data_URK # _chem_comp.id URK _chem_comp.name "[(1S)-2-[(2,3-dimethoxyphenyl)methylamino]-1-(4-nitrophenyl)-2-oxidanylidene-ethyl] prop-2-enoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H20 N2 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "[(1~{S})-2-[(2,3-dimethoxyphenyl)methylamino]-1-(4-nitrophenyl)-2-oxidanylidene-ethyl] prop-2-enoate; FSP006" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-10 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 400.382 _chem_comp.one_letter_code ? _chem_comp.three_letter_code URK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7NT2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal URK C1 C1 C 0 1 N N N N N N 21.039 2.854 -24.373 6.033 -3.721 0.262 C1 URK 1 URK C2 C2 C 0 1 N N N N N N 20.142 3.893 -24.955 5.419 -2.643 -0.220 C2 URK 2 URK C3 C3 C 0 1 N N N N N N 20.854 4.827 -25.892 4.098 -2.258 0.296 C3 URK 3 URK O1 O1 O 0 1 N N N N N N 20.961 4.303 -27.132 3.476 -1.166 -0.192 O1 URK 4 URK C4 C4 C 0 1 N N S N N N 21.192 5.229 -28.225 2.173 -0.846 0.365 C4 URK 5 URK C5 C5 C 0 1 Y N N N N N 21.800 4.462 -29.377 1.959 0.645 0.315 C5 URK 6 URK C6 C6 C 0 1 Y N N N N N 22.515 3.298 -29.131 1.349 1.291 1.375 C6 URK 7 URK C7 C7 C 0 1 Y N N N N N 23.067 2.568 -30.165 1.152 2.658 1.329 C7 URK 8 URK C8 C8 C 0 1 Y N N N N N 22.895 3.034 -31.464 1.564 3.380 0.224 C8 URK 9 URK N1 N1 N 1 1 N N N N N N 23.452 2.260 -32.548 1.352 4.844 0.175 N1 URK 10 URK O2 O2 O 0 1 N N N N N N 24.589 2.495 -32.914 0.815 5.413 1.108 O2 URK 11 URK O3 O3 O -1 1 N N N N N N 22.756 1.386 -33.028 1.715 5.479 -0.799 O3 URK 12 URK C9 C9 C 0 1 Y N N N N N 22.171 4.189 -31.750 2.174 2.734 -0.835 C9 URK 13 URK C10 C10 C 0 1 Y N N N N N 21.638 4.898 -30.690 2.376 1.367 -0.787 C10 URK 14 URK C11 C11 C 0 1 N N N N N N 19.868 5.907 -28.652 1.101 -1.535 -0.439 C11 URK 15 URK N2 N2 N 0 1 N N N N N N 19.947 7.212 -28.932 -0.186 -1.464 -0.045 N2 URK 16 URK C12 C12 C 0 1 N N N N N N 19.099 8.223 -28.295 -1.229 -2.134 -0.826 C12 URK 17 URK C13 C13 C 0 1 Y N N N N N 18.212 9.029 -29.212 -2.570 -1.902 -0.177 C13 URK 18 URK C14 C14 C 0 1 Y N N N N N 17.385 10.013 -28.662 -3.238 -0.705 -0.376 C14 URK 19 URK O4 O4 O 0 1 N N N N N N 17.428 10.204 -27.304 -2.686 0.262 -1.157 O4 URK 20 URK C15 C15 C 0 1 N N N N N N 16.428 9.528 -26.540 -3.002 0.231 -2.550 C15 URK 21 URK C16 C16 C 0 1 Y N N N N N 16.537 10.784 -29.483 -4.476 -0.495 0.224 C16 URK 22 URK O5 O5 O 0 1 N N N N N N 15.790 11.738 -28.834 -5.136 0.679 0.031 O5 URK 23 URK C17 C17 C 0 1 N N N N N N 14.390 11.823 -29.095 -6.402 0.825 0.678 C17 URK 24 URK C18 C18 C 0 1 Y N N N N N 16.534 10.560 -30.849 -5.034 -1.483 1.018 C18 URK 25 URK C19 C19 C 0 1 Y N N N N N 17.341 9.580 -31.396 -4.362 -2.676 1.212 C19 URK 26 URK C20 C20 C 0 1 Y N N N N N 18.169 8.832 -30.590 -3.135 -2.887 0.612 C20 URK 27 URK O6 O6 O 0 1 N N N N N N 18.842 5.231 -28.796 1.395 -2.153 -1.440 O6 URK 28 URK O7 O7 O 0 1 N N N N N N 21.260 5.920 -25.595 3.566 -2.924 1.163 O7 URK 29 URK H1 H1 H 0 1 N N N N N N 22.085 2.832 -24.641 5.561 -4.312 1.032 H1 URK 30 URK H2 H2 H 0 1 N N N N N N 20.643 2.123 -23.684 7.002 -4.006 -0.121 H2 URK 31 URK H4 H4 H 0 1 N N N N N N 19.089 3.967 -24.727 5.891 -2.051 -0.990 H4 URK 32 URK H6 H6 H 0 1 N N N N N N 21.897 6.011 -27.906 2.127 -1.186 1.400 H6 URK 33 URK H7 H7 H 0 1 N N N N N N 22.642 2.958 -28.114 1.027 0.727 2.238 H7 URK 34 URK H8 H8 H 0 1 N N N N N N 23.618 1.660 -29.970 0.675 3.163 2.156 H8 URK 35 URK H9 H9 H 0 1 N N N N N N 22.030 4.520 -32.768 2.496 3.297 -1.698 H9 URK 36 URK H10 H10 H 0 1 N N N N N N 21.086 5.806 -30.883 2.853 0.862 -1.614 H10 URK 37 URK H11 H11 H 0 1 N N N N N N 20.618 7.513 -29.610 -0.422 -0.970 0.756 H11 URK 38 URK H12 H12 H 0 1 N N N N N N 19.758 8.926 -27.764 -1.241 -1.730 -1.839 H12 URK 39 URK H13 H13 H 0 1 N N N N N N 18.451 7.708 -27.570 -1.024 -3.204 -0.864 H13 URK 40 URK H14 H14 H 0 1 N N N N N N 16.564 9.757 -25.473 -2.498 1.054 -3.056 H14 URK 41 URK H15 H15 H 0 1 N N N N N N 15.431 9.864 -26.862 -2.669 -0.715 -2.977 H15 URK 42 URK H16 H16 H 0 1 N N N N N N 16.518 8.443 -26.697 -4.080 0.329 -2.681 H16 URK 43 URK H17 H17 H 0 1 N N N N N N 13.953 12.635 -28.495 -6.819 1.804 0.442 H17 URK 44 URK H18 H18 H 0 1 N N N N N N 14.228 12.029 -30.163 -7.080 0.046 0.329 H18 URK 45 URK H19 H19 H 0 1 N N N N N N 13.909 10.870 -28.828 -6.271 0.736 1.757 H19 URK 46 URK H20 H20 H 0 1 N N N N N N 15.899 11.153 -31.490 -5.995 -1.322 1.485 H20 URK 47 URK H21 H21 H 0 1 N N N N N N 17.322 9.400 -32.461 -4.799 -3.445 1.831 H21 URK 48 URK H22 H22 H 0 1 N N N N N N 18.799 8.076 -31.036 -2.613 -3.819 0.766 H22 URK 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal URK O3 N1 SING N N 1 URK O2 N1 DOUB N N 2 URK N1 C8 SING N N 3 URK C9 C8 DOUB Y N 4 URK C9 C10 SING Y N 5 URK C8 C7 SING Y N 6 URK C19 C18 DOUB Y N 7 URK C19 C20 SING Y N 8 URK C18 C16 SING Y N 9 URK C10 C5 DOUB Y N 10 URK C20 C13 DOUB Y N 11 URK C7 C6 DOUB Y N 12 URK C16 O5 SING N N 13 URK C16 C14 DOUB Y N 14 URK C5 C6 SING Y N 15 URK C5 C4 SING N N 16 URK C13 C14 SING Y N 17 URK C13 C12 SING N N 18 URK C17 O5 SING N N 19 URK N2 C11 SING N N 20 URK N2 C12 SING N N 21 URK O6 C11 DOUB N N 22 URK C14 O4 SING N N 23 URK C11 C4 SING N N 24 URK C4 O1 SING N N 25 URK O4 C15 SING N N 26 URK O1 C3 SING N N 27 URK C3 O7 DOUB N N 28 URK C3 C2 SING N N 29 URK C2 C1 DOUB N N 30 URK C1 H1 SING N N 31 URK C1 H2 SING N N 32 URK C2 H4 SING N N 33 URK C4 H6 SING N N 34 URK C6 H7 SING N N 35 URK C7 H8 SING N N 36 URK C9 H9 SING N N 37 URK C10 H10 SING N N 38 URK N2 H11 SING N N 39 URK C12 H12 SING N N 40 URK C12 H13 SING N N 41 URK C15 H14 SING N N 42 URK C15 H15 SING N N 43 URK C15 H16 SING N N 44 URK C17 H17 SING N N 45 URK C17 H18 SING N N 46 URK C17 H19 SING N N 47 URK C18 H20 SING N N 48 URK C19 H21 SING N N 49 URK C20 H22 SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor URK InChI InChI 1.03 "InChI=1S/C20H20N2O7/c1-4-17(23)29-19(13-8-10-15(11-9-13)22(25)26)20(24)21-12-14-6-5-7-16(27-2)18(14)28-3/h4-11,19H,1,12H2,2-3H3,(H,21,24)/t19-/m0/s1" URK InChIKey InChI 1.03 KRUSHXMEHBIKCV-IBGZPJMESA-N URK SMILES_CANONICAL CACTVS 3.385 "COc1cccc(CNC(=O)[C@@H](OC(=O)C=C)c2ccc(cc2)[N+]([O-])=O)c1OC" URK SMILES CACTVS 3.385 "COc1cccc(CNC(=O)[CH](OC(=O)C=C)c2ccc(cc2)[N+]([O-])=O)c1OC" URK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1cccc(c1OC)CNC(=O)[C@H](c2ccc(cc2)[N+](=O)[O-])OC(=O)C=C" URK SMILES "OpenEye OEToolkits" 2.0.7 "COc1cccc(c1OC)CNC(=O)C(c2ccc(cc2)[N+](=O)[O-])OC(=O)C=C" # _pdbx_chem_comp_identifier.comp_id URK _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(1~{S})-2-[(2,3-dimethoxyphenyl)methylamino]-1-(4-nitrophenyl)-2-oxidanylidene-ethyl] prop-2-enoate" # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 URK "[(1~{S})-2-[(2,3-dimethoxyphenyl)methylamino]-1-(4-nitrophenyl)-2-oxidanylidene-ethyl] prop-2-enoate" PDB ? 2 URK FSP006 AUTHOR ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site URK "Create component" 2021-03-10 PDBE URK "Initial release" 2021-06-16 RCSB URK "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id URK _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #