data_UT7 # _chem_comp.id UT7 _chem_comp.name "oxa(dethia)-CoA" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H36 N7 O17 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]methyl (3R)-3-hydroxy-4-({3-[(2-hydroxyethyl)amino]-3-oxopropyl}amino)-2,2-dimethyl-4-oxobutyl dihydrogen diphosphate ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-06-01 _chem_comp.pdbx_modified_date 2021-05-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 751.469 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UT7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6X7R _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UT7 O1P O1 O 0 1 N N N 28.462 20.331 28.687 11.949 -5.678 -0.735 O1P UT7 1 UT7 C2P C1 C 0 1 N N N 27.678 20.886 29.709 12.912 -4.688 -1.102 C2P UT7 2 UT7 C3P C2 C 0 1 N N N 28.325 20.467 31.021 12.201 -3.509 -1.769 C3P UT7 3 UT7 N4P N1 N 0 1 N N N 28.236 19.004 31.269 11.323 -2.854 -0.796 N4P UT7 4 UT7 C5P C3 C 0 1 N N N 27.183 18.440 31.861 10.592 -1.783 -1.162 C5P UT7 5 UT7 O5P O2 O 0 1 N N N 26.108 18.959 32.170 10.660 -1.361 -2.297 O5P UT7 6 UT7 C6P C4 C 0 1 N N N 27.408 16.935 32.188 9.689 -1.109 -0.161 C6P UT7 7 UT7 C7P C5 C 0 1 N N N 26.312 16.293 33.043 8.978 0.070 -0.828 C7P UT7 8 UT7 N8P N2 N 0 1 N N N 26.542 14.893 33.438 8.100 0.725 0.145 N8P UT7 9 UT7 C9P C6 C 0 1 N N N 26.201 13.857 32.667 7.368 1.796 -0.221 C9P UT7 10 UT7 O9P O3 O 0 1 N N N 25.773 13.954 31.497 7.506 2.275 -1.327 O9P UT7 11 UT7 CAP C7 C 0 1 N N R 26.350 12.495 33.250 6.380 2.398 0.743 CAP UT7 12 UT7 OAP O4 O 0 1 N N N 26.820 12.633 34.611 6.590 1.850 2.046 OAP UT7 13 UT7 CBP C8 C 0 1 N N N 27.307 11.555 32.501 4.957 2.081 0.280 CBP UT7 14 UT7 CDP C9 C 0 1 N N N 26.654 11.175 31.179 4.681 2.792 -1.046 CDP UT7 15 UT7 CEP C10 C 0 1 N N N 28.675 12.219 32.254 4.808 0.570 0.090 CEP UT7 16 UT7 CCP C11 C 0 1 N N N 27.542 10.253 33.277 3.958 2.563 1.334 CCP UT7 17 UT7 O6A O5 O 0 1 N N N 26.294 9.538 33.514 2.629 2.266 0.902 O6A UT7 18 UT7 P2A P1 P 0 1 N N N 25.890 9.183 35.033 1.322 2.634 1.768 P2A UT7 19 UT7 O4A O6 O 0 1 N N N 24.515 8.571 34.882 1.330 4.080 2.082 O4A UT7 20 UT7 O5A O7 O 0 1 N N N 25.942 10.361 35.949 1.329 1.788 3.137 O5A UT7 21 UT7 O3A O8 O 0 1 N N N 26.900 8.002 35.405 -0.000 2.276 0.922 O3A UT7 22 UT7 P1A P2 P 0 1 N N N 28.025 7.974 36.569 -1.540 2.741 1.003 P1A UT7 23 UT7 O1A O9 O 0 1 N N N 29.166 8.944 36.196 -1.953 2.835 2.421 O1A UT7 24 UT7 O2A O10 O 0 1 N N N 27.402 8.250 37.913 -1.703 4.180 0.299 O2A UT7 25 UT7 O5B O11 O 0 1 N N N 28.547 6.481 36.415 -2.466 1.664 0.244 O5B UT7 26 UT7 C5B C12 C 0 1 N N N 27.719 5.321 36.690 -3.893 1.739 0.229 C5B UT7 27 UT7 C4B C13 C 0 1 N N R 28.484 4.048 36.400 -4.457 0.567 -0.577 C4B UT7 28 UT7 C3B C14 C 0 1 N N S 29.878 3.901 37.020 -5.990 0.695 -0.712 C3B UT7 29 UT7 O3B O12 O 0 1 N N N 30.123 2.492 37.224 -6.335 1.261 -1.979 O3B UT7 30 UT7 P3B P3 P 0 1 N N N 31.048 1.859 38.434 -7.152 2.639 -2.130 P3B UT7 31 UT7 O9A O13 O 0 1 N N N 32.421 2.484 38.256 -8.635 2.452 -1.533 O9A UT7 32 UT7 O8A O14 O 0 1 N N N 30.984 0.331 38.228 -6.453 3.712 -1.388 O8A UT7 33 UT7 O7A O15 O 0 1 N N N 30.398 2.452 39.653 -7.247 3.039 -3.687 O7A UT7 34 UT7 C2B C15 C 0 1 N N R 30.789 4.513 35.966 -6.499 -0.760 -0.613 C2B UT7 35 UT7 O2B O16 O 0 1 N N N 32.140 4.121 36.052 -7.174 -1.138 -1.814 O2B UT7 36 UT7 O4B O17 O 0 1 N N N 28.758 4.007 34.962 -4.252 -0.675 0.132 O4B UT7 37 UT7 C1B C16 C 0 1 N N R 30.154 3.907 34.721 -5.213 -1.596 -0.428 C1B UT7 38 UT7 N9A N3 N 0 1 Y N N 30.482 4.603 33.481 -5.454 -2.706 0.496 N9A UT7 39 UT7 C4A C17 C 0 1 Y N N 30.476 3.966 32.320 -5.918 -3.954 0.163 C4A UT7 40 UT7 N3A N4 N 0 1 Y N N 30.131 2.725 31.918 -6.276 -4.551 -0.969 N3A UT7 41 UT7 C2A C18 C 0 1 Y N N 30.170 2.401 30.616 -6.693 -5.799 -0.967 C2A UT7 42 UT7 C8A C19 C 0 1 Y N N 30.874 5.885 33.308 -5.254 -2.691 1.845 C8A UT7 43 UT7 N7A N5 N 0 1 Y N N 31.073 6.115 31.982 -5.571 -3.846 2.354 N7A UT7 44 UT7 C5A C20 C 0 1 Y N N 30.810 4.957 31.349 -5.990 -4.674 1.367 C5A UT7 45 UT7 C6A C21 C 0 1 Y N N 30.856 4.564 29.985 -6.444 -6.003 1.319 C6A UT7 46 UT7 N1A N6 N 0 1 Y N N 30.500 3.314 29.671 -6.778 -6.516 0.139 N1A UT7 47 UT7 N6A N7 N 0 1 N N N 31.213 5.416 29.005 -6.536 -6.763 2.472 N6A UT7 48 UT7 H1 H1 H 0 1 N N N 28.096 20.567 27.843 12.330 -6.457 -0.306 H1 UT7 49 UT7 H2 H2 H 0 1 N N N 27.664 21.983 29.625 13.434 -4.341 -0.211 H2 UT7 50 UT7 H3 H3 H 0 1 N N N 26.649 20.500 29.652 13.630 -5.120 -1.799 H3 UT7 51 UT7 H4 H4 H 0 1 N N N 29.386 20.755 30.997 12.942 -2.794 -2.129 H4 UT7 52 UT7 H5 H5 H 0 1 N N N 27.821 20.994 31.845 11.607 -3.870 -2.609 H5 UT7 53 UT7 H6 H6 H 0 1 N N N 28.995 18.420 30.981 11.269 -3.191 0.112 H6 UT7 54 UT7 H7 H7 H 0 1 N N N 27.468 16.384 31.238 8.948 -1.824 0.198 H7 UT7 55 UT7 H8 H8 H 0 1 N N N 28.362 16.841 32.727 10.282 -0.748 0.678 H8 UT7 56 UT7 H9 H9 H 0 1 N N N 26.208 16.890 33.961 9.719 0.785 -1.188 H9 UT7 57 UT7 H10 H10 H 0 1 N N N 25.373 16.332 32.472 8.384 -0.291 -1.668 H10 UT7 58 UT7 H11 H11 H 0 1 N N N 26.972 14.710 34.322 8.045 0.387 1.053 H11 UT7 59 UT7 H12 H12 H 0 1 N N N 25.359 12.018 33.265 6.518 3.479 0.778 H12 UT7 60 UT7 H13 H13 H 0 1 N N N 26.239 13.212 35.090 6.484 0.890 2.091 H13 UT7 61 UT7 H14 H14 H 0 1 N N N 25.680 10.703 31.373 5.341 2.393 -1.816 H14 UT7 62 UT7 H15 H15 H 0 1 N N N 26.508 12.079 30.569 3.644 2.630 -1.337 H15 UT7 63 UT7 H16 H16 H 0 1 N N N 27.302 10.469 30.639 4.863 3.861 -0.930 H16 UT7 64 UT7 H17 H17 H 0 1 N N N 29.132 12.487 33.218 5.004 0.064 1.034 H17 UT7 65 UT7 H18 H18 H 0 1 N N N 29.332 11.517 31.719 3.794 0.344 -0.241 H18 UT7 66 UT7 H19 H19 H 0 1 N N N 28.538 13.127 31.648 5.519 0.227 -0.661 H19 UT7 67 UT7 H20 H20 H 0 1 N N N 28.218 9.608 32.696 4.154 2.056 2.279 H20 UT7 68 UT7 H21 H21 H 0 1 N N N 28.006 10.493 34.245 4.064 3.639 1.470 H21 UT7 69 UT7 H22 H22 H 0 1 N N N 25.074 10.533 36.294 1.325 0.829 3.007 H22 UT7 70 UT7 H23 H23 H 0 1 N N N 27.831 8.997 38.314 -1.450 4.192 -0.634 H23 UT7 71 UT7 H24 H24 H 0 1 N N N 26.821 5.357 36.055 -4.270 1.692 1.251 H24 UT7 72 UT7 H25 H25 H 0 1 N N N 27.420 5.331 37.749 -4.203 2.678 -0.230 H25 UT7 73 UT7 H26 H26 H 0 1 N N N 27.870 3.182 36.689 -3.990 0.525 -1.561 H26 UT7 74 UT7 H27 H27 H 0 1 N N N 29.941 4.466 37.962 -6.396 1.301 0.098 H27 UT7 75 UT7 H28 H28 H 0 1 N N N 33.051 1.808 38.037 -9.153 1.764 -1.972 H28 UT7 76 UT7 H29 H29 H 0 1 N N N 30.006 1.759 40.172 -7.728 3.861 -3.853 H29 UT7 77 UT7 H30 H30 H 0 1 N N N 30.678 5.607 35.956 -7.159 -0.876 0.247 H30 UT7 78 UT7 H31 H31 H 0 1 N N N 32.532 4.501 36.830 -7.514 -2.043 -1.806 H31 UT7 79 UT7 H32 H32 H 0 1 N N N 30.454 2.851 34.646 -4.863 -1.971 -1.390 H32 UT7 80 UT7 H33 H33 H 0 1 N N N 29.933 1.391 30.315 -6.977 -6.254 -1.904 H33 UT7 81 UT7 H34 H34 H 0 1 N N N 31.008 6.611 34.096 -4.887 -1.845 2.407 H34 UT7 82 UT7 H35 H35 H 0 1 N N N 31.154 4.952 28.121 -6.286 -6.378 3.327 H35 UT7 83 UT7 H36 H36 H 0 1 N N N 30.598 6.205 29.009 -6.851 -7.679 2.426 H36 UT7 84 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UT7 O1P C2P SING N N 1 UT7 N6A C6A SING N N 2 UT7 N1A C6A DOUB Y N 3 UT7 N1A C2A SING Y N 4 UT7 C2P C3P SING N N 5 UT7 C6A C5A SING Y N 6 UT7 C2A N3A DOUB Y N 7 UT7 C3P N4P SING N N 8 UT7 CDP CBP SING N N 9 UT7 N4P C5P SING N N 10 UT7 C5A N7A SING Y N 11 UT7 C5A C4A DOUB Y N 12 UT7 O9P C9P DOUB N N 13 UT7 C5P O5P DOUB N N 14 UT7 C5P C6P SING N N 15 UT7 N3A C4A SING Y N 16 UT7 N7A C8A DOUB Y N 17 UT7 C6P C7P SING N N 18 UT7 CEP CBP SING N N 19 UT7 C4A N9A SING Y N 20 UT7 CBP CAP SING N N 21 UT7 CBP CCP SING N N 22 UT7 C9P CAP SING N N 23 UT7 C9P N8P SING N N 24 UT7 C7P N8P SING N N 25 UT7 CAP OAP SING N N 26 UT7 CCP O6A SING N N 27 UT7 C8A N9A SING Y N 28 UT7 N9A C1B SING N N 29 UT7 O6A P2A SING N N 30 UT7 C1B O4B SING N N 31 UT7 C1B C2B SING N N 32 UT7 O4A P2A DOUB N N 33 UT7 O4B C4B SING N N 34 UT7 P2A O3A SING N N 35 UT7 P2A O5A SING N N 36 UT7 O3A P1A SING N N 37 UT7 C2B O2B SING N N 38 UT7 C2B C3B SING N N 39 UT7 O1A P1A DOUB N N 40 UT7 C4B C5B SING N N 41 UT7 C4B C3B SING N N 42 UT7 O5B P1A SING N N 43 UT7 O5B C5B SING N N 44 UT7 P1A O2A SING N N 45 UT7 C3B O3B SING N N 46 UT7 O3B P3B SING N N 47 UT7 O8A P3B DOUB N N 48 UT7 O9A P3B SING N N 49 UT7 P3B O7A SING N N 50 UT7 O1P H1 SING N N 51 UT7 C2P H2 SING N N 52 UT7 C2P H3 SING N N 53 UT7 C3P H4 SING N N 54 UT7 C3P H5 SING N N 55 UT7 N4P H6 SING N N 56 UT7 C6P H7 SING N N 57 UT7 C6P H8 SING N N 58 UT7 C7P H9 SING N N 59 UT7 C7P H10 SING N N 60 UT7 N8P H11 SING N N 61 UT7 CAP H12 SING N N 62 UT7 OAP H13 SING N N 63 UT7 CDP H14 SING N N 64 UT7 CDP H15 SING N N 65 UT7 CDP H16 SING N N 66 UT7 CEP H17 SING N N 67 UT7 CEP H18 SING N N 68 UT7 CEP H19 SING N N 69 UT7 CCP H20 SING N N 70 UT7 CCP H21 SING N N 71 UT7 O5A H22 SING N N 72 UT7 O2A H23 SING N N 73 UT7 C5B H24 SING N N 74 UT7 C5B H25 SING N N 75 UT7 C4B H26 SING N N 76 UT7 C3B H27 SING N N 77 UT7 O9A H28 SING N N 78 UT7 O7A H29 SING N N 79 UT7 C2B H30 SING N N 80 UT7 O2B H31 SING N N 81 UT7 C1B H32 SING N N 82 UT7 C2A H33 SING N N 83 UT7 C8A H34 SING N N 84 UT7 N6A H35 SING N N 85 UT7 N6A H36 SING N N 86 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UT7 SMILES ACDLabs 12.01 "OCCNC(=O)CCNC(C(O)C(COP(OP(O)(=O)OCC1C(OP(O)(O)=O)C(O)C(O1)n3c2ncnc(c2nc3)N)(O)=O)(C)C)=O" UT7 InChI InChI 1.03 "InChI=1S/C21H36N7O17P3/c1-21(2,16(32)19(33)24-4-3-12(30)23-5-6-29)8-42-48(39,40)45-47(37,38)41-7-11-15(44-46(34,35)36)14(31)20(43-11)28-10-27-13-17(22)25-9-26-18(13)28/h9-11,14-16,20,29,31-32H,3-8H2,1-2H3,(H,23,30)(H,24,33)(H,37,38)(H,39,40)(H2,22,25,26)(H2,34,35,36)/t11-,14-,15-,16+,20-/m1/s1" UT7 InChIKey InChI 1.03 JHUGPYYCEXFQAL-IBOSZNHHSA-N UT7 SMILES_CANONICAL CACTVS 3.385 "CC(C)(CO[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[C@@H](O)C(=O)NCCC(=O)NCCO" UT7 SMILES CACTVS 3.385 "CC(C)(CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[CH](O)C(=O)NCCC(=O)NCCO" UT7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(COP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)[C@H](C(=O)NCCC(=O)NCCO)O" UT7 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)C(C(=O)NCCC(=O)NCCO)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier UT7 "SYSTEMATIC NAME" ACDLabs 12.01 "[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]methyl (3R)-3-hydroxy-4-({3-[(2-hydroxyethyl)amino]-3-oxopropyl}amino)-2,2-dimethyl-4-oxobutyl dihydrogen diphosphate (non-preferred name)" UT7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(3~{R})-4-[[3-(2-hydroxyethylamino)-3-oxidanylidene-propyl]amino]-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-butyl] hydrogen phosphate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id UT7 _pdbx_chem_comp_synonyms.name "[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]methyl (3R)-3-hydroxy-4-({3-[(2-hydroxyethyl)amino]-3-oxopropyl}amino)-2,2-dimethyl-4-oxobutyl dihydrogen diphosphate" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UT7 "Create component" 2020-06-01 RCSB UT7 "Modify synonyms" 2020-06-05 PDBE UT7 "Initial release" 2021-06-02 RCSB ##