data_URR # _chem_comp.id URR _chem_comp.name "N~2~-(ethoxycarbonyl)-N-{(1S,2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]-1-sulfanylpropan-2-yl}-L-leucinamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H37 N3 O9 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-08-23 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 575.695 _chem_comp.one_letter_code ? _chem_comp.three_letter_code URR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8E5X _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal URR C11 C1 C 0 1 N N N N N N -16.017 -2.209 3.779 6.094 -2.962 -0.980 C11 URR 1 URR C12 C2 C 0 1 N N N N N N -15.135 -3.154 1.834 5.099 -4.695 0.204 C12 URR 2 URR C13 C3 C 0 1 N N N N N N -15.793 -4.282 2.615 4.561 -3.391 0.835 C13 URR 3 URR C5 C4 C 0 1 N N N N N N -23.815 -8.098 4.626 2.552 3.339 -2.399 C5 URR 4 URR C10 C5 C 0 1 N N S N N N -16.659 -3.578 3.651 4.923 -2.346 -0.246 C10 URR 5 URR C1 C6 C 0 1 N N N N N N -21.406 -3.881 1.794 -1.615 0.089 -0.549 C1 URR 6 URR C2 C7 C 0 1 N N S N N N -21.081 -5.512 3.575 0.783 0.513 -0.480 C2 URR 7 URR C3 C8 C 0 1 N N N N N N -21.731 -6.820 4.025 0.985 1.904 -1.085 C3 URR 8 URR C4 C9 C 0 1 N N N N N N -23.259 -6.819 4.024 2.264 1.913 -1.926 C4 URR 9 URR C6 C10 C 0 1 N N N N N N -23.810 -5.605 4.750 2.082 1.000 -3.140 C6 URR 10 URR C7 C11 C 0 1 N N N N N N -19.559 -5.663 3.542 1.859 0.248 0.541 C7 URR 11 URR C8 C12 C 0 1 N N S N N N -17.491 -5.650 4.901 4.131 -0.413 1.124 C8 URR 12 URR C14 C13 C 0 1 N N S N N N -17.252 -6.500 6.145 4.577 0.827 1.902 C14 URR 13 URR C9 C14 C 0 1 N N N N N N -16.770 -4.305 4.987 5.335 -1.024 0.404 C9 URR 14 URR C15 C15 C 0 1 N N N N N N -21.544 -2.650 -0.235 -3.960 -0.274 -0.811 C15 URR 15 URR C16 C16 C 0 1 N N N N N N -22.225 -2.744 -1.602 -5.254 -0.167 -0.002 C16 URR 16 URR O3 O1 O 0 1 N N N N N N -15.879 -6.822 6.289 5.649 0.478 2.780 O3 URR 17 URR O1 O2 O 0 1 N N N N N N -20.769 -3.014 2.346 -1.492 -0.268 -1.703 O1 URR 18 URR N1 N1 N 0 1 N N N N N N -21.642 -5.104 2.299 -0.530 0.447 0.166 N1 URR 19 URR N2 N2 N 0 1 N N N N N N -18.924 -5.439 4.698 3.115 -0.032 0.140 N2 URR 20 URR N3 N3 N 0 1 N N N N N N -15.186 -2.031 2.762 6.170 -4.277 -0.709 N3 URR 21 URR O2 O3 O 0 1 N N N N N N -16.243 -1.385 4.686 6.850 -2.359 -1.712 O2 URR 22 URR O4 O4 O 0 1 N N N N N N -18.977 -5.976 2.503 1.595 0.286 1.724 O4 URR 23 URR O5 O5 O 0 1 N N N N N N -21.960 -3.780 0.576 -2.836 0.126 0.018 O5 URR 24 URR S2 S1 S 0 1 N Y N N N N -17.841 -5.647 7.643 5.138 2.101 0.739 S2 URR 25 URR H1 H1 H 0 1 N N N N N N -14.096 -3.406 1.577 5.498 -5.352 0.976 H1 URR 26 URR H3 H3 H 0 1 N N N N N N -16.411 -4.905 1.951 3.483 -3.445 0.981 H3 URR 27 URR H5 H5 H 0 1 N N N N N N -24.914 -8.064 4.610 2.682 3.990 -1.534 H5 URR 28 URR H8 H8 H 0 1 N N N N N N -17.670 -3.454 3.236 4.084 -2.194 -0.925 H8 URR 29 URR H17 H17 H 0 1 N N N N N N -17.854 -7.418 6.069 3.740 1.211 2.485 H17 URR 30 URR H18 H18 H 0 1 N N N N N N -15.754 -4.480 5.372 6.134 -1.206 1.123 H18 URR 31 URR H19 H19 H 0 1 N N N N N N -17.321 -3.660 5.687 5.687 -0.335 -0.364 H19 URR 32 URR H20 H20 H 0 1 N N N N N N -20.452 -2.670 -0.364 -3.820 -1.304 -1.139 H20 URR 33 URR H21 H21 H 0 1 N N N N N N -21.837 -1.712 0.260 -4.020 0.380 -1.681 H21 URR 34 URR H25 H25 H 0 1 N N N N N N -15.757 -7.350 7.069 6.429 0.128 2.329 H25 URR 35 URR H26 H26 H 0 1 N N N N N N -22.214 -5.745 1.787 -0.619 0.663 1.107 H26 URR 36 URR H27 H27 H 0 1 N N N N N N -19.463 -5.106 5.472 3.346 0.018 -0.801 H27 URR 37 URR H28 H28 H 0 1 N N N N N N -14.642 -1.200 2.642 6.847 -4.871 -1.068 H28 URR 38 URR O9 O6 O 0 1 N Y N N N N -17.178 -6.623 8.999 5.668 3.218 1.626 O9 URR 39 URR O7 O7 O 0 1 N Y N N N N ? ? ? 6.279 1.652 0.021 O7 URR 40 URR O8 O8 O 0 1 N Y N N N N ? ? ? 4.031 2.684 0.066 O8 URR 41 URR H29 H29 H 0 1 N Y N N N N -17.444 -6.239 9.826 6.008 3.980 1.138 H29 URR 42 URR C17 C17 C 0 1 N N N N N N ? ? ? -5.169 -1.084 1.220 C17 URR 43 URR C18 C18 C 0 1 N N N N N N ? ? ? -5.449 1.279 0.459 C18 URR 44 URR S1 S2 S 0 1 N N N N N N ? ? ? -6.657 -0.667 -1.037 S1 URR 45 URR C19 C19 C 0 1 Y N N N N N ? ? ? -8.035 -0.482 0.047 C19 URR 46 URR C20 C20 C 0 1 Y N N N N N ? ? ? -8.709 0.723 0.107 C20 URR 47 URR C21 C21 C 0 1 Y N N N N N ? ? ? -9.790 0.869 0.957 C21 URR 48 URR C22 C22 C 0 1 Y N N N N N ? ? ? -10.196 -0.191 1.746 C22 URR 49 URR C23 C23 C 0 1 Y N N N N N ? ? ? -9.522 -1.396 1.685 C23 URR 50 URR C24 C24 C 0 1 Y N N N N N ? ? ? -8.444 -1.543 0.832 C24 URR 51 URR O6 O9 O 0 1 N N N N N N ? ? ? -6.893 0.325 -2.026 O6 URR 52 URR H4 H4 H 0 1 N N N N N N -15.696 -2.931 0.914 4.308 -5.201 -0.350 H4 URR 53 URR H6 H6 H 0 1 N N N N N N -15.034 -4.909 3.105 5.070 -3.174 1.774 H6 URR 54 URR H7 H7 H 0 1 N N N N N N -23.466 -8.961 4.040 3.463 3.346 -2.998 H7 URR 55 URR H9 H9 H 0 1 N N N N N N -23.467 -8.196 5.665 1.718 3.698 -3.002 H9 URR 56 URR H2 H2 H 0 1 N N N N N N -21.323 -4.745 4.325 0.838 -0.238 -1.269 H2 URR 57 URR H10 H10 H 0 1 N N N N N N -21.390 -7.619 3.350 0.133 2.153 -1.717 H10 URR 58 URR H11 H11 H 0 1 N N N N N N -21.391 -7.035 5.049 1.072 2.639 -0.285 H11 URR 59 URR H12 H12 H 0 1 N N N N N N -23.593 -6.766 2.977 3.098 1.554 -1.323 H12 URR 60 URR H13 H13 H 0 1 N N N N N N -24.909 -5.634 4.732 1.292 1.396 -3.778 H13 URR 61 URR H14 H14 H 0 1 N N N N N N -23.461 -5.612 5.793 3.014 0.953 -3.703 H14 URR 62 URR H15 H15 H 0 1 N N N N N N -23.459 -4.689 4.252 1.809 -0.001 -2.805 H15 URR 63 URR H16 H16 H 0 1 N N N N N N -17.088 -6.195 4.035 3.711 -1.144 1.815 H16 URR 64 URR H22 H22 H 0 1 N N N N N N ? ? ? -4.326 -0.784 1.842 H22 URR 65 URR H23 H23 H 0 1 N N N N N N ? ? ? -6.091 -1.008 1.796 H23 URR 66 URR H24 H24 H 0 1 N N N N N N ? ? ? -5.030 -2.115 0.892 H24 URR 67 URR H30 H30 H 0 1 N N N N N N ? ? ? -5.510 1.932 -0.411 H30 URR 68 URR H31 H31 H 0 1 N N N N N N ? ? ? -6.371 1.355 1.035 H31 URR 69 URR H32 H32 H 0 1 N N N N N N ? ? ? -4.606 1.579 1.081 H32 URR 70 URR H33 H33 H 0 1 N N N N N N ? ? ? -8.392 1.551 -0.510 H33 URR 71 URR H34 H34 H 0 1 N N N N N N ? ? ? -10.316 1.810 1.004 H34 URR 72 URR H35 H35 H 0 1 N N N N N N ? ? ? -11.040 -0.077 2.410 H35 URR 73 URR H36 H36 H 0 1 N N N N N N ? ? ? -9.839 -2.224 2.302 H36 URR 74 URR H37 H37 H 0 1 N N N N N N ? ? ? -7.917 -2.485 0.784 H37 URR 75 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal URR C16 C15 SING N N 1 URR C15 O5 SING N N 2 URR O5 C1 SING N N 3 URR C1 N1 SING N N 4 URR C1 O1 DOUB N N 5 URR C12 C13 SING N N 6 URR C12 N3 SING N N 7 URR N1 C2 SING N N 8 URR O4 C7 DOUB N N 9 URR C13 C10 SING N N 10 URR N3 C11 SING N N 11 URR C7 C2 SING N N 12 URR C7 N2 SING N N 13 URR C2 C3 SING N N 14 URR C10 C11 SING N N 15 URR C10 C9 SING N N 16 URR C11 O2 DOUB N N 17 URR C4 C3 SING N N 18 URR C4 C5 SING N N 19 URR C4 C6 SING N N 20 URR N2 C8 SING N N 21 URR C8 C9 SING N N 22 URR C8 C14 SING N N 23 URR C14 O3 SING N N 24 URR C14 S2 SING N N 25 URR C12 H1 SING N N 26 URR C13 H3 SING N N 27 URR C5 H5 SING N N 28 URR C10 H8 SING N N 29 URR C14 H17 SING N N 30 URR C9 H18 SING N N 31 URR C9 H19 SING N N 32 URR C15 H20 SING N N 33 URR C15 H21 SING N N 34 URR O3 H25 SING N N 35 URR N1 H26 SING N N 36 URR N2 H27 SING N N 37 URR N3 H28 SING N N 38 URR S2 O9 SING N N 39 URR S2 O7 DOUB N N 40 URR S2 O8 DOUB N N 41 URR O9 H29 SING N N 42 URR C16 C17 SING N N 43 URR C16 C18 SING N N 44 URR C16 S1 SING N N 45 URR S1 C19 SING N N 46 URR C19 C20 SING Y N 47 URR C20 C21 DOUB Y N 48 URR C21 C22 SING Y N 49 URR C22 C23 DOUB Y N 50 URR C23 C24 SING Y N 51 URR C24 C19 DOUB Y N 52 URR S1 O6 DOUB N N 53 URR C12 H4 SING N N 54 URR C13 H6 SING N N 55 URR C5 H7 SING N N 56 URR C5 H9 SING N N 57 URR C2 H2 SING N N 58 URR C3 H10 SING N N 59 URR C3 H11 SING N N 60 URR C4 H12 SING N N 61 URR C6 H13 SING N N 62 URR C6 H14 SING N N 63 URR C6 H15 SING N N 64 URR C8 H16 SING N N 65 URR C17 H22 SING N N 66 URR C17 H23 SING N N 67 URR C17 H24 SING N N 68 URR C18 H30 SING N N 69 URR C18 H31 SING N N 70 URR C18 H32 SING N N 71 URR C20 H33 SING N N 72 URR C21 H34 SING N N 73 URR C22 H35 SING N N 74 URR C23 H36 SING N N 75 URR C24 H37 SING N N 76 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor URR SMILES ACDLabs 12.01 "CC(C)CC(NC(=O)OCC(C)(C)S(=O)c1ccccc1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O" URR InChI InChI 1.06 "InChI=1S/C24H37N3O9S2/c1-15(2)12-18(27-23(31)36-14-24(3,4)37(32)17-8-6-5-7-9-17)21(29)26-19(22(30)38(33,34)35)13-16-10-11-25-20(16)28/h5-9,15-16,18-19,22,30H,10-14H2,1-4H3,(H,25,28)(H,26,29)(H,27,31)(H,33,34,35)/t16-,18-,19-,22-,37?/m0/s1" URR InChIKey InChI 1.06 SNFBJKJTJOFDKW-JGGWQLOYSA-N URR SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OCC(C)(C)[S](=O)c1ccccc1)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@@H](O)[S](O)(=O)=O" URR SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OCC(C)(C)[S](=O)c1ccccc1)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O" URR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@@H](O)S(=O)(=O)O)NC(=O)OCC(C)(C)S(=O)c2ccccc2" URR SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC(C)(C)S(=O)c2ccccc2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier URR "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,2S)-2-[(N-{[2-(benzenesulfinyl)-2-methylpropoxy]carbonyl}-L-leucyl)amino]-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" URR "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{S},2~{S})-2-[[(2~{S})-4-methyl-2-[[2-methyl-2-(phenylsulfinyl)propoxy]carbonylamino]pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site URR "Create component" 2022-08-23 RCSB URR "Modify descriptor" 2022-08-24 RCSB URR "Initial release" 2022-09-07 RCSB URR "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id URR _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C14 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #