 1 Y N N N N N 12.308 -6.709 -13.026 1.371 -2.368 -0.710 N17 UP9 32 UP9 N25 N4 N 0 1 N N N N N N 17.766 -4.621 -14.918 4.985 1.946 0.171 N25 UP9 33 UP9 N29 N5 N 0 1 N N N N N N 20.094 -3.057 -13.666 7.539 1.049 0.832 N29 UP9 34 UP9 N33 N6 N 0 1 N N N N N N 10.991 -6.933 -19.885 -4.512 1.579 -0.075 N33 UP9 35 UP9 N35 N7 N 0 1 N N N N N N 13.324 -7.212 -19.863 -4.620 3.463 -1.291 N35 UP9 36 UP9 O16 O1 O 0 1 N N N N N N 10.934 -7.445 -10.675 1.258 -5.148 -1.117 O16 UP9 37 UP9 O26 O2 O 0 1 N N N N N N 17.184 -6.520 -15.954 3.664 2.812 -1.386 O26 UP9 38 UP9 O38 O3 O 0 1 N N N N N N 12.053 -8.345 -18.256 -5.843 3.264 0.584 O38 UP9 39 UP9 H111 H1 H 0 0 N N N N N N 9.127 -7.905 -20.073 -5.872 0.467 1.071 H111 UP9 40 UP9 H102 H2 H 0 0 N N N N N N 7.618 -6.090 -19.799 -4.781 2.194 2.510 H102 UP9 41 UP9 H101 H3 H 0 0 N N N N N N 8.904 -5.531 -20.921 -4.552 0.550 3.154 H101 UP9 42 UP9 H121 H4 H 0 0 N N N N N N 9.790 -8.206 -17.698 -4.304 -1.386 1.553 H121 UP9 43 UP9 H122 H5 H 0 0 N N N N N N 8.142 -7.528 -17.925 -4.418 -1.098 -0.200 H122 UP9 44 UP9 H051 H6 H 0 0 N N N N N N 7.742 -7.554 -12.911 -2.487 -4.928 -0.052 H051 UP9 45 UP9 H081 H7 H 0 0 N N N N N N 7.731 -5.140 -17.260 -1.044 0.199 1.906 H081 UP9 46 UP9 H082 H8 H 0 0 N N N N N N 9.171 -4.143 -16.860 -2.358 -0.638 2.767 H082 UP9 47 UP9 H092 H9 H 0 0 N N N N N N 8.307 -3.824 -19.206 -2.540 2.124 1.480 H092 UP9 48 UP9 H091 H10 H 0 0 N N N N N N 10.026 -4.338 -19.117 -2.421 1.793 3.226 H091 UP9 49 UP9 H202 H11 H 0 0 N N N N N N 14.786 -5.479 -13.097 3.655 -0.770 -0.339 H202 UP9 50 UP9 H201 H12 H 0 0 N N N N N N 15.087 -7.045 -13.925 2.963 -0.083 -1.832 H201 UP9 51 UP9 H211 H13 H 0 0 N N N N N N 14.996 -4.235 -15.088 2.678 0.988 1.010 H211 UP9 52 UP9 H222 H14 H 0 0 N N N N N N 14.792 -5.144 -17.330 1.312 2.807 -0.136 H222 UP9 53 UP9 H221 H15 H 0 0 N N N N N N 14.767 -6.823 -16.694 1.245 1.753 -1.569 H221 UP9 54 UP9 H231 H16 H 0 0 N N N N N N 12.558 -6.408 -17.258 -0.767 1.325 -0.293 H231 UP9 55 UP9 H232 H17 H 0 0 N N N N N N 12.614 -4.714 -16.663 0.162 1.162 1.222 H232 UP9 56 UP9 H271 H18 H 0 0 N N N N N N 17.136 -2.579 -14.960 6.375 3.500 0.458 H271 UP9 57 UP9 H272 H19 H 0 0 N N N N N N 16.614 -3.501 -13.509 5.927 3.195 -1.239 H272 UP9 58 UP9 H281 H20 H 0 0 N N N N N N 18.548 -1.519 -13.498 7.153 1.079 -1.233 H281 UP9 59 UP9 H282 H21 H 0 0 N N N N N N 18.424 -2.827 -12.272 8.238 2.364 -0.650 H282 UP9 60 UP9 H301 H22 H 0 0 N N N N N N 21.121 -4.868 -14.129 6.580 -0.375 2.043 H301 UP9 61 UP9 H302 H23 H 0 0 N N N N N N 19.703 -5.059 -13.044 6.205 -0.487 0.306 H302 UP9 62 UP9 H312 H24 H 0 0 N N N N N N 19.343 -5.933 -15.388 4.262 0.446 1.459 H312 UP9 63 UP9 H311 H25 H 0 0 N N N N N N 19.538 -4.252 -15.992 5.276 1.685 2.241 H311 UP9 64 UP9 H321 H26 H 0 0 N N N N N N 21.755 -2.674 -14.996 9.628 0.927 0.642 H321 UP9 65 UP9 H322 H27 H 0 0 N N N N N N 20.135 -2.458 -15.742 8.898 -0.274 1.736 H322 UP9 66 UP9 H323 H28 H 0 0 N N N N N N 20.768 -1.227 -14.597 8.727 -0.456 -0.026 H323 UP9 67 UP9 H362 H29 H 0 0 N N N N N N 13.584 -5.309 -20.830 -2.685 3.100 -2.075 H362 UP9 68 UP9 H361 H30 H 0 0 N N N N N N 13.435 -6.706 -21.950 -4.036 2.415 -3.030 H361 UP9 69 UP9 H371 H31 H 0 0 N N N N N N 11.090 -6.436 -21.978 -3.934 0.476 -1.786 H371 UP9 70 UP9 H372 H32 H 0 0 N N N N N N 11.241 -5.033 -20.867 -2.580 1.160 -0.834 H372 UP9 71 UP9 H391 H33 H 0 0 N N N N N N 15.424 -7.215 -20.155 -5.686 5.228 -0.907 H391 UP9 72 UP9 H392 H34 H 0 0 N N N N N N 14.892 -7.369 -18.446 -4.165 5.445 -1.804 H392 UP9 73 UP9 H393 H35 H 0 0 N N N N N N 14.734 -8.766 -19.565 -5.590 4.762 -2.622 H393 UP9 74 UP9 H152 H36 H 0 0 N N N N N N 8.897 -8.367 -9.625 -0.120 -7.174 -1.057 H152 UP9 75 UP9 H151 H37 H 0 0 N N N N N N 7.909 -8.254 -11.043 -1.513 -6.388 -0.543 H151 UP9 76 UP9 H171 H38 H 0 0 N N N N N N 12.615 -6.881 -12.090 2.063 -2.984 -0.997 H171 UP9 77 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UP9 C01 C02 DOUB Y N 1 UP9 C01 C06 SING Y N 2 UP9 C01 N17 SING Y N 3 UP9 C02 C03 SING Y N 4 UP9 C02 C19 SING Y N 5 UP9 C03 C04 DOUB Y N 6 UP9 C03 N07 SING N N 7 UP9 C04 C05 SING Y N 8 UP9 C04 F13 SING N N 9 UP9 C05 C06 DOUB Y N 10 UP9 C06 C14 SING N N 11 UP9 N07 C08 SING N N 12 UP9 N07 C12 SING N N 13 UP9 C08 C09 SING N N 14 UP9 C09 C10 SING N N 15 UP9 C10 C11 SING N N 16 UP9 C11 C12 SING N N 17 UP9 C11 N33 SING N N 18 UP9 C14 N15 SING N N 19 UP9 C14 O16 DOUB N N 20 UP9 N17 C18 SING Y N 21 UP9 C18 C19 DOUB Y N 22 UP9 C18 C20 SING N N 23 UP9 C19 C23 SING N N 24 UP9 C20 C21 SING N N 25 UP9 C21 C22 SING N N 26 UP9 C21 C24 SING N N 27 UP9 C22 C23 SING N N 28 UP9 C24 N25 SING N N 29 UP9 C24 O26 DOUB N N 30 UP9 N25 C27 SING N N 31 UP9 N25 C31 SING N N 32 UP9 C27 C28 SING N N 33 UP9 C28 N29 SING N N 34 UP9 N29 C30 SING N N 35 UP9 N29 C32 SING N N 36 UP9 C30 C31 SING N N 37 UP9 N33 C34 SING N N 38 UP9 N33 C37 SING N N 39 UP9 C34 N35 SING N N 40 UP9 C34 O38 DOUB N N 41 UP9 N35 C36 SING N N 42 UP9 N35 C39 SING N N 43 UP9 C36 C37 SING N N 44 UP9 C11 H111 SING N N 45 UP9 C10 H102 SING N N 46 UP9 C10 H101 SING N N 47 UP9 C12 H121 SING N N 48 UP9 C12 H122 SING N N 49 UP9 C05 H051 SING N N 50 UP9 C08 H081 SING N N 51 UP9 C08 H082 SING N N 52 UP9 C09 H092 SING N N 53 UP9 C09 H091 SING N N 54 UP9 C20 H202 SING N N 55 UP9 C20 H201 SING N N 56 UP9 C21 H211 SING N N 57 UP9 C22 H222 SING N N 58 UP9 C22 H221 SING N N 59 UP9 C23 H231 SING N N 60 UP9 C23 H232 SING N N 61 UP9 C27 H271 SING N N 62 UP9 C27 H272 SING N N 63 UP9 C28 H281 SING N N 64 UP9 C28 H282 SING N N 65 UP9 C30 H301 SING N N 66 UP9 C30 H302 SING N N 67 UP9 C31 H312 SING N N 68 UP9 C31 H311 SING N N 69 UP9 C32 H321 SING N N 70 UP9 C32 H322 SING N N 71 UP9 C32 H323 SING N N 72 UP9 C36 H362 SING N N 73 UP9 C36 H361 SING N N 74 UP9 C37 H371 SING N N 75 UP9 C37 H372 SING N N 76 UP9 C39 H391 SING N N 77 UP9 C39 H392 SING N N 78 UP9 C39 H393 SING N N 79 UP9 N15 H152 SING N N 80 UP9 N15 H151 SING N N 81 UP9 N17 H171 SING N N 82 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UP9 SMILES ACDLabs 12.01 "O=C(N1CCN(C)CC1)C1Cc2[NH]c3c(cc(F)c(N4CCCC(C4)N4CCN(C)C4=O)c3c2CC1)C(N)=O" UP9 InChI InChI 1.06 "InChI=1S/C28H38FN7O3/c1-32-8-11-34(12-9-32)27(38)17-5-6-19-22(14-17)31-24-20(26(30)37)15-21(29)25(23(19)24)35-7-3-4-18(16-35)36-13-10-33(2)28(36)39/h15,17-18,31H,3-14,16H2,1-2H3,(H2,30,37)/t17-,18-/m0/s1" UP9 InChIKey InChI 1.06 HAKSZOOIIKBVPT-ROUUACIJSA-N UP9 SMILES_CANONICAL CACTVS 3.385 "CN1CCN(CC1)C(=O)[C@H]2CCc3c(C2)[nH]c4c(cc(F)c(N5CCC[C@H](C5)N6CCN(C)C6=O)c34)C(N)=O" UP9 SMILES CACTVS 3.385 "CN1CCN(CC1)C(=O)[CH]2CCc3c(C2)[nH]c4c(cc(F)c(N5CCC[CH](C5)N6CCN(C)C6=O)c34)C(N)=O" UP9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)C(=O)[C@H]2CCc3c([nH]c4c3c(c(cc4C(=O)N)F)N5CCC[C@H](C5)N6CCN(C6=O)C)C2" UP9 SMILES "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)C(=O)C2CCc3c([nH]c4c3c(c(cc4C(=O)N)F)N5CCCC(C5)N6CCN(C6=O)C)C2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier UP9 "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-6-fluoro-5-[(3S)-3-(3-methyl-2-oxoimidazolidin-1-yl)piperidin-1-yl]-2-(4-methylpiperazine-1-carbonyl)-2,3,4,9-tetrahydro-1H-carbazole-8-carboxamide" UP9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(7~{S})-3-fluoranyl-4-[(3~{R})-3-(3-methyl-2-oxidanylidene-imidazolidin-1-yl)piperidin-1-yl]-7-(4-methylpiperazin-1-yl)carbonyl-6,7,8,9-tetrahydro-5~{H}-carbazole-1-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UP9 "Create component" 2023-09-06 RCSB UP9 "Initial release" 2024-01-31 RCSB #