data_USE # _chem_comp.id USE _chem_comp.name Orientin _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H20 O11" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2-[3,4-bis(oxidanyl)phenyl]-8-[(2~{S},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]-5,7-bis(oxidanyl)chromen-4-one; 5281675; 2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-8-[(2S,3R,4R,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]chromen-4-one" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-12 _chem_comp.pdbx_modified_date 2021-07-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 448.377 _chem_comp.one_letter_code ? _chem_comp.three_letter_code USE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7NUH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal USE C4 C1 C 0 1 Y N N 25.890 15.746 5.181 3.773 2.559 0.153 C4 USE 1 USE C5 C2 C 0 1 Y N N 26.991 15.039 5.616 2.859 1.524 0.118 C5 USE 2 USE C6 C3 C 0 1 Y N N 27.675 15.435 6.767 3.308 0.200 0.117 C6 USE 3 USE C7 C4 C 0 1 N N N 28.820 14.666 7.259 2.336 -0.910 0.080 C7 USE 4 USE C8 C5 C 0 1 N N N 29.054 13.383 6.946 2.803 -2.188 0.085 C8 USE 5 USE C10 C6 C 0 1 Y N N 30.986 13.405 8.440 0.451 -2.933 0.008 C10 USE 6 USE C13 C7 C 0 1 Y N N 32.542 14.867 10.244 -2.231 -2.241 -0.058 C13 USE 7 USE C15 C8 C 0 1 Y N N 32.116 12.823 9.069 -0.526 -3.935 -0.030 C15 USE 8 USE C17 C9 C 0 1 N N R 31.324 17.886 8.851 -2.147 0.607 -1.422 C17 USE 9 USE C20 C10 C 0 1 N N R 29.490 18.271 11.045 -3.215 1.741 1.007 C20 USE 10 USE C21 C11 C 0 1 N N N 28.138 18.175 11.707 -4.340 1.823 2.041 C21 USE 11 USE C1 C12 C 0 1 Y N N 27.204 16.528 7.488 4.678 -0.070 0.151 C1 USE 12 USE C2 C13 C 0 1 Y N N 26.086 17.225 7.067 5.584 0.968 0.186 C2 USE 13 USE C3 C14 C 0 1 Y N N 25.434 16.838 5.918 5.139 2.282 0.187 C3 USE 14 USE C9 C15 C 0 1 N N N 30.160 12.658 7.494 1.885 -3.265 0.049 C9 USE 15 USE O1 O1 O 0 1 N N N 30.385 11.476 7.174 2.268 -4.424 0.052 O1 USE 16 USE C11 C16 C 0 1 Y N N 30.666 14.732 8.743 0.076 -1.578 0.012 C11 USE 17 USE O2 O2 O 0 1 N N N 29.580 15.333 8.165 1.026 -0.620 0.047 O2 USE 18 USE C12 C17 C 0 1 Y N N 31.448 15.457 9.645 -1.269 -1.244 -0.022 C12 USE 19 USE C14 C18 C 0 1 Y N N 32.885 13.543 9.958 -1.862 -3.582 -0.062 C14 USE 20 USE O3 O3 O 0 1 N N N 32.457 11.545 8.803 -0.165 -5.243 -0.034 O3 USE 21 USE O4 O4 O 0 1 N N N 33.298 15.582 11.120 -3.546 -1.905 -0.090 O4 USE 22 USE C16 C19 C 0 1 N N S 31.124 16.894 9.998 -1.685 0.205 -0.018 C16 USE 23 USE C18 C20 C 0 1 N N R 30.913 19.294 9.276 -2.624 2.062 -1.396 C18 USE 24 USE C19 C21 C 0 1 N N S 29.535 19.290 9.918 -3.738 2.204 -0.355 C19 USE 25 USE O5 O5 O 0 1 N N N 29.791 16.970 10.515 -2.758 0.390 0.906 O5 USE 26 USE O6 O6 O 0 1 N N N 28.229 17.448 12.926 -3.823 1.502 3.334 O6 USE 27 USE O7 O7 O 0 1 N N N 29.237 20.579 10.447 -4.141 3.572 -0.271 O7 USE 28 USE O8 O8 O 0 1 N N N 30.927 20.167 8.148 -3.125 2.423 -2.685 O8 USE 29 USE O9 O9 O 0 1 N N N 32.698 17.871 8.451 -1.058 0.477 -2.338 O9 USE 30 USE O10 O10 O 0 1 N N N 25.216 15.396 4.046 3.341 3.848 0.149 O10 USE 31 USE O11 O11 O 0 1 N N N 24.333 17.500 5.484 6.036 3.302 0.221 O11 USE 32 USE H1 H1 H 0 1 N N N 27.326 14.174 5.063 1.801 1.737 0.093 H1 USE 33 USE H2 H2 H 0 1 N N N 28.388 12.882 6.260 3.865 -2.379 0.116 H2 USE 34 USE H3 H3 H 0 1 N N N 30.688 17.577 8.009 -2.966 -0.041 -1.734 H3 USE 35 USE H4 H4 H 0 1 N N N 30.238 18.548 11.802 -2.389 2.382 1.317 H4 USE 36 USE H5 H5 H 0 1 N N N 27.765 19.188 11.917 -4.748 2.834 2.054 H5 USE 37 USE H6 H6 H 0 1 N N N 27.440 17.661 11.030 -5.127 1.116 1.779 H6 USE 38 USE H7 H7 H 0 1 N N N 27.717 16.836 8.387 5.028 -1.092 0.151 H7 USE 39 USE H8 H8 H 0 1 N N N 25.726 18.069 7.637 6.644 0.758 0.212 H8 USE 40 USE H9 H9 H 0 1 N N N 33.744 13.088 10.429 -2.622 -4.349 -0.091 H9 USE 41 USE H10 H10 H 0 1 N N N 31.844 11.177 8.177 -0.084 -5.631 0.848 H10 USE 42 USE H11 H11 H 0 1 N N N 34.008 15.039 11.443 -3.903 -1.798 -0.983 H11 USE 43 USE H12 H12 H 0 1 N N N 31.816 17.191 10.799 -0.839 0.825 0.277 H12 USE 44 USE H13 H13 H 0 1 N N N 31.638 19.650 10.023 -1.792 2.714 -1.132 H13 USE 45 USE H14 H14 H 0 1 N N N 28.790 19.011 9.158 -4.590 1.590 -0.647 H14 USE 46 USE H15 H15 H 0 1 N N N 27.370 17.397 13.330 -4.482 1.534 4.040 H15 USE 47 USE H16 H16 H 0 1 N N N 28.375 20.567 10.846 -4.480 3.934 -1.101 H16 USE 48 USE H17 H17 H 0 1 N N N 30.670 21.040 8.420 -3.446 3.333 -2.741 H17 USE 49 USE H18 H18 H 0 1 N N N 32.942 16.991 8.189 -1.278 0.720 -3.248 H18 USE 50 USE H19 H19 H 0 1 N N N 24.492 15.996 3.909 3.188 4.215 1.030 H19 USE 51 USE H20 H20 H 0 1 N N N 24.138 18.215 6.078 6.273 3.588 1.113 H20 USE 52 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal USE O10 C4 SING N N 1 USE C4 C5 DOUB Y N 2 USE C4 C3 SING Y N 3 USE O11 C3 SING N N 4 USE C5 C6 SING Y N 5 USE C3 C2 DOUB Y N 6 USE C6 C7 SING N N 7 USE C6 C1 DOUB Y N 8 USE C8 C7 DOUB N N 9 USE C8 C9 SING N N 10 USE C2 C1 SING Y N 11 USE O1 C9 DOUB N N 12 USE C7 O2 SING N N 13 USE C9 C10 SING N N 14 USE O8 C18 SING N N 15 USE O2 C11 SING N N 16 USE C10 C11 DOUB Y N 17 USE C10 C15 SING Y N 18 USE O9 C17 SING N N 19 USE C11 C12 SING Y N 20 USE O3 C15 SING N N 21 USE C17 C18 SING N N 22 USE C17 C16 SING N N 23 USE C15 C14 DOUB Y N 24 USE C18 C19 SING N N 25 USE C12 C16 SING N N 26 USE C12 C13 DOUB Y N 27 USE C19 O7 SING N N 28 USE C19 C20 SING N N 29 USE C14 C13 SING Y N 30 USE C16 O5 SING N N 31 USE C13 O4 SING N N 32 USE O5 C20 SING N N 33 USE C20 C21 SING N N 34 USE C21 O6 SING N N 35 USE C5 H1 SING N N 36 USE C8 H2 SING N N 37 USE C17 H3 SING N N 38 USE C20 H4 SING N N 39 USE C21 H5 SING N N 40 USE C21 H6 SING N N 41 USE C1 H7 SING N N 42 USE C2 H8 SING N N 43 USE C14 H9 SING N N 44 USE O3 H10 SING N N 45 USE O4 H11 SING N N 46 USE C16 H12 SING N N 47 USE C18 H13 SING N N 48 USE C19 H14 SING N N 49 USE O6 H15 SING N N 50 USE O7 H16 SING N N 51 USE O8 H17 SING N N 52 USE O9 H18 SING N N 53 USE O10 H19 SING N N 54 USE O11 H20 SING N N 55 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor USE InChI InChI 1.03 "InChI=1S/C21H20O11/c22-6-14-17(28)18(29)19(30)21(32-14)16-11(26)4-10(25)15-12(27)5-13(31-20(15)16)7-1-2-8(23)9(24)3-7/h1-5,14,17-19,21-26,28-30H,6H2/t14-,17-,18+,19-,21+/m1/s1" USE InChIKey InChI 1.03 PLAPMLGJVGLZOV-VPRICQMDSA-N USE SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@H]([C@H](O)[C@@H](O)[C@@H]1O)c2c(O)cc(O)c3C(=O)C=C(Oc23)c4ccc(O)c(O)c4" USE SMILES CACTVS 3.385 "OC[CH]1O[CH]([CH](O)[CH](O)[CH]1O)c2c(O)cc(O)c3C(=O)C=C(Oc23)c4ccc(O)c(O)c4" USE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1C2=CC(=O)c3c(cc(c(c3O2)[C@H]4[C@@H]([C@H]([C@@H]([C@H](O4)CO)O)O)O)O)O)O)O" USE SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1C2=CC(=O)c3c(cc(c(c3O2)C4C(C(C(C(O4)CO)O)O)O)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id USE _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[3,4-bis(oxidanyl)phenyl]-8-[(2~{S},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]-5,7-bis(oxidanyl)chromen-4-one" # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 USE "2-[3,4-bis(oxidanyl)phenyl]-8-[(2~{S},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]-5,7-bis(oxidanyl)chromen-4-one" PDB ? 2 USE 5281675 PUBCHEM ? 3 USE "2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-8-[(2S,3R,4R,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]chromen-4-one" PUBCHEM ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site USE "Create component" 2021-03-12 PDBE USE "Other modification" 2021-04-02 PDBE USE "Initial release" 2021-07-28 RCSB ##