data_UPK # _chem_comp.id UPK _chem_comp.name "2-(hydroxymethyl)-5-(2-phenylimidazol-1-yl)phenol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H12 N2 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-04 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 264.279 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UPK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7NRL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UPK C02 C1 C 0 1 N N N N N N -21.234 -21.117 -3.869 4.214 -0.979 0.216 C02 UPK 1 UPK C03 C2 C 0 1 Y N N N N N -22.183 -21.421 -2.695 2.912 -0.306 0.215 C03 UPK 2 UPK C04 C3 C 0 1 Y N N N N N -23.302 -22.162 -2.913 2.652 0.726 -0.704 C04 UPK 3 UPK C06 C4 C 0 1 Y N N N N N -24.184 -22.473 -1.862 1.418 1.354 -0.696 C06 UPK 4 UPK C07 C5 C 0 1 Y N N N N N -21.885 -20.957 -1.423 1.919 -0.692 1.125 C07 UPK 5 UPK C08 C6 C 0 1 Y N N N N N -22.786 -21.262 -0.366 0.707 -0.065 1.122 C08 UPK 6 UPK C09 C7 C 0 1 Y N N N N N -23.899 -21.995 -0.598 0.448 0.962 0.216 C09 UPK 7 UPK C11 C8 C 0 1 Y N N N N N -24.634 -23.058 1.596 -2.017 0.997 0.079 C11 UPK 8 UPK C12 C9 C 0 1 Y N N N N N -23.266 -23.752 1.991 -2.254 -0.450 -0.114 C12 UPK 9 UPK C13 C10 C 0 1 Y N N N N N -22.536 -24.486 0.988 -3.507 -0.998 0.163 C13 UPK 10 UPK C14 C11 C 0 1 Y N N N N N -21.356 -25.097 1.327 -3.722 -2.349 -0.020 C14 UPK 11 UPK C15 C12 C 0 1 Y N N N N N -20.883 -25.007 2.650 -2.698 -3.159 -0.476 C15 UPK 12 UPK C16 C13 C 0 1 Y N N N N N -21.617 -24.291 3.619 -1.453 -2.622 -0.752 C16 UPK 13 UPK C17 C14 C 0 1 Y N N N N N -22.825 -23.662 3.280 -1.227 -1.273 -0.578 C17 UPK 14 UPK C19 C15 C 0 1 Y N N N N N -26.724 -22.411 1.658 -2.363 3.119 0.319 C19 UPK 15 UPK C20 C16 C 0 1 Y N N N N N -26.112 -21.906 0.480 -1.028 2.940 0.376 C20 UPK 16 UPK N10 N1 N 0 1 Y N N N N N -24.860 -22.314 0.468 -0.797 1.596 0.223 N10 UPK 17 UPK N18 N2 N 0 1 Y N N N N N -25.806 -23.122 2.325 -2.943 1.928 0.136 N18 UPK 18 UPK O05 O1 O 0 1 N N N N N N -23.589 -22.629 -4.129 3.604 1.105 -1.593 O05 UPK 19 UPK O1 O2 O 0 1 N Y N N N N -21.636 -21.503 -5.182 4.434 -1.873 1.007 O1 UPK 20 UPK H1 H1 H 0 1 N N N N N N -20.288 -20.624 -3.702 4.976 -0.683 -0.489 H1 UPK 21 UPK H3 H3 H 0 1 N N N N N N -25.065 -23.072 -2.040 1.210 2.148 -1.398 H3 UPK 22 UPK H4 H4 H 0 1 N N N N N N -20.991 -20.379 -1.240 2.113 -1.487 1.830 H4 UPK 23 UPK H5 H5 H 0 1 N N N N N N -22.580 -20.905 0.632 -0.055 -0.366 1.824 H5 UPK 24 UPK H6 H6 H 0 1 N N N N N N -22.915 -24.554 -0.021 -4.308 -0.366 0.519 H6 UPK 25 UPK H7 H7 H 0 1 N N N N N N -20.794 -25.643 0.584 -4.692 -2.774 0.194 H7 UPK 26 UPK H8 H8 H 0 1 N N N N N N -19.955 -25.488 2.924 -2.871 -4.216 -0.617 H8 UPK 27 UPK H9 H9 H 0 1 N N N N N N -21.246 -24.226 4.631 -0.658 -3.261 -1.107 H9 UPK 28 UPK H10 H10 H 0 1 N N N N N N -23.393 -23.119 4.022 -0.256 -0.854 -0.799 H10 UPK 29 UPK H11 H11 H 0 1 N N N N N N -27.748 -22.250 1.962 -2.876 4.066 0.403 H11 UPK 30 UPK H12 H12 H 0 1 N N N N N N -26.589 -21.296 -0.273 -0.282 3.708 0.516 H12 UPK 31 UPK H13 H13 H 0 1 N N N N N N -22.942 -22.316 -4.750 3.575 0.622 -2.430 H13 UPK 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UPK O05 C04 SING N N 1 UPK C02 C03 SING N N 2 UPK C04 C03 DOUB Y N 3 UPK C04 C06 SING Y N 4 UPK C03 C07 SING Y N 5 UPK C06 C09 DOUB Y N 6 UPK C07 C08 DOUB Y N 7 UPK C09 C08 SING Y N 8 UPK C09 N10 SING N N 9 UPK N10 C20 SING Y N 10 UPK N10 C11 SING Y N 11 UPK C20 C19 DOUB Y N 12 UPK C13 C14 DOUB Y N 13 UPK C13 C12 SING Y N 14 UPK C14 C15 SING Y N 15 UPK C11 C12 SING N N 16 UPK C11 N18 DOUB Y N 17 UPK C19 N18 SING Y N 18 UPK C12 C17 DOUB Y N 19 UPK C15 C16 DOUB Y N 20 UPK C17 C16 SING Y N 21 UPK C02 O1 DOUB N N 22 UPK C02 H1 SING N N 23 UPK C06 H3 SING N N 24 UPK C07 H4 SING N N 25 UPK C08 H5 SING N N 26 UPK C13 H6 SING N N 27 UPK C14 H7 SING N N 28 UPK C15 H8 SING N N 29 UPK C16 H9 SING N N 30 UPK C17 H10 SING N N 31 UPK C19 H11 SING N N 32 UPK C20 H12 SING N N 33 UPK O05 H13 SING N N 34 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UPK InChI InChI 1.03 "InChI=1S/C16H12N2O2/c19-11-13-6-7-14(10-15(13)20)18-9-8-17-16(18)12-4-2-1-3-5-12/h1-11,20H" UPK InChIKey InChI 1.03 KMBWPCASOARYEQ-UHFFFAOYSA-N UPK SMILES_CANONICAL CACTVS 3.385 "Oc1cc(ccc1C=O)n2ccnc2c3ccccc3" UPK SMILES CACTVS 3.385 "Oc1cc(ccc1C=O)n2ccnc2c3ccccc3" UPK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2nccn2c3ccc(c(c3)O)C=O" UPK SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2nccn2c3ccc(c(c3)O)C=O" # _pdbx_chem_comp_identifier.comp_id UPK _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-oxidanyl-4-(2-phenylimidazol-1-yl)benzaldehyde" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UPK "Create component" 2021-03-04 PDBE UPK "Initial release" 2021-06-16 RCSB UPK "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id UPK _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C02 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #