data_USU # _chem_comp.id USU _chem_comp.name "(5S,6S,9aS)-N-[(4-fluorophenyl)methyl]-6-methyl-8-[(naphthalen-1-yl)methyl]-4,7-dioxohexahydro-2H-pyrazino[1,2-a]pyrimidine-1(6H)-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H27 F N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-08-24 _chem_comp.pdbx_modified_date 2023-06-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 474.527 _chem_comp.one_letter_code ? _chem_comp.three_letter_code USU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8E71 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal USU C10 C1 C 0 1 Y N N -49.100 -51.433 -42.350 -2.642 1.677 -1.526 C10 USU 1 USU C13 C2 C 0 1 Y N N -46.558 -50.532 -41.439 -5.376 1.796 -2.099 C13 USU 2 USU C15 C3 C 0 1 Y N N -46.298 -48.996 -43.275 -5.875 1.863 0.299 C15 USU 3 USU C17 C4 C 0 1 Y N N -48.100 -48.859 -44.900 -4.065 1.792 1.870 C17 USU 4 USU C21 C5 C 0 1 N N N -49.328 -53.438 -49.281 -0.219 -2.959 -1.856 C21 USU 5 USU C22 C6 C 0 1 N N N -50.248 -54.580 -49.209 -0.400 -4.122 -0.874 C22 USU 6 USU C28 C7 C 0 1 N N N -45.653 -55.482 -49.344 3.920 -0.392 -1.785 C28 USU 7 USU C01 C8 C 0 1 N N N -50.877 -54.775 -44.592 0.329 -1.993 3.172 C01 USU 8 USU C02 C9 C 0 1 N N S -51.254 -53.811 -45.653 -0.882 -1.924 2.240 C02 USU 9 USU N03 N1 N 0 1 N N N -50.475 -53.881 -46.846 -0.488 -2.353 0.885 N03 USU 10 USU C04 C10 C 0 1 N N S -49.221 -53.275 -46.819 0.267 -1.393 0.077 C04 USU 11 USU C05 C11 C 0 1 N N N -49.327 -51.798 -46.594 -0.608 -0.155 -0.146 C05 USU 12 USU N06 N2 N 0 1 N N N -50.224 -51.500 -45.468 -1.217 0.275 1.106 N06 USU 13 USU C07 C12 C 0 1 N N N -50.171 -50.180 -44.850 -1.673 1.663 1.201 C07 USU 14 USU C08 C13 C 0 1 Y N N -48.833 -49.828 -44.286 -3.142 1.733 0.872 C08 USU 15 USU C09 C14 C 0 1 Y N N -48.338 -50.429 -43.068 -3.566 1.737 -0.468 C09 USU 16 USU C11 C15 C 0 1 Y N N -48.555 -51.903 -41.150 -3.089 1.683 -2.811 C11 USU 17 USU C12 C16 C 0 1 Y N N -47.304 -51.481 -40.735 -4.452 1.742 -3.097 C12 USU 18 USU C14 C17 C 0 1 Y N N -47.113 -49.974 -42.602 -4.951 1.802 -0.758 C14 USU 19 USU C16 C18 C 0 1 Y N N -46.856 -48.431 -44.451 -5.427 1.857 1.585 C16 USU 20 USU C18 C19 C 0 1 N N N -51.211 -52.365 -45.038 -1.387 -0.510 2.172 C18 USU 21 USU O19 O1 O 0 1 N N N -52.025 -52.045 -44.138 -1.977 -0.060 3.131 O19 USU 22 USU N20 N3 N 0 1 N N N -48.549 -53.596 -48.052 0.646 -1.961 -1.214 N20 USU 23 USU C23 C20 C 0 1 N N N -51.021 -54.633 -47.921 -0.824 -3.576 0.460 C23 USU 24 USU O24 O2 O 0 1 N N N -52.108 -55.168 -47.776 -1.502 -4.274 1.184 O24 USU 25 USU C25 C21 C 0 1 N N N -47.367 -54.369 -48.008 1.787 -1.570 -1.814 C25 USU 26 USU O26 O3 O 0 1 N N N -46.748 -54.548 -46.969 2.057 -1.975 -2.928 O26 USU 27 USU N27 N4 N 0 1 N N N -46.899 -54.731 -49.260 2.629 -0.730 -1.180 N27 USU 28 USU C29 C22 C 0 1 Y N N -44.467 -54.701 -49.627 4.665 0.557 -0.881 C29 USU 29 USU C30 C23 C 0 1 Y N N -44.095 -53.627 -48.824 5.512 0.061 0.092 C30 USU 30 USU C31 C24 C 0 1 Y N N -42.974 -52.879 -49.073 6.195 0.930 0.922 C31 USU 31 USU C32 C25 C 0 1 Y N N -42.193 -53.200 -50.157 6.031 2.297 0.777 C32 USU 32 USU F33 F1 F 0 1 N N N -41.110 -52.509 -50.386 6.699 3.148 1.587 F33 USU 33 USU C34 C26 C 0 1 Y N N -42.525 -54.305 -50.937 5.182 2.792 -0.198 C34 USU 34 USU C35 C27 C 0 1 Y N N -43.640 -55.031 -50.720 4.504 1.922 -1.030 C35 USU 35 USU H1 H1 H 0 1 N N N -50.044 -51.801 -42.724 -1.583 1.631 -1.320 H1 USU 36 USU H2 H2 H 0 1 N N N -45.578 -50.235 -41.097 -6.429 1.842 -2.335 H2 USU 37 USU H3 H3 H 0 1 N N N -45.323 -48.710 -42.908 -6.934 1.913 0.093 H3 USU 38 USU H4 H4 H 0 1 N N N -48.508 -48.396 -45.786 -3.737 1.789 2.899 H4 USU 39 USU H5 H5 H 0 1 N N N -48.685 -53.498 -50.172 0.249 -3.318 -2.772 H5 USU 40 USU H6 H6 H 0 1 N N N -49.875 -52.484 -49.287 -1.187 -2.514 -2.085 H6 USU 41 USU H7 H7 H 0 1 N N N -50.962 -54.508 -50.043 -1.166 -4.801 -1.251 H7 USU 42 USU H8 H8 H 0 1 N N N -49.664 -55.507 -49.305 0.542 -4.658 -0.766 H8 USU 43 USU H9 H9 H 0 1 N N N -45.763 -56.231 -50.142 4.507 -1.300 -1.921 H9 USU 44 USU H10 H10 H 0 1 N N N -45.500 -55.992 -48.381 3.755 0.082 -2.752 H10 USU 45 USU H11 H11 H 0 1 N N N -51.535 -54.638 -43.721 0.038 -1.663 4.170 H11 USU 46 USU H12 H12 H 0 1 N N N -50.983 -55.801 -44.974 0.693 -3.019 3.220 H12 USU 47 USU H13 H13 H 0 1 N N N -49.833 -54.601 -44.293 1.118 -1.344 2.791 H13 USU 48 USU H14 H14 H 0 1 N N N -52.304 -54.005 -45.917 -1.671 -2.576 2.616 H14 USU 49 USU H15 H15 H 0 1 N N N -48.638 -53.697 -45.987 1.171 -1.103 0.613 H15 USU 50 USU H16 H16 H 0 1 N N N -48.327 -51.395 -46.374 0.007 0.653 -0.542 H16 USU 51 USU H17 H17 H 0 1 N N N -49.722 -51.323 -47.504 -1.393 -0.394 -0.863 H17 USU 52 USU H18 H18 H 0 1 N N N -50.434 -49.431 -45.611 -1.510 2.031 2.214 H18 USU 53 USU H19 H19 H 0 1 N N N -50.909 -50.149 -44.035 -1.113 2.279 0.497 H19 USU 54 USU H20 H20 H 0 1 N N N -49.114 -52.600 -40.544 -2.377 1.641 -3.622 H20 USU 55 USU H21 H21 H 0 1 N N N -46.888 -51.902 -39.831 -4.781 1.737 -4.126 H21 USU 56 USU H22 H22 H 0 1 N N N -46.316 -47.671 -44.996 -6.139 1.904 2.395 H22 USU 57 USU H23 H23 H 0 1 N N N -47.404 -54.483 -50.087 2.381 -0.350 -0.323 H23 USU 58 USU H24 H24 H 0 1 N N N -44.712 -53.374 -47.974 5.640 -1.005 0.205 H24 USU 59 USU H25 H25 H 0 1 N N N -42.709 -52.053 -48.429 6.857 0.543 1.683 H25 USU 60 USU H26 H26 H 0 1 N N N -41.866 -54.590 -51.744 5.057 3.859 -0.315 H26 USU 61 USU H27 H27 H 0 1 N N N -43.896 -55.852 -51.373 3.843 2.307 -1.791 H27 USU 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal USU C34 C35 DOUB Y N 1 USU C34 C32 SING Y N 2 USU C35 C29 SING Y N 3 USU F33 C32 SING N N 4 USU C32 C31 DOUB Y N 5 USU C29 C28 SING N N 6 USU C29 C30 DOUB Y N 7 USU C28 N27 SING N N 8 USU C21 C22 SING N N 9 USU C21 N20 SING N N 10 USU N27 C25 SING N N 11 USU C22 C23 SING N N 12 USU C31 C30 SING Y N 13 USU N20 C25 SING N N 14 USU N20 C04 SING N N 15 USU C25 O26 DOUB N N 16 USU C23 O24 DOUB N N 17 USU C23 N03 SING N N 18 USU N03 C04 SING N N 19 USU N03 C02 SING N N 20 USU C04 C05 SING N N 21 USU C05 N06 SING N N 22 USU C02 C18 SING N N 23 USU C02 C01 SING N N 24 USU N06 C18 SING N N 25 USU N06 C07 SING N N 26 USU C18 O19 DOUB N N 27 USU C17 C16 DOUB Y N 28 USU C17 C08 SING Y N 29 USU C07 C08 SING N N 30 USU C16 C15 SING Y N 31 USU C08 C09 DOUB Y N 32 USU C15 C14 DOUB Y N 33 USU C09 C14 SING Y N 34 USU C09 C10 SING Y N 35 USU C14 C13 SING Y N 36 USU C10 C11 DOUB Y N 37 USU C13 C12 DOUB Y N 38 USU C11 C12 SING Y N 39 USU C10 H1 SING N N 40 USU C13 H2 SING N N 41 USU C15 H3 SING N N 42 USU C17 H4 SING N N 43 USU C21 H5 SING N N 44 USU C21 H6 SING N N 45 USU C22 H7 SING N N 46 USU C22 H8 SING N N 47 USU C28 H9 SING N N 48 USU C28 H10 SING N N 49 USU C01 H11 SING N N 50 USU C01 H12 SING N N 51 USU C01 H13 SING N N 52 USU C02 H14 SING N N 53 USU C04 H15 SING N N 54 USU C05 H16 SING N N 55 USU C05 H17 SING N N 56 USU C07 H18 SING N N 57 USU C07 H19 SING N N 58 USU C11 H20 SING N N 59 USU C12 H21 SING N N 60 USU C16 H22 SING N N 61 USU N27 H23 SING N N 62 USU C30 H24 SING N N 63 USU C31 H25 SING N N 64 USU C34 H26 SING N N 65 USU C35 H27 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor USU SMILES ACDLabs 12.01 "Fc1ccc(cc1)CNC(=O)N1CCC(=O)N2C(C)C(=O)N(CC21)Cc1cccc2ccccc21" USU InChI InChI 1.06 "InChI=1S/C27H27FN4O3/c1-18-26(34)30(16-21-7-4-6-20-5-2-3-8-23(20)21)17-24-31(14-13-25(33)32(18)24)27(35)29-15-19-9-11-22(28)12-10-19/h2-12,18,24H,13-17H2,1H3,(H,29,35)/t18-,24+/m0/s1" USU InChIKey InChI 1.06 UJSSMRPTIGCTEH-MHECFPHRSA-N USU SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1N2[C@H](CN(Cc3cccc4ccccc34)C1=O)N(CCC2=O)C(=O)NCc5ccc(F)cc5" USU SMILES CACTVS 3.385 "C[CH]1N2[CH](CN(Cc3cccc4ccccc34)C1=O)N(CCC2=O)C(=O)NCc5ccc(F)cc5" USU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1C(=O)N(C[C@H]2N1C(=O)CCN2C(=O)NCc3ccc(cc3)F)Cc4cccc5c4cccc5" USU SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(=O)N(CC2N1C(=O)CCN2C(=O)NCc3ccc(cc3)F)Cc4cccc5c4cccc5" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier USU "SYSTEMATIC NAME" ACDLabs 12.01 "(5S,6S,9aS)-N-[(4-fluorophenyl)methyl]-6-methyl-8-[(naphthalen-1-yl)methyl]-4,7-dioxohexahydro-2H-pyrazino[1,2-a]pyrimidine-1(6H)-carboxamide" USU "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(6~{S},9~{a}~{S})-~{N}-[(4-fluorophenyl)methyl]-6-methyl-8-(naphthalen-1-ylmethyl)-4,7-bis(oxidanylidene)-3,6,9,9~{a}-tetrahydro-2~{H}-pyrazino[1,2-a]pyrimidine-1-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site USU "Create component" 2022-08-24 RCSB USU "Initial release" 2023-07-05 RCSB #