data_USR # _chem_comp.id USR _chem_comp.name "methyl 3-O-[3,5-dideoxy-5-(2-hydroxyacetamido)-L-glycero-alpha-D-gulo-non-2-ulopyranonosyl]-beta-D-talopyranoside" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H31 N O15" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-06 _chem_comp.pdbx_modified_date 2024-05-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 501.436 _chem_comp.one_letter_code ? _chem_comp.three_letter_code USR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8ST6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal USR C01 C1 C 0 1 N N R N N N 5.947 -8.058 -10.871 1.962 -1.825 -0.027 C01 USR 1 USR C02 C2 C 0 1 N N S N N N 4.936 -6.984 -11.440 1.059 -2.783 0.752 C02 USR 2 USR C03 C3 C 0 1 N N N N N N 3.661 -7.749 -11.848 1.842 -4.050 1.102 C03 USR 3 USR C07 C4 C 0 1 N N R N N N 7.312 -7.703 -10.268 1.234 -0.496 -0.236 C07 USR 4 USR C08 C5 C 0 1 N N S N N N 7.583 -7.008 -8.906 2.115 0.444 -1.063 C08 USR 5 USR C09 C6 C 0 1 N N S N N N 8.757 -6.082 -8.951 1.405 1.793 -1.217 C09 USR 6 USR C10 C7 C 0 1 N N N N N N 9.720 -6.426 -10.023 1.097 2.358 0.173 C10 USR 7 USR C11 C8 C 0 1 N N S N N N 9.155 -6.441 -11.424 0.255 1.344 0.952 C11 USR 8 USR C13 C9 C 0 1 N N N N N N 8.821 -5.076 -11.944 -0.002 1.866 2.341 C13 USR 9 USR C16 C10 C 0 1 N N S N N N 10.293 -6.148 -14.470 -1.942 -1.082 0.233 C16 USR 10 USR C17 C11 C 0 1 N N S N N N 10.347 -7.374 -13.663 -1.884 0.263 0.965 C17 USR 11 USR C18 C12 C 0 1 N N S N N N 10.045 -8.725 -14.278 -3.287 0.877 0.991 C18 USR 12 USR C19 C13 C 0 1 N N R N N N 9.723 -8.713 -15.746 -3.801 1.018 -0.444 C19 USR 13 USR C21 C14 C 0 1 N N R N N N 9.975 -6.351 -15.957 -2.507 -0.865 -1.173 C21 USR 14 USR C25 C15 C 0 1 N N N N N N 10.631 -5.298 -16.817 -2.624 -2.212 -1.889 C25 USR 15 USR C28 C16 C 0 1 N N N N N N 5.858 -6.944 -6.970 4.491 0.983 -1.087 C28 USR 16 USR C29 C17 C 0 1 N N N N N N 4.753 -6.161 -6.240 5.809 1.185 -0.385 C29 USR 17 USR C32 C18 C 0 1 N N N N N N 9.938 -10.171 -17.579 -5.666 1.816 -1.721 C32 USR 18 USR N15 N1 N 0 1 N N N N N N 6.483 -6.306 -8.152 3.396 0.641 -0.380 N15 USR 19 USR O04 O1 O 0 1 N N N N N N 3.408 -7.672 -13.224 1.038 -4.895 1.928 O04 USR 20 USR O05 O2 O 0 1 N N N N N N 5.357 -6.238 -12.553 -0.073 -3.129 -0.049 O05 USR 21 USR O06 O3 O 0 1 N N N N N N 5.438 -8.947 -9.955 3.164 -1.598 0.711 O06 USR 22 USR O12 O4 O 0 1 N N N N N N 7.880 -7.166 -11.478 0.960 0.103 1.032 O12 USR 23 USR O14 O5 O 0 1 N N N N N N 9.427 -6.207 -7.658 0.186 1.612 -1.941 O14 USR 24 USR O20 O6 O 0 1 N N N N N N 10.498 -7.645 -16.382 -3.800 -0.263 -1.077 O20 USR 25 USR O22 O7 O 0 1 N N N N N N 10.230 -9.893 -16.209 -5.131 1.539 -0.425 O22 USR 26 USR O23 O8 O 0 1 N N N N N N 11.699 -5.996 -14.347 -2.785 -1.982 0.954 O23 USR 27 USR O24 O9 O 0 1 N N N N N N 10.144 -7.226 -12.183 -0.990 1.142 0.280 O24 USR 28 USR O26 O10 O 0 1 N N N N N N 10.343 -5.498 -18.173 -3.039 -1.999 -3.240 O26 USR 29 USR O27 O11 O 0 1 N N N N N N 9.129 -9.598 -13.551 -3.233 2.166 1.607 O27 USR 30 USR O30 O12 O 0 1 N N N N N N 6.204 -8.034 -6.640 4.416 1.128 -2.289 O30 USR 31 USR O31 O13 O 0 1 N N N N N N 4.624 -6.667 -4.933 6.810 1.539 -1.342 O31 USR 32 USR O33 O14 O 0 1 N N N N N N 9.639 -4.161 -11.742 -1.136 2.053 2.716 O33 USR 33 USR O34 O15 O 0 1 N N N N N N 7.724 -4.844 -12.571 1.027 2.124 3.163 O34 USR 34 USR H011 H1 H 0 0 N N N N N N 6.200 -8.662 -11.755 2.206 -2.262 -0.995 H011 USR 35 USR H021 H2 H 0 0 N N N N N N 4.675 -6.306 -10.614 0.721 -2.300 1.669 H021 USR 36 USR H031 H3 H 0 0 N N N N N N 3.779 -8.807 -11.569 2.103 -4.581 0.186 H031 USR 37 USR H032 H4 H 0 0 N N N N N N 2.804 -7.321 -11.307 2.752 -3.779 1.637 H032 USR 38 USR H071 H5 H 0 0 N N N N N N 7.800 -8.682 -10.151 0.297 -0.674 -0.765 H071 USR 39 USR H081 H6 H 0 0 N N N N N N 7.897 -7.827 -8.242 2.289 0.009 -2.047 H081 USR 40 USR H091 H7 H 0 0 N N N N N N 8.403 -5.050 -9.090 2.051 2.485 -1.758 H091 USR 41 USR H102 H8 H 0 0 N N N N N N 10.536 -5.689 -9.995 2.030 2.542 0.706 H102 USR 42 USR H101 H9 H 0 0 N N N N N N 10.122 -7.427 -9.809 0.543 3.291 0.072 H101 USR 43 USR H161 H10 H 0 0 N N N N N N 9.701 -5.341 -14.014 -0.938 -1.501 0.162 H161 USR 44 USR H171 H11 H 0 0 N N N N N N 11.442 -7.478 -13.641 -1.535 0.108 1.985 H171 USR 45 USR H181 H12 H 0 0 N N N N N N 11.010 -9.251 -14.229 -3.958 0.231 1.557 H181 USR 46 USR H191 H13 H 0 0 N N N N N N 8.643 -8.598 -15.919 -3.152 1.698 -0.998 H191 USR 47 USR H211 H14 H 0 0 N N N N N N 8.885 -6.316 -16.101 -1.842 -0.211 -1.736 H211 USR 48 USR H252 H15 H 0 0 N N N N N N 10.262 -4.307 -16.514 -1.656 -2.713 -1.881 H252 USR 49 USR H251 H16 H 0 0 N N N N N N 11.720 -5.344 -16.671 -3.359 -2.833 -1.377 H251 USR 50 USR H292 H17 H 0 0 N N N N N N 5.021 -5.095 -6.199 5.711 1.984 0.350 H292 USR 51 USR H291 H18 H 0 0 N N N N N N 3.800 -6.279 -6.777 6.098 0.262 0.118 H291 USR 52 USR H323 H19 H 0 0 N N N N N N 10.384 -11.136 -17.861 -5.688 0.899 -2.309 H323 USR 53 USR H322 H20 H 0 0 N N N N N N 8.848 -10.216 -17.720 -6.678 2.208 -1.621 H322 USR 54 USR H321 H21 H 0 0 N N N N N N 10.357 -9.375 -18.212 -5.039 2.554 -2.223 H321 USR 55 USR H151 H22 H 0 0 N N N N N N 6.173 -5.404 -8.451 3.456 0.525 0.581 H151 USR 56 USR H041 H23 H 0 0 N N N N N N 2.616 -8.156 -13.428 1.472 -5.719 2.189 H041 USR 57 USR H051 H24 H 0 0 N N N N N N 4.672 -5.629 -12.804 0.146 -3.641 -0.839 H051 USR 58 USR H061 H25 H 0 0 N N N N N N 6.123 -9.545 -9.679 3.023 -1.209 1.585 H061 USR 59 USR H141 H26 H 0 0 N N N N N N 10.185 -5.634 -7.637 -0.316 2.427 -2.076 H141 USR 60 USR H231 H27 H 0 0 N N N N N N 11.975 -5.215 -14.812 -2.868 -2.855 0.547 H231 USR 61 USR H261 H28 H 0 0 N N N N N N 10.767 -4.823 -18.690 -3.134 -2.812 -3.755 H261 USR 62 USR H271 H29 H 0 0 N N N N N N 9.018 -10.411 -14.030 -4.097 2.581 1.728 H271 USR 63 USR H311 H30 H 0 0 N N N N N N 5.143 -7.458 -4.847 7.686 1.684 -0.959 H311 USR 64 USR H1 H31 H 0 1 N N N N N N 7.686 -3.927 -12.815 0.812 2.457 4.045 H1 USR 65 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal USR C01 C02 SING N N 1 USR C02 C03 SING N N 2 USR C03 O04 SING N N 3 USR C02 O05 SING N N 4 USR C01 O06 SING N N 5 USR C07 C08 SING N N 6 USR C08 C09 SING N N 7 USR C10 C09 SING N N 8 USR C10 C11 SING N N 9 USR C11 O12 SING N N 10 USR O12 C07 SING N N 11 USR C11 C13 SING N N 12 USR C09 O14 SING N N 13 USR C08 N15 SING N N 14 USR C16 C17 SING N N 15 USR C17 C18 SING N N 16 USR C19 C18 SING N N 17 USR C19 O20 SING N N 18 USR O20 C21 SING N N 19 USR C21 C16 SING N N 20 USR C19 O22 SING N N 21 USR C16 O23 SING N N 22 USR C17 O24 SING N N 23 USR C01 C07 SING N N 24 USR O24 C11 SING N N 25 USR C21 C25 SING N N 26 USR C25 O26 SING N N 27 USR C18 O27 SING N N 28 USR N15 C28 SING N N 29 USR C28 C29 SING N N 30 USR C28 O30 DOUB N N 31 USR C29 O31 SING N N 32 USR O22 C32 SING N N 33 USR C13 O33 DOUB N N 34 USR C13 O34 SING N N 35 USR C01 H011 SING N N 36 USR C02 H021 SING N N 37 USR C03 H031 SING N N 38 USR C03 H032 SING N N 39 USR C07 H071 SING N N 40 USR C08 H081 SING N N 41 USR C09 H091 SING N N 42 USR C10 H102 SING N N 43 USR C10 H101 SING N N 44 USR C16 H161 SING N N 45 USR C17 H171 SING N N 46 USR C18 H181 SING N N 47 USR C19 H191 SING N N 48 USR C21 H211 SING N N 49 USR C25 H252 SING N N 50 USR C25 H251 SING N N 51 USR C29 H292 SING N N 52 USR C29 H291 SING N N 53 USR C32 H323 SING N N 54 USR C32 H322 SING N N 55 USR C32 H321 SING N N 56 USR N15 H151 SING N N 57 USR O04 H041 SING N N 58 USR O05 H051 SING N N 59 USR O06 H061 SING N N 60 USR O14 H141 SING N N 61 USR O23 H231 SING N N 62 USR O26 H261 SING N N 63 USR O27 H271 SING N N 64 USR O31 H311 SING N N 65 USR O34 H1 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor USR SMILES ACDLabs 12.01 "OCC(O)C(O)C1OC(OC2C(O)C(OC)OC(CO)C2O)(CC(O)C1NC(=O)CO)C(=O)O" USR InChI InChI 1.06 "InChI=1S/C18H31NO15/c1-31-16-13(28)15(12(27)8(4-21)32-16)34-18(17(29)30)2-6(23)10(19-9(25)5-22)14(33-18)11(26)7(24)3-20/h6-8,10-16,20-24,26-28H,2-5H2,1H3,(H,19,25)(H,29,30)/t6-,7-,8+,10+,11+,12-,13-,14+,15-,16+,18-/m0/s1" USR InChIKey InChI 1.06 UWADXVSOESDFFH-VKYAEBFESA-N USR SMILES_CANONICAL CACTVS 3.385 "CO[C@@H]1O[C@H](CO)[C@H](O)[C@H](O[C@@]2(C[C@H](O)[C@H](NC(=O)CO)[C@@H](O2)[C@H](O)[C@@H](O)CO)C(O)=O)[C@@H]1O" USR SMILES CACTVS 3.385 "CO[CH]1O[CH](CO)[CH](O)[CH](O[C]2(C[CH](O)[CH](NC(=O)CO)[CH](O2)[CH](O)[CH](O)CO)C(O)=O)[CH]1O" USR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CO[C@H]1[C@@H]([C@@H]([C@H]([C@H](O1)CO)O)O[C@@]2(C[C@@H]([C@H]([C@H](O2)[C@H]([C@H](CO)O)O)NC(=O)CO)O)C(=O)O)O" USR SMILES "OpenEye OEToolkits" 2.0.7 "COC1C(C(C(C(O1)CO)O)OC2(CC(C(C(O2)C(C(CO)O)O)NC(=O)CO)O)C(=O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier USR "SYSTEMATIC NAME" ACDLabs 12.01 "methyl 3-O-[3,5-dideoxy-5-(2-hydroxyacetamido)-L-glycero-alpha-D-gulo-non-2-ulopyranonosyl]-beta-D-talopyranoside" USR "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S},4~{S},5~{R},6~{S})-2-[(2~{R},3~{S},4~{R},5~{R},6~{R})-2-(hydroxymethyl)-6-methoxy-3,5-bis(oxidanyl)oxan-4-yl]oxy-4-oxidanyl-5-(2-oxidanylethanoylamino)-6-[(1~{S},2~{S})-1,2,3-tris(oxidanyl)propyl]oxane-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site USR "Create component" 2023-09-06 RCSB USR "Initial release" 2024-05-15 RCSB #