data_UPH # _chem_comp.id UPH _chem_comp.name "(2R,3R,4R,5S)-2-(hydroxymethyl)-1-(6-{2-nitro-4-[(1R,5S)-3-oxa-8-azabicyclo[3.2.1]octan-8-yl]anilino}hexyl)piperidine-3,4,5-triol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H38 N4 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-08-23 _chem_comp.pdbx_modified_date 2023-02-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 494.581 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UPH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8E5U _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UPH N1 N1 N 0 1 N N N -35.573 -30.677 -69.067 6.436 -0.019 -0.007 N1 UPH 1 UPH N3 N2 N 1 1 N N N -40.245 -28.052 -61.573 -4.287 3.084 0.775 N3 UPH 2 UPH C4 C1 C 0 1 N N N -33.889 -29.077 -68.318 7.563 1.842 -1.129 C4 UPH 3 UPH C5 C2 C 0 1 N N N -36.625 -29.974 -68.366 5.295 0.876 0.228 C5 UPH 4 UPH C6 C3 C 0 1 N N N -36.429 -30.285 -66.860 3.992 0.123 -0.049 C6 UPH 5 UPH C7 C4 C 0 1 N N N -37.772 -30.206 -66.175 2.803 1.055 0.195 C7 UPH 6 UPH C8 C5 C 0 1 N N N -37.796 -29.870 -64.681 1.500 0.303 -0.081 C8 UPH 7 UPH C10 C6 C 0 1 N N N -39.280 -30.574 -62.686 -0.992 0.482 -0.114 C10 UPH 8 UPH C13 C7 C 0 1 Y N N -42.630 -27.468 -62.061 -5.805 1.261 0.056 C13 UPH 9 UPH C15 C8 C 0 1 N N S -45.852 -26.702 -61.626 -7.323 -1.871 -1.173 C15 UPH 10 UPH C17 C9 C 0 1 N N N -45.257 -25.605 -64.369 -9.507 -0.925 0.346 C17 UPH 11 UPH C20 C10 C 0 1 N N N -46.012 -25.242 -61.080 -6.957 -2.747 0.049 C20 UPH 12 UPH C21 C11 C 0 1 Y N N -44.144 -29.072 -63.155 -4.939 -0.831 -0.754 C21 UPH 13 UPH C22 C12 C 0 1 Y N N -43.182 -29.993 -63.220 -3.651 -0.370 -0.568 C22 UPH 14 UPH C24 C13 C 0 1 N N S -34.946 -32.708 -70.188 7.612 -2.060 0.666 C24 UPH 15 UPH C1 C14 C 0 1 N N R -33.571 -32.670 -69.565 8.949 -1.318 0.576 C1 UPH 16 UPH C11 C15 C 0 1 Y N N -41.758 -29.702 -62.683 -3.436 0.908 -0.069 C11 UPH 17 UPH C12 C16 C 0 1 Y N N -41.516 -28.506 -62.135 -4.517 1.722 0.243 C12 UPH 18 UPH C14 C17 C 0 1 Y N N -43.837 -27.700 -62.518 -6.020 -0.017 -0.443 C14 UPH 19 UPH C16 C18 C 0 1 N N N -47.001 -27.043 -62.533 -8.776 -2.200 -1.559 C16 UPH 20 UPH C18 C19 C 0 1 N N R -44.621 -25.473 -62.996 -8.031 -0.638 0.671 C18 UPH 21 UPH C19 C20 C 0 1 N N N -45.427 -24.435 -62.127 -7.426 -1.929 1.271 C19 UPH 22 UPH C2 C21 C 0 1 N N R -33.265 -31.192 -69.403 8.835 -0.203 -0.467 C2 UPH 23 UPH C23 C22 C 0 1 N N N -35.895 -32.095 -69.144 6.505 -1.065 1.022 C23 UPH 24 UPH C3 C23 C 0 1 N N R -34.256 -30.551 -68.449 7.693 0.738 -0.079 C3 UPH 25 UPH C9 C24 C 0 1 N N N -38.523 -31.035 -63.952 0.312 1.235 0.163 C9 UPH 26 UPH N2 N3 N 0 1 N N N -40.737 -30.747 -62.778 -2.130 1.375 0.120 N2 UPH 27 UPH N4 N4 N 0 1 N N N -44.793 -26.607 -62.380 -7.326 -0.484 -0.632 N4 UPH 28 UPH O1 O1 O 0 1 N N N -32.662 -33.193 -70.487 9.977 -2.232 0.189 O1 UPH 29 UPH O2 O2 O 0 1 N N N -31.953 -31.052 -68.918 10.061 0.530 -0.517 O2 UPH 30 UPH O3 O3 O 0 1 N N N -34.036 -28.487 -69.610 7.360 1.255 -2.416 O3 UPH 31 UPH O4 O4 O 0 1 N N N -39.519 -28.793 -61.012 -5.017 3.529 1.643 O4 UPH 32 UPH O5 O5 O -1 1 N N N -39.958 -26.900 -61.658 -3.370 3.760 0.345 O5 UPH 33 UPH O6 O6 O 0 1 N N N -46.586 -26.667 -64.138 -9.589 -2.152 -0.384 O6 UPH 34 UPH O7 O7 O 0 1 N N N -35.195 -34.063 -70.417 7.692 -3.066 1.678 O7 UPH 35 UPH H2 H2 H 0 1 N N N -34.561 -28.584 -67.600 6.714 2.480 -0.883 H2 UPH 36 UPH H3 H3 H 0 1 N N N -32.849 -28.977 -67.975 8.474 2.440 -1.142 H3 UPH 37 UPH H4 H4 H 0 1 N N N -36.544 -28.892 -68.545 5.306 1.214 1.264 H4 UPH 38 UPH H5 H5 H 0 1 N N N -37.610 -30.329 -68.703 5.366 1.736 -0.437 H5 UPH 39 UPH H6 H6 H 0 1 N N N -36.011 -31.296 -66.741 3.981 -0.216 -1.085 H6 UPH 40 UPH H7 H7 H 0 1 N N N -35.742 -29.550 -66.416 3.921 -0.738 0.616 H7 UPH 41 UPH H8 H8 H 0 1 N N N -38.359 -29.434 -66.694 2.814 1.394 1.231 H8 UPH 42 UPH H9 H9 H 0 1 N N N -38.261 -31.184 -66.299 2.874 1.916 -0.470 H9 UPH 43 UPH H10 H10 H 0 1 N N N -36.768 -29.773 -64.301 1.489 -0.036 -1.117 H10 UPH 44 UPH H11 H11 H 0 1 N N N -38.339 -28.927 -64.517 1.429 -0.558 0.584 H11 UPH 45 UPH H12 H12 H 0 1 N N N -38.913 -31.158 -61.829 -1.003 0.143 -1.150 H12 UPH 46 UPH H13 H13 H 0 1 N N N -39.066 -29.508 -62.521 -1.062 -0.379 0.551 H13 UPH 47 UPH H14 H14 H 0 1 N N N -42.418 -26.507 -61.616 -6.645 1.893 0.303 H14 UPH 48 UPH H15 H15 H 0 1 N N N -45.768 -27.418 -60.795 -6.631 -2.005 -2.004 H15 UPH 49 UPH H16 H16 H 0 1 N N N -45.602 -24.626 -64.732 -10.075 -1.013 1.273 H16 UPH 50 UPH H17 H17 H 0 1 N N N -44.542 -26.031 -65.088 -9.914 -0.112 -0.255 H17 UPH 51 UPH H19 H19 H 0 1 N N N -47.072 -24.989 -60.933 -7.483 -3.700 0.005 H19 UPH 52 UPH H20 H20 H 0 1 N N N -45.469 -25.113 -60.132 -5.879 -2.908 0.091 H20 UPH 53 UPH H21 H21 H 0 1 N N N -45.129 -29.284 -63.544 -5.107 -1.825 -1.142 H21 UPH 54 UPH H22 H22 H 0 1 N N N -43.399 -30.958 -63.654 -2.810 -1.004 -0.810 H22 UPH 55 UPH H23 H23 H 0 1 N N N -34.967 -32.116 -71.115 7.389 -2.525 -0.294 H23 UPH 56 UPH H24 H24 H 0 1 N N N -33.555 -33.190 -68.596 9.191 -0.886 1.547 H24 UPH 57 UPH H25 H25 H 0 1 N N N -47.224 -28.117 -62.454 -9.135 -1.469 -2.283 H25 UPH 58 UPH H26 H26 H 0 1 N N N -47.887 -26.462 -62.237 -8.821 -3.199 -1.994 H26 UPH 59 UPH H27 H27 H 0 1 N N N -43.571 -25.157 -63.082 -7.910 0.224 1.327 H27 UPH 60 UPH H28 H28 H 0 1 N N N -46.208 -23.945 -62.727 -8.183 -2.480 1.829 H28 UPH 61 UPH H29 H29 H 0 1 N N N -44.756 -23.672 -61.705 -6.579 -1.688 1.915 H29 UPH 62 UPH H30 H30 H 0 1 N N N -33.359 -30.705 -70.385 8.631 -0.639 -1.445 H30 UPH 63 UPH H31 H31 H 0 1 N N N -35.741 -32.572 -68.165 6.722 -0.611 1.988 H31 UPH 64 UPH H32 H32 H 0 1 N N N -36.941 -32.230 -69.457 5.550 -1.588 1.072 H32 UPH 65 UPH H33 H33 H 0 1 N N N -34.223 -31.045 -67.467 7.904 1.184 0.893 H33 UPH 66 UPH H34 H34 H 0 1 N N N -39.245 -31.488 -64.647 0.323 1.574 1.199 H34 UPH 67 UPH H35 H35 H 0 1 N N N -37.775 -31.787 -63.659 0.382 2.095 -0.502 H35 UPH 68 UPH H36 H36 H 0 1 N N N -40.889 -31.175 -63.669 -1.978 2.289 0.406 H36 UPH 69 UPH H37 H37 H 0 1 N N N -31.788 -33.178 -70.114 10.101 -2.968 0.803 H37 UPH 70 UPH H38 H38 H 0 1 N N N -31.751 -30.130 -68.813 10.830 -0.006 -0.754 H38 UPH 71 UPH H39 H39 H 0 1 N N N -33.814 -27.564 -69.564 7.269 1.898 -3.132 H39 UPH 72 UPH H41 H41 H 0 1 N N N -36.053 -34.165 -70.812 6.879 -3.577 1.789 H41 UPH 73 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UPH N1 C5 SING N N 1 UPH N1 C23 SING N N 2 UPH N1 C3 SING N N 3 UPH N3 C12 SING N N 4 UPH N3 O4 DOUB N N 5 UPH N3 O5 SING N N 6 UPH C4 C3 SING N N 7 UPH C4 O3 SING N N 8 UPH C5 C6 SING N N 9 UPH C6 C7 SING N N 10 UPH C7 C8 SING N N 11 UPH C8 C9 SING N N 12 UPH C10 C9 SING N N 13 UPH C10 N2 SING N N 14 UPH C13 C12 DOUB Y N 15 UPH C13 C14 SING Y N 16 UPH C15 C20 SING N N 17 UPH C15 C16 SING N N 18 UPH C15 N4 SING N N 19 UPH C17 C18 SING N N 20 UPH C20 C19 SING N N 21 UPH C21 C22 SING Y N 22 UPH C21 C14 DOUB Y N 23 UPH C22 C11 DOUB Y N 24 UPH C24 C1 SING N N 25 UPH C24 C23 SING N N 26 UPH C24 O7 SING N N 27 UPH C1 C2 SING N N 28 UPH C1 O1 SING N N 29 UPH C11 C12 SING Y N 30 UPH C11 N2 SING N N 31 UPH C14 N4 SING N N 32 UPH C18 C19 SING N N 33 UPH C18 N4 SING N N 34 UPH C2 C3 SING N N 35 UPH C2 O2 SING N N 36 UPH C16 O6 SING N N 37 UPH C4 H2 SING N N 38 UPH C4 H3 SING N N 39 UPH C5 H4 SING N N 40 UPH C5 H5 SING N N 41 UPH C6 H6 SING N N 42 UPH C6 H7 SING N N 43 UPH C7 H8 SING N N 44 UPH C7 H9 SING N N 45 UPH C8 H10 SING N N 46 UPH C8 H11 SING N N 47 UPH C10 H12 SING N N 48 UPH C10 H13 SING N N 49 UPH C13 H14 SING N N 50 UPH C15 H15 SING N N 51 UPH C17 H16 SING N N 52 UPH C17 H17 SING N N 53 UPH C20 H19 SING N N 54 UPH C20 H20 SING N N 55 UPH C21 H21 SING N N 56 UPH C22 H22 SING N N 57 UPH C24 H23 SING N N 58 UPH C1 H24 SING N N 59 UPH C16 H25 SING N N 60 UPH C16 H26 SING N N 61 UPH C18 H27 SING N N 62 UPH C19 H28 SING N N 63 UPH C19 H29 SING N N 64 UPH C2 H30 SING N N 65 UPH C23 H31 SING N N 66 UPH C23 H32 SING N N 67 UPH C3 H33 SING N N 68 UPH C9 H34 SING N N 69 UPH C9 H35 SING N N 70 UPH N2 H36 SING N N 71 UPH O1 H37 SING N N 72 UPH O2 H38 SING N N 73 UPH O3 H39 SING N N 74 UPH O7 H41 SING N N 75 UPH O6 C17 SING N N 76 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UPH SMILES ACDLabs 12.01 "OCC1C(O)C(O)C(O)CN1CCCCCCNc1ccc(cc1[N+]([O-])=O)N1C2CCC1COC2" UPH InChI InChI 1.06 "InChI=1S/C24H38N4O7/c29-13-21-23(31)24(32)22(30)12-26(21)10-4-2-1-3-9-25-19-8-7-16(11-20(19)28(33)34)27-17-5-6-18(27)15-35-14-17/h7-8,11,17-18,21-25,29-32H,1-6,9-10,12-15H2/t17-,18+,21-,22+,23-,24-/m1/s1" UPH InChIKey InChI 1.06 QGCBQROIBSZCHP-OAOHXRHQSA-N UPH SMILES_CANONICAL CACTVS 3.385 "OC[C@@H]1[C@@H](O)[C@H](O)[C@@H](O)CN1CCCCCCNc2ccc(cc2[N+]([O-])=O)N3[C@H]4CC[C@@H]3COC4" UPH SMILES CACTVS 3.385 "OC[CH]1[CH](O)[CH](O)[CH](O)CN1CCCCCCNc2ccc(cc2[N+]([O-])=O)N3[CH]4CC[CH]3COC4" UPH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1N2[C@@H]3CC[C@H]2COC3)[N+](=O)[O-])NCCCCCCN4C[C@@H]([C@H]([C@@H]([C@H]4CO)O)O)O" UPH SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1N2C3CCC2COC3)[N+](=O)[O-])NCCCCCCN4CC(C(C(C4CO)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier UPH "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3R,4R,5S)-2-(hydroxymethyl)-1-(6-{2-nitro-4-[(1R,5S)-3-oxa-8-azabicyclo[3.2.1]octan-8-yl]anilino}hexyl)piperidine-3,4,5-triol" UPH "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{R},5~{S})-2-(hydroxymethyl)-1-[6-[[2-nitro-4-[(1~{S},5~{R})-3-oxa-8-azabicyclo[3.2.1]octan-8-yl]phenyl]amino]hexyl]piperidine-3,4,5-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UPH "Create component" 2022-08-23 RCSB UPH "Initial release" 2023-02-22 RCSB #