data_UPN # _chem_comp.id UPN _chem_comp.name ;2-{[(2R,3R,4R,5R,6R)-3-(acetylamino)-2-{[(S)-{[(R)-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}-5-hydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-4-yl]oxy}prop-2-enoic acid ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H29 N3 O19 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-08-01 _chem_comp.pdbx_modified_date 2012-03-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 677.400 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UPN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3SWI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UPN C1 C1 C 0 1 N N R 154.170 69.880 191.682 -4.292 1.205 -0.583 C1 UPN 1 UPN O1 O1 O 0 1 N N N 153.025 70.886 191.472 -2.870 1.104 -0.487 O1 UPN 2 UPN C2 C2 C 0 1 N N R 154.019 68.781 190.590 -4.941 0.170 0.340 C2 UPN 3 UPN N2 N2 N 0 1 N N N 154.145 69.428 189.272 -4.481 0.382 1.714 N2 UPN 4 UPN C3 C3 C 0 1 N N R 152.689 67.997 190.718 -4.543 -1.235 -0.122 C3 UPN 5 UPN O3 O3 O 0 1 N N N 152.680 67.030 189.718 -5.202 -2.210 0.688 O3 UPN 6 UPN C4 C4 C 0 1 N N R 152.540 67.295 192.111 -4.960 -1.418 -1.584 C4 UPN 7 UPN O4 O4 O 0 1 N N N 153.483 66.290 192.141 -6.382 -1.324 -1.691 O4 UPN 8 UPN C5 C5 C 0 1 N N R 152.847 68.326 193.219 -4.310 -0.321 -2.433 C5 UPN 9 UPN O5 O5 O 0 1 N N N 153.994 69.195 192.940 -4.697 0.959 -1.931 O5 UPN 10 UPN C6 C6 C 0 1 N N N 153.177 67.626 194.519 -4.770 -0.461 -3.885 C6 UPN 11 UPN O6 O6 O 0 1 N N N 152.871 68.645 195.455 -4.075 0.488 -4.698 O6 UPN 12 UPN C7 C7 C 0 1 N N N 155.277 69.877 188.707 -5.102 1.282 2.502 C7 UPN 13 UPN O7 O7 O 0 1 N N N 156.375 69.821 189.186 -6.043 1.916 2.072 O7 UPN 14 UPN C8 C8 C 0 1 N N N 155.137 70.497 187.373 -4.629 1.501 3.915 C8 UPN 15 UPN PA PA P 0 1 N N N 152.724 72.471 195.093 0.979 2.711 -0.024 PA UPN 16 UPN PB PB P 0 1 N N N 152.920 72.126 192.401 -1.886 2.360 -0.701 PB UPN 17 UPN O1A O1A O 0 1 N N N 153.165 73.855 194.937 0.681 3.736 1.002 O1A UPN 18 UPN O1B O1B O 0 1 N N N 154.123 72.804 192.145 -1.993 2.872 -2.223 O1B UPN 19 UPN C1D C1D C 0 1 N N R 149.163 74.517 197.403 5.647 -0.720 0.854 C1D UPN 20 UPN C1E C1E C 0 1 N N N 152.086 67.054 187.448 -5.177 -4.452 1.687 C1E UPN 21 UPN O1E O1E O 0 1 N N N 152.774 66.053 187.209 -4.601 -5.668 1.774 O1E UPN 22 UPN N1U N1U N 0 1 N N N 149.740 75.828 196.969 6.452 -1.191 -0.276 N1U UPN 23 UPN O2A O2A O 0 1 N N N 153.684 71.761 195.920 1.556 3.427 -1.346 O2A UPN 24 UPN O2B O2B O 0 1 N N N 151.765 72.894 191.989 -2.275 3.454 0.217 O2B UPN 25 UPN C2D C2D C 0 1 N N R 148.589 73.636 196.338 6.473 0.234 1.745 C2D UPN 26 UPN O2D O2D O 0 1 N N N 147.386 74.157 195.558 6.997 -0.465 2.876 O2D UPN 27 UPN C2E C2E C 0 1 N N N 151.572 67.093 188.787 -4.621 -3.436 0.776 C2E UPN 28 UPN O2E O2E O 0 1 N N N 151.808 67.980 186.695 -6.155 -4.194 2.360 O2E UPN 29 UPN C2U C2U C 0 1 N N N 149.158 77.046 197.381 6.711 -2.504 -0.408 C2U UPN 30 UPN O2U O2U O 0 1 N N N 148.168 77.101 198.098 6.274 -3.287 0.413 O2U UPN 31 UPN O3A O3A O 0 1 N N N 152.830 71.645 193.860 -0.370 1.913 -0.391 O3A UPN 32 UPN C3D C3D C 0 1 N N S 148.496 72.285 197.124 5.454 1.304 2.195 C3D UPN 33 UPN O3D O3D O 0 1 N N N 147.264 72.385 197.987 5.317 1.299 3.617 O3D UPN 34 UPN C3E C3E C 0 1 N N N 150.239 67.140 189.014 -3.547 -3.719 0.037 C3E UPN 35 UPN N3U N3U N 0 1 N N N 149.701 78.186 196.981 7.448 -2.964 -1.437 N3U UPN 36 UPN C4D C4D C 0 1 N N R 149.927 72.349 197.817 4.133 0.870 1.522 C4D UPN 37 UPN O4D O4D O 0 1 N N N 150.219 73.759 197.936 4.540 0.079 0.385 O4D UPN 38 UPN C4U C4U C 0 1 N N N 150.803 78.322 196.190 7.940 -2.109 -2.356 C4U UPN 39 UPN O4U O4U O 0 1 N N N 151.221 79.416 195.881 8.606 -2.524 -3.287 O4U UPN 40 UPN C5D C5D C 0 1 N N N 151.127 71.760 197.019 3.341 2.096 1.062 C5D UPN 41 UPN O5D O5D O 0 1 N N N 151.352 72.420 195.773 2.074 1.680 0.550 O5D UPN 42 UPN C5U C5U C 0 1 N N N 151.419 77.074 195.759 7.674 -0.724 -2.229 C5U UPN 43 UPN C6U C6U C 0 1 N N N 150.878 75.862 196.153 6.928 -0.291 -1.190 C6U UPN 44 UPN H1 H1 H 0 1 N N N 155.135 70.408 191.648 -4.607 2.205 -0.285 H1 UPN 45 UPN H2 H2 H 0 1 N N N 154.813 68.031 190.719 -6.025 0.273 0.298 H2 UPN 46 UPN HN2 HN2 H 0 1 N N N 153.303 69.544 188.746 -3.729 -0.125 2.058 HN2 UPN 47 UPN H3 H3 H 0 1 N N N 151.851 68.703 190.621 -3.463 -1.356 -0.033 H3 UPN 48 UPN H4 H4 H 0 1 N N N 151.527 66.895 192.266 -4.632 -2.395 -1.938 H4 UPN 49 UPN HO4 HO4 H 0 1 N N N 153.432 65.832 192.972 -6.717 -1.431 -2.592 HO4 UPN 50 UPN H5 H5 H 0 1 N N N 151.934 68.938 193.274 -3.226 -0.419 -2.384 H5 UPN 51 UPN H6 H6 H 0 1 N N N 152.574 66.719 194.673 -4.555 -1.469 -4.240 H6 UPN 52 UPN H6A H6A H 0 1 N N N 154.229 67.310 194.571 -5.842 -0.275 -3.947 H6A UPN 53 UPN HO6 HO6 H 0 1 N N N 153.038 68.328 196.335 -4.317 0.456 -5.633 HO6 UPN 54 UPN H8 H8 H 0 1 N N N 156.124 70.826 187.016 -3.781 0.847 4.120 H8 UPN 55 UPN H8A H8A H 0 1 N N N 154.719 69.762 186.669 -4.325 2.540 4.040 H8A UPN 56 UPN H8B H8B H 0 1 N N N 154.464 71.364 187.441 -5.439 1.273 4.609 H8B UPN 57 UPN HO1B HO1B H 0 0 N N N 153.934 73.645 191.746 -1.752 2.206 -2.881 HO1B UPN 58 UPN H1D H1D H 0 1 N N N 148.342 74.792 198.081 5.284 -1.566 1.438 H1D UPN 59 UPN HO1E HO1E H 0 0 N N N 153.083 66.088 186.311 -5.001 -6.301 2.385 HO1E UPN 60 UPN HO2A HO2A H 0 0 N N N 154.382 72.353 196.174 1.773 2.814 -2.062 HO2A UPN 61 UPN H2D H2D H 0 1 N N N 149.194 73.548 195.423 7.279 0.691 1.171 H2D UPN 62 UPN HO2D HO2D H 0 0 N N N 147.119 73.509 194.917 7.524 0.086 3.470 HO2D UPN 63 UPN H3D H3D H 0 1 N N N 148.355 71.318 196.619 5.755 2.290 1.843 H3D UPN 64 UPN HO3D HO3D H 0 0 N N N 147.162 71.584 198.488 6.134 1.506 4.092 HO3D UPN 65 UPN H3E H3E H 0 1 N N N 149.550 67.148 188.183 -3.194 -3.010 -0.697 H3E UPN 66 UPN H3EA H3EA H 0 0 N N N 149.864 67.169 190.027 -3.030 -4.658 0.174 H3EA UPN 67 UPN H4D H4D H 0 1 N N N 149.849 71.755 198.740 3.537 0.269 2.209 H4D UPN 68 UPN H5D H5D H 0 1 N N N 152.034 71.865 197.633 3.189 2.768 1.907 H5D UPN 69 UPN H5DA H5DA H 0 0 N N N 150.917 70.700 196.814 3.896 2.615 0.281 H5DA UPN 70 UPN H5U H5U H 0 1 N N N 152.298 77.094 195.132 8.060 -0.024 -2.955 H5U UPN 71 UPN H6U H6U H 0 1 N N N 151.335 74.939 195.830 6.715 0.762 -1.077 H6U UPN 72 UPN HN3U HN3U H 0 0 N N N 149.260 79.029 197.289 7.626 -3.914 -1.517 HN3U UPN 73 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UPN C2 C1 SING N N 1 UPN O1 C1 SING N N 2 UPN C1 O5 SING N N 3 UPN C1 H1 SING N N 4 UPN O1 PB SING N N 5 UPN N2 C2 SING N N 6 UPN C2 C3 SING N N 7 UPN C2 H2 SING N N 8 UPN C7 N2 SING N N 9 UPN N2 HN2 SING N N 10 UPN O3 C3 SING N N 11 UPN C3 C4 SING N N 12 UPN C3 H3 SING N N 13 UPN C2E O3 SING N N 14 UPN C4 O4 SING N N 15 UPN C4 C5 SING N N 16 UPN C4 H4 SING N N 17 UPN O4 HO4 SING N N 18 UPN O5 C5 SING N N 19 UPN C5 C6 SING N N 20 UPN C5 H5 SING N N 21 UPN C6 O6 SING N N 22 UPN C6 H6 SING N N 23 UPN C6 H6A SING N N 24 UPN O6 HO6 SING N N 25 UPN C8 C7 SING N N 26 UPN C7 O7 DOUB N N 27 UPN C8 H8 SING N N 28 UPN C8 H8A SING N N 29 UPN C8 H8B SING N N 30 UPN O3A PA SING N N 31 UPN O1A PA DOUB N N 32 UPN PA O5D SING N N 33 UPN PA O2A SING N N 34 UPN O2B PB DOUB N N 35 UPN O1B PB SING N N 36 UPN PB O3A SING N N 37 UPN O1B HO1B SING N N 38 UPN C2D C1D SING N N 39 UPN N1U C1D SING N N 40 UPN C1D O4D SING N N 41 UPN C1D H1D SING N N 42 UPN O2E C1E DOUB N N 43 UPN O1E C1E SING N N 44 UPN C1E C2E SING N N 45 UPN O1E HO1E SING N N 46 UPN C6U N1U SING N N 47 UPN N1U C2U SING N N 48 UPN O2A HO2A SING N N 49 UPN O2D C2D SING N N 50 UPN C2D C3D SING N N 51 UPN C2D H2D SING N N 52 UPN O2D HO2D SING N N 53 UPN C2E C3E DOUB N N 54 UPN N3U C2U SING N N 55 UPN C2U O2U DOUB N N 56 UPN C3D C4D SING N N 57 UPN C3D O3D SING N N 58 UPN C3D H3D SING N N 59 UPN O3D HO3D SING N N 60 UPN C3E H3E SING N N 61 UPN C3E H3EA SING N N 62 UPN C4U N3U SING N N 63 UPN C5D C4D SING N N 64 UPN C4D O4D SING N N 65 UPN C4D H4D SING N N 66 UPN C5U C4U SING N N 67 UPN O4U C4U DOUB N N 68 UPN O5D C5D SING N N 69 UPN C5D H5D SING N N 70 UPN C5D H5DA SING N N 71 UPN C5U C6U DOUB N N 72 UPN C5U H5U SING N N 73 UPN C6U H6U SING N N 74 UPN N3U HN3U SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UPN SMILES ACDLabs 12.01 "O=C1C=CN(C(=O)N1)C2OC(C(O)C2O)COP(=O)(OP(=O)(OC3OC(C(O)C(O\C(=C)C(=O)O)C3NC(=O)C)CO)O)O" UPN InChI InChI 1.03 ;InChI=1S/C20H29N3O19P2/c1-7(18(30)31)38-16-12(21-8(2)25)19(40-9(5-24)14(16)28)41-44(35,36)42-43(33,34)37-6-10-13(27)15(29)17(39-10)23-4-3-11(26)22-20(23)32/h3-4,9-10,12-17,19,24,27-29H,1,5-6H2,2H3,(H,21,25)(H,30,31)(H,33,34)(H,35,36)(H,22,26,32)/t9-,10-,12-,13-,14+,15-,16-,17-,19-/m1/s1 ; UPN InChIKey InChI 1.03 BEGZZYPUNCJHKP-ZDFMKFTCSA-N UPN SMILES_CANONICAL CACTVS 3.370 "CC(=O)N[C@H]1[C@H](O[C@H](CO)[C@H](O)[C@@H]1OC(=C)C(O)=O)O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=O)NC3=O" UPN SMILES CACTVS 3.370 "CC(=O)N[CH]1[CH](O[CH](CO)[CH](O)[CH]1OC(=C)C(O)=O)O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O" UPN SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "CC(=O)N[C@@H]1[C@H]([C@H]([C@H](O[C@@H]1O[P@](=O)(O)O[P@](=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)N3C=CC(=O)NC3=O)O)O)CO)O)OC(=C)C(=O)O" UPN SMILES "OpenEye OEToolkits" 1.7.2 "CC(=O)NC1C(C(C(OC1OP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)N3C=CC(=O)NC3=O)O)O)CO)O)OC(=C)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier UPN "SYSTEMATIC NAME" ACDLabs 12.01 ;2-{[(2R,3R,4R,5R,6R)-3-(acetylamino)-2-{[(S)-{[(R)-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}-5-hydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-4-yl]oxy}prop-2-enoic acid (non-preferred name) ; UPN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "2-[(2R,3R,4R,5R,6R)-3-acetamido-2-[[[(2R,3S,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-6-(hydroxymethyl)-5-oxidanyl-oxan-4-yl]oxyprop-2-enoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UPN "Create component" 2011-08-01 RCSB #