data_USN # _chem_comp.id USN _chem_comp.name "Dimethylated-F430 cofactor" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C44 H55 N6 Ni O13" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-14 _chem_comp.pdbx_modified_date 2021-07-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 934.633 _chem_comp.one_letter_code ? _chem_comp.three_letter_code USN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 7B1S _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal USN NI NI1 NI 1 0 N N N -3.058 -1.547 59.138 ? ? ? NI USN 1 USN NB N1 N 0 1 N N N -1.031 -1.793 59.599 ? ? ? NB USN 2 USN ND N2 N 0 1 N N N -5.104 -1.711 59.162 ? ? ? ND USN 3 USN C1 C1 C 0 1 N N N -9.456 1.366 60.918 ? ? ? C1 USN 4 USN C1A C2 C 0 1 N N N -3.878 -3.761 57.239 ? ? ? C1A USN 5 USN C1B C3 C 0 1 N N S -0.079 -2.780 59.017 ? ? ? C1B USN 6 USN C1C C4 C 0 1 N N N -2.380 0.202 61.492 ? ? ? C1C USN 7 USN C1D C5 C 0 1 N N N -6.016 -1.033 59.818 ? ? ? C1D USN 8 USN C2 C6 C 0 1 N N N -7.575 -2.662 60.931 ? ? ? C2 USN 9 USN C2A C7 C 0 1 N N S -3.735 -5.177 56.785 ? ? ? C2A USN 10 USN C2B C8 C 0 1 N N S 1.206 -2.742 59.883 ? ? ? C2B USN 11 USN C2C C9 C 0 1 N N R -2.764 1.388 62.337 ? ? ? C2C USN 12 USN C2D C10 C 0 1 N N S -7.389 -1.695 59.744 ? ? ? C2D USN 13 USN C3A C11 C 0 1 N N S -2.461 -5.584 57.494 ? ? ? C3A USN 14 USN C3B C12 C 0 1 N N R 0.687 -2.139 61.208 ? ? ? C3B USN 15 USN C3C C13 C 0 1 N N S -4.256 1.358 62.271 ? ? ? C3C USN 16 USN C3D C14 C 0 1 N N S -7.244 -2.471 58.419 ? ? ? C3D USN 17 USN C4A C15 C 0 1 N N S -1.736 -4.213 57.727 ? ? ? C4A USN 18 USN C4B C16 C 0 1 N N N -0.553 -1.374 60.738 ? ? ? C4B USN 19 USN C4C C17 C 0 1 N N N -4.502 0.463 61.077 ? ? ? C4C USN 20 USN C4D C18 C 0 1 N N S -5.771 -2.833 58.452 ? ? ? C4D USN 21 USN C5A C19 C 0 1 N N N -3.585 -5.208 55.247 ? ? ? C5A USN 22 USN C5C C20 C 0 1 N N N -2.158 2.708 61.779 ? ? ? C5C USN 23 USN C5D C21 C 0 1 N N N -8.457 -0.640 59.746 ? ? ? C5D USN 24 USN C6A C22 C 0 1 N N N -3.235 -6.575 54.651 ? ? ? C6A USN 25 USN C6B C23 C 0 1 N N N 1.739 -1.938 57.713 ? ? ? C6B USN 26 USN C6C C24 C 0 1 N N N -2.514 3.837 62.736 ? ? ? C6C USN 27 USN C6D C25 C 0 1 N N S -8.303 0.316 60.934 ? ? ? C6D USN 28 USN C7D C26 C 0 1 N N N -6.929 0.950 60.976 ? ? ? C7D USN 29 USN C8B C27 C 0 1 N N N 2.162 -1.840 59.151 ? ? ? C8B USN 30 USN C8C C28 C 0 1 N N N -4.936 0.788 63.560 ? ? ? C8C USN 31 USN C9A C29 C 0 1 N N N -5.017 -5.961 57.185 ? ? ? C9A USN 32 USN C9B C30 C 0 1 N N N 1.902 -4.113 60.066 ? ? ? C9B USN 33 USN C9C C31 C 0 1 N N N -4.763 1.740 64.741 ? ? ? C9C USN 34 USN C9D C32 C 0 1 N N N -8.133 -3.689 58.224 ? ? ? C9D USN 35 USN CAA C33 C 0 1 N N N -2.576 -6.430 58.783 ? ? ? CAA USN 36 USN CAB C34 C 0 1 N N N 0.335 -3.136 62.335 ? ? ? CAB USN 37 USN CAC C35 C 0 1 N N N -5.225 1.054 66.000 ? ? ? CAC USN 38 USN CAD C36 C 0 1 N N N -9.575 -3.344 58.015 ? ? ? CAD USN 39 USN CBA C37 C 0 1 N N N -2.790 -7.919 58.474 ? ? ? CBA USN 40 USN CBB C38 C 0 1 N N N -0.125 -2.467 63.633 ? ? ? CBB USN 41 USN CCA C39 C 0 1 N N N -2.574 -8.686 59.756 ? ? ? CCA USN 42 USN CCB C40 C 0 1 N N N -0.415 -3.444 64.739 ? ? ? CCB USN 43 USN CHA C41 C 0 1 N N N -5.128 -2.977 57.061 ? ? ? CHA USN 44 USN CHB C42 C 0 1 N N N -0.758 -4.154 58.904 ? ? ? CHB USN 45 USN CHC C43 C 0 1 N N N -1.148 -0.344 61.559 ? ? ? CHC USN 46 USN CHD C44 C 0 1 N N N -5.777 0.091 60.629 ? ? ? CHD USN 47 USN N5B N3 N 0 1 N N N 0.454 -2.359 57.690 ? ? ? N5B USN 48 USN N8A N4 N 0 1 N N N -2.658 -6.587 53.441 ? ? ? N8A USN 49 USN NA N5 N 0 1 N N N -2.896 -3.265 57.868 ? ? ? NA USN 50 USN NC N6 N 0 1 N N R -3.356 -0.193 60.666 ? ? ? NC USN 51 USN O7A O1 O 0 1 N N N -3.525 -7.624 55.252 ? ? ? O7A USN 52 USN O7B O2 O 0 1 N N N 2.404 -1.647 56.734 ? ? ? O7B USN 53 USN O7C O3 O 0 1 N N N -2.016 3.726 63.892 ? ? ? O7C USN 54 USN O8C O4 O 0 1 N N N -3.216 4.801 62.363 ? ? ? O8C USN 55 USN O8D O5 O 0 1 N N N -6.820 2.105 61.386 ? ? ? O8D USN 56 USN OBC O6 O 0 1 N N N -5.810 1.791 66.852 ? ? ? OBC USN 57 USN OBD O7 O 0 1 N N N -10.396 -4.271 58.323 ? ? ? OBD USN 58 USN OCC O8 O 0 1 N N N -4.931 -0.111 66.219 ? ? ? OCC USN 59 USN OCD O9 O 0 1 N N N -9.914 -2.248 57.575 ? ? ? OCD USN 60 USN ODA O10 O 0 1 N N N -3.190 -8.322 60.768 ? ? ? ODA USN 61 USN ODB O11 O 0 1 N N N -1.307 -3.148 65.592 ? ? ? ODB USN 62 USN OEA O12 O 0 1 N N N -1.733 -9.644 59.775 ? ? ? OEA USN 63 USN OEB O13 O 0 1 N N N 0.309 -4.450 64.799 ? ? ? OEB USN 64 USN H1 H1 H 0 1 N N N -9.342 2.050 61.772 ? ? ? H1 USN 65 USN H2 H2 H 0 1 N N N -9.416 1.940 59.981 ? ? ? H2 USN 66 USN H3 H3 H 0 1 N N N -10.424 0.849 60.990 ? ? ? H3 USN 67 USN H5 H5 H 0 1 N N N -7.676 -2.085 61.862 ? ? ? H5 USN 68 USN H7 H7 H 0 1 N N N -2.789 -4.502 54.969 ? ? ? H7 USN 69 USN H8 H8 H 0 1 N N N -4.537 -4.879 54.806 ? ? ? H8 USN 70 USN H9 H9 H 0 1 N N N -1.065 2.614 61.705 ? ? ? H9 USN 71 USN H10 H10 H 0 1 N N N -2.576 2.918 60.783 ? ? ? H10 USN 72 USN H12 H12 H 0 1 N N N -8.390 -0.063 58.812 ? ? ? H12 USN 73 USN H13 H13 H 0 1 N N N -8.422 -0.279 61.851 ? ? ? H13 USN 74 USN H14 H14 H 0 1 N N N 3.198 -2.187 59.277 ? ? ? H14 USN 75 USN H15 H15 H 0 1 N N N 2.075 -0.805 59.513 ? ? ? H15 USN 76 USN H16 H16 H 0 1 N N N -6.010 0.647 63.367 ? ? ? H16 USN 77 USN H17 H17 H 0 1 N N N -4.478 -0.180 63.809 ? ? ? H17 USN 78 USN H18 H18 H 0 1 N N N -5.132 -5.944 58.279 ? ? ? H18 USN 79 USN H19 H19 H 0 1 N N N -5.895 -5.491 56.717 ? ? ? H19 USN 80 USN H20 H20 H 0 1 N N N -4.932 -7.003 56.842 ? ? ? H20 USN 81 USN H21 H21 H 0 1 N N N 2.799 -3.989 60.691 ? ? ? H21 USN 82 USN H22 H22 H 0 1 N N N 1.209 -4.814 60.555 ? ? ? H22 USN 83 USN H23 H23 H 0 1 N N N 2.192 -4.511 59.082 ? ? ? H23 USN 84 USN H24 H24 H 0 1 N N N -3.703 2.015 64.840 ? ? ? H24 USN 85 USN H25 H25 H 0 1 N N N -5.363 2.647 64.574 ? ? ? H25 USN 86 USN H26 H26 H 0 1 N N N -8.053 -4.326 59.117 ? ? ? H26 USN 87 USN H27 H27 H 0 1 N N N -7.776 -4.244 57.344 ? ? ? H27 USN 88 USN H28 H28 H 0 1 N N N -1.650 -6.317 59.366 ? ? ? H28 USN 89 USN H29 H29 H 0 1 N N N -3.428 -6.063 59.374 ? ? ? H29 USN 90 USN H30 H30 H 0 1 N N N -0.473 -3.791 61.978 ? ? ? H30 USN 91 USN H32 H32 H 0 1 N N N -3.814 -8.083 58.107 ? ? ? H32 USN 92 USN H33 H33 H 0 1 N N N -2.070 -8.251 57.712 ? ? ? H33 USN 93 USN H34 H34 H 0 1 N N N 0.666 -1.782 63.972 ? ? ? H34 USN 94 USN H36 H36 H 0 1 N N N -4.896 -1.984 56.648 ? ? ? H36 USN 95 USN H37 H37 H 0 1 N N N -1.309 -4.356 59.834 ? ? ? H37 USN 96 USN H38 H38 H 0 1 N N N -0.513 0.046 62.341 ? ? ? H38 USN 97 USN H39 H39 H 0 1 N N N -0.093 -2.386 56.853 ? ? ? H39 USN 98 USN H40 H40 H 0 1 N N N -2.448 -7.457 52.996 ? ? ? H40 USN 99 USN H41 H41 H 0 1 N N N -2.437 -5.725 52.984 ? ? ? H41 USN 100 USN H42 H42 H 0 1 N N N -2.259 4.480 64.416 ? ? ? H42 USN 101 USN H43 H43 H 0 1 N N N -5.967 1.294 67.646 ? ? ? H43 USN 102 USN H44 H44 H 0 1 N N N -11.284 -3.976 58.158 ? ? ? H44 USN 103 USN H45 H45 H 0 1 N N N -2.931 -8.859 61.507 ? ? ? H45 USN 104 USN H46 H46 H 0 1 N N N -1.329 -3.812 66.272 ? ? ? H46 USN 105 USN H4 H4 H 0 1 N N N -8.481 -3.265 60.774 ? ? ? H4 USN 106 USN H6 H6 H 0 1 N N N -6.701 -3.326 61.004 ? ? ? H6 USN 107 USN H11 H11 H 0 1 N N N -2.425 1.239 63.373 ? ? ? H11 USN 108 USN H31 H31 H 0 1 N N N -1.849 -6.156 56.781 ? ? ? H31 USN 109 USN H35 H35 H 0 1 N N N 1.429 -1.421 61.587 ? ? ? H35 USN 110 USN H47 H47 H 0 1 N N N -4.647 2.366 62.071 ? ? ? H47 USN 111 USN H48 H48 H 0 1 N N N -7.417 -1.772 57.587 ? ? ? H48 USN 112 USN H49 H49 H 0 1 N N N -1.186 -3.962 56.808 ? ? ? H49 USN 113 USN H50 H50 H 0 1 N N N -5.634 -3.769 59.014 ? ? ? H50 USN 114 USN H51 H51 H 0 1 N N N -9.441 -1.128 59.806 ? ? ? H51 USN 115 USN H52 H52 H 0 1 N N N 1.228 -3.740 62.554 ? ? ? H52 USN 116 USN H53 H53 H 0 1 N N N -1.041 -1.895 63.425 ? ? ? H53 USN 117 USN H54 H54 H 0 1 N N N -5.812 -3.506 56.382 ? ? ? H54 USN 118 USN H55 H55 H 0 1 N N N 0.016 -4.923 58.762 ? ? ? H55 USN 119 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal USN N8A C6A SING N N 1 USN C6A C5A SING N N 2 USN C6A O7A DOUB N N 3 USN C5A C2A SING N N 4 USN O7B C6B DOUB N N 5 USN C2A C9A SING N N 6 USN C2A C1A SING N N 7 USN C2A C3A SING N N 8 USN CHA C1A SING N N 9 USN CHA C4D SING N N 10 USN C1A NA DOUB N N 11 USN C3A C4A SING N N 12 USN C3A CAA SING N N 13 USN OCD CAD DOUB N N 14 USN N5B C6B SING N N 15 USN N5B C1B SING N N 16 USN C6B C8B SING N N 17 USN C4A NA SING N N 18 USN C4A CHB SING N N 19 USN NA NI SING N N 20 USN CAD C9D SING N N 21 USN CAD OBD SING N N 22 USN C9D C3D SING N N 23 USN C3D C4D SING N N 24 USN C3D C2D SING N N 25 USN C4D ND SING N N 26 USN CBA CAA SING N N 27 USN CBA CCA SING N N 28 USN CHB C1B SING N N 29 USN C1B NB SING N N 30 USN C1B C2B SING N N 31 USN NI ND SING N N 32 USN NI NB SING N N 33 USN NI NC SING N N 34 USN C8B C2B SING N N 35 USN ND C1D DOUB N N 36 USN NB C4B DOUB N N 37 USN C2D C5D SING N N 38 USN C2D C1D SING N N 39 USN C2D C2 SING N N 40 USN C5D C6D SING N N 41 USN CCA OEA DOUB N N 42 USN CCA ODA SING N N 43 USN C1D CHD SING N N 44 USN C2B C9B SING N N 45 USN C2B C3B SING N N 46 USN CHD C7D SING N N 47 USN CHD C4C DOUB N N 48 USN NC C4C SING N N 49 USN NC C1C SING N N 50 USN C4B C3B SING N N 51 USN C4B CHC SING N N 52 USN C1 C6D SING N N 53 USN C6D C7D SING N N 54 USN C7D O8D DOUB N N 55 USN C4C C3C SING N N 56 USN C3B CAB SING N N 57 USN C1C CHC DOUB N N 58 USN C1C C2C SING N N 59 USN C5C C2C SING N N 60 USN C5C C6C SING N N 61 USN C3C C2C SING N N 62 USN C3C C8C SING N N 63 USN CAB CBB SING N N 64 USN O8C C6C DOUB N N 65 USN C6C O7C SING N N 66 USN C8C C9C SING N N 67 USN CBB CCB SING N N 68 USN CCB OEB DOUB N N 69 USN CCB ODB SING N N 70 USN C9C CAC SING N N 71 USN CAC OCC DOUB N N 72 USN CAC OBC SING N N 73 USN C1 H1 SING N N 74 USN C1 H2 SING N N 75 USN C1 H3 SING N N 76 USN C2 H5 SING N N 77 USN C5A H7 SING N N 78 USN C5A H8 SING N N 79 USN C5C H9 SING N N 80 USN C5C H10 SING N N 81 USN C5D H12 SING N N 82 USN C6D H13 SING N N 83 USN C8B H14 SING N N 84 USN C8B H15 SING N N 85 USN C8C H16 SING N N 86 USN C8C H17 SING N N 87 USN C9A H18 SING N N 88 USN C9A H19 SING N N 89 USN C9A H20 SING N N 90 USN C9B H21 SING N N 91 USN C9B H22 SING N N 92 USN C9B H23 SING N N 93 USN C9C H24 SING N N 94 USN C9C H25 SING N N 95 USN C9D H26 SING N N 96 USN C9D H27 SING N N 97 USN CAA H28 SING N N 98 USN CAA H29 SING N N 99 USN CAB H30 SING N N 100 USN CBA H32 SING N N 101 USN CBA H33 SING N N 102 USN CBB H34 SING N N 103 USN CHA H36 SING N N 104 USN CHB H37 SING N N 105 USN CHC H38 SING N N 106 USN N5B H39 SING N N 107 USN N8A H40 SING N N 108 USN N8A H41 SING N N 109 USN O7C H42 SING N N 110 USN OBC H43 SING N N 111 USN OBD H44 SING N N 112 USN ODA H45 SING N N 113 USN ODB H46 SING N N 114 USN C2 H4 SING N N 115 USN C2 H6 SING N N 116 USN C2C H11 SING N N 117 USN C3A H31 SING N N 118 USN C3B H35 SING N N 119 USN C3C H47 SING N N 120 USN C3D H48 SING N N 121 USN C4A H49 SING N N 122 USN C4D H50 SING N N 123 USN C5D H51 SING N N 124 USN CAB H52 SING N N 125 USN CBB H53 SING N N 126 USN CHA H54 SING N N 127 USN CHB H55 SING N N 128 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor USN InChI InChI 1.03 "InChI=1S/C44H56N6O13.Ni/c1-19-15-42(3)24(12-36(61)62)26-14-29-41(2,17-30(45)51)22(6-9-33(55)56)28(46-29)16-44-43(4,18-31(52)50-44)23(7-10-34(57)58)27(49-44)13-25-21(11-35(59)60)20(5-8-32(53)54)38(47-25)37(39(19)63)40(42)48-26;/h13,19-24,26,28H,5-12,14-18H2,1-4H3,(H9,45,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63);/q;+1/p-1/t19-,20?,21?,22?,23?,24?,26?,28?,41-,42-,43-,44-;/m0./s1" USN InChIKey InChI 1.03 RAZHPFHMRANHAI-KFKQAULWSA-M USN SMILES_CANONICAL CACTVS 3.385 "C[C@H]1C[C@@]2(C)[C@H](CC(O)=O)[C@@H]3CC4=N[C@@H](C[C@]56NC(=O)C[C@@]5(C)[C@@H](CCC(O)=O)C(=N6)C=C7[C@H](CC(O)=O)[C@H](CCC(O)=O)C(=C(C1=O)C2=N3)[N@@]7[Ni])[C@@H](CCC(O)=O)[C@]4(C)CC(N)=O" USN SMILES CACTVS 3.385 "C[CH]1C[C]2(C)[CH](CC(O)=O)[CH]3CC4=N[CH](C[C]56NC(=O)C[C]5(C)[CH](CCC(O)=O)C(=N6)C=C7[CH](CC(O)=O)[CH](CCC(O)=O)C(=C(C1=O)C2=N3)[N]7[Ni])[CH](CCC(O)=O)[C]4(C)CC(N)=O" USN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1C[C@]2(C(C3CC4=[N]5C(CC67[C@@](CC(=O)N6)(C(C8=[N]7[Ni]59[N]3=C2C(=C2N9C(=C8)C(C2CCC(=O)O)CC(=O)O)C1=O)CCC(=O)O)C)C([C@]4(C)CC(=O)N)CCC(=O)O)CC(=O)O)C" USN SMILES "OpenEye OEToolkits" 2.0.7 "CC1CC2(C(C3CC4=[N]5C(CC67C(CC(=O)N6)(C(C8=[N]7[Ni]59[N]3=C2C(=C2N9C(=C8)C(C2CCC(=O)O)CC(=O)O)C1=O)CCC(=O)O)C)C(C4(C)CC(=O)N)CCC(=O)O)CC(=O)O)C" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site USN "Create component" 2021-03-14 PDBE USN "Initial release" 2021-07-14 RCSB ##