data_UTC # _chem_comp.id UTC _chem_comp.name "(5R,6S,9aS)-N-benzyl-6-[(4-hydroxyphenyl)methyl]-8-[(naphthalen-1-yl)methyl]-4,7-dioxohexahydro-2H-pyrazino[1,2-a]pyrimidine-1(6H)-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H32 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-08-25 _chem_comp.pdbx_modified_date 2023-06-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 548.632 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UTC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8E7P _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UTC CAX C1 C 0 1 Y N N -38.885 63.576 -67.018 -4.436 -1.210 2.184 CAX UTC 1 UTC CAW C2 C 0 1 Y N N -37.779 62.749 -66.986 -5.644 -1.816 1.845 CAW UTC 2 UTC CAV C3 C 0 1 Y N N -37.733 61.583 -67.768 -6.335 -1.431 0.737 CAV UTC 3 UTC CAU C4 C 0 1 Y N N -38.779 61.286 -68.591 -5.824 -0.408 -0.080 CAU UTC 4 UTC CAT C5 C 0 1 Y N N -38.750 60.151 -69.368 -6.509 0.016 -1.232 CAT UTC 5 UTC CAS C6 C 0 1 Y N N -39.796 59.816 -70.229 -5.983 1.010 -1.999 CAS UTC 6 UTC CAR C7 C 0 1 Y N N -40.888 60.684 -70.281 -4.775 1.616 -1.661 CAR UTC 7 UTC CAQ C8 C 0 1 Y N N -40.884 61.858 -69.489 -4.084 1.231 -0.553 CAQ UTC 8 UTC CAP C9 C 0 1 Y N N -39.879 62.171 -68.645 -4.595 0.208 0.264 CAP UTC 9 UTC CAY C10 C 0 1 Y N N -39.900 63.295 -67.897 -3.913 -0.213 1.419 CAY UTC 10 UTC CAZ C11 C 0 1 N N N -41.114 64.300 -67.899 -2.608 0.434 1.806 CAZ UTC 11 UTC NBH N1 N 0 1 N N N -41.171 65.152 -69.149 -1.519 -0.161 1.029 NBH UTC 12 UTC CBI C12 C 0 1 N N N -40.019 66.009 -69.409 -1.101 0.523 -0.188 CBI UTC 13 UTC CBO C13 C 0 1 N N S -40.048 66.454 -70.816 0.323 0.113 -0.575 CBO UTC 14 UTC C C14 C 0 1 N N N -42.328 65.197 -69.841 -0.974 -1.290 1.486 C UTC 15 UTC O O1 O 0 1 N N N -43.271 64.442 -69.491 -1.456 -1.805 2.472 O UTC 16 UTC CA C15 C 0 1 N N S -42.471 65.920 -71.071 0.208 -1.954 0.836 CA UTC 17 UTC CB C16 C 0 1 N N N -42.397 64.846 -72.158 1.452 -1.751 1.704 CB UTC 18 UTC CG C17 C 0 1 Y N N -42.397 65.409 -73.587 2.607 -2.519 1.114 CG UTC 19 UTC CD1 C18 C 0 1 Y N N -41.199 65.353 -74.343 3.437 -1.914 0.189 CD1 UTC 20 UTC CE1 C19 C 0 1 Y N N -41.203 65.858 -75.634 4.496 -2.615 -0.354 CE1 UTC 21 UTC CZ C20 C 0 1 Y N N -42.397 66.421 -76.157 4.727 -3.928 0.031 CZ UTC 22 UTC OH O2 O 0 1 N N N -42.412 66.896 -77.436 5.768 -4.621 -0.500 OH UTC 23 UTC CE2 C21 C 0 1 Y N N -43.591 66.490 -75.410 3.892 -4.533 0.960 CE2 UTC 24 UTC CD2 C22 C 0 1 Y N N -43.591 65.964 -74.115 2.838 -3.825 1.503 CD2 UTC 25 UTC N N2 N 0 1 N N N -41.433 66.916 -71.151 0.424 -1.345 -0.491 N UTC 26 UTC CBK C23 C 0 1 N N N -41.723 68.219 -71.440 0.696 -2.133 -1.537 CBK UTC 27 UTC OBA O3 O 0 1 N N N -42.904 68.473 -71.739 0.698 -3.334 -1.372 OBA UTC 28 UTC CBL C24 C 0 1 N N N -40.776 69.254 -71.462 0.998 -1.597 -2.908 CBL UTC 29 UTC CBM C25 C 0 1 N N N -39.546 68.885 -70.612 0.283 -0.252 -3.087 CBM UTC 30 UTC NBN N3 N 0 1 N N N -39.192 67.551 -71.132 0.613 0.580 -1.928 NBN UTC 31 UTC CBE C26 C 0 1 N N N -38.263 67.356 -72.087 1.181 1.787 -2.118 CBE UTC 32 UTC OBD O4 O 0 1 N N N -38.117 66.236 -72.580 1.342 2.213 -3.246 OBD UTC 33 UTC NBC N4 N 0 1 N N N -37.552 68.400 -72.492 1.572 2.523 -1.059 NBC UTC 34 UTC CAG C27 C 0 1 N N N -36.512 68.253 -73.550 2.290 3.783 -1.266 CAG UTC 35 UTC CAF C28 C 0 1 Y N N -35.172 68.000 -72.951 2.610 4.404 0.069 CAF UTC 36 UTC CAA C29 C 0 1 Y N N -34.106 68.844 -73.261 1.713 5.274 0.660 CAA UTC 37 UTC CAB C30 C 0 1 Y N N -32.847 68.607 -72.711 2.007 5.844 1.885 CAB UTC 38 UTC CAC C31 C 0 1 Y N N -32.656 67.524 -71.932 3.198 5.544 2.519 CAC UTC 39 UTC CAD C32 C 0 1 Y N N -33.661 66.638 -71.704 4.095 4.673 1.928 CAD UTC 40 UTC CAE C33 C 0 1 Y N N -34.938 66.845 -72.219 3.799 4.100 0.706 CAE UTC 41 UTC H1 H1 H 0 1 N N N -38.950 64.431 -66.361 -3.908 -1.534 3.068 H1 UTC 42 UTC H2 H2 H 0 1 N N N -36.941 63.002 -66.353 -6.039 -2.602 2.471 H2 UTC 43 UTC H3 H3 H 0 1 N N N -36.876 60.927 -67.718 -7.270 -1.910 0.487 H3 UTC 44 UTC H4 H4 H 0 1 N N N -37.891 59.499 -69.310 -7.446 -0.444 -1.507 H4 UTC 45 UTC H5 H5 H 0 1 N N N -39.762 58.920 -70.831 -6.511 1.334 -2.884 H5 UTC 46 UTC H6 H6 H 0 1 N N N -41.730 60.462 -70.920 -4.380 2.402 -2.287 H6 UTC 47 UTC H7 H7 H 0 1 N N N -41.723 62.533 -69.564 -3.149 1.709 -0.303 H7 UTC 48 UTC H8 H8 H 0 1 N N N -41.022 64.963 -67.026 -2.658 1.504 1.602 H8 UTC 49 UTC H9 H9 H 0 1 N N N -42.048 63.723 -67.825 -2.425 0.275 2.869 H9 UTC 50 UTC H10 H10 H 0 1 N N N -39.093 65.446 -69.221 -1.782 0.264 -0.998 H10 UTC 51 UTC H11 H11 H 0 1 N N N -40.056 66.886 -68.746 -1.132 1.600 -0.023 H11 UTC 52 UTC H12 H12 H 0 1 N N N -39.800 65.599 -71.462 1.030 0.564 0.121 H12 UTC 53 UTC H13 H13 H 0 1 N N N -43.459 66.401 -71.114 0.012 -3.020 0.722 H13 UTC 54 UTC H14 H14 H 0 1 N N N -43.266 64.180 -72.048 1.701 -0.690 1.739 H14 UTC 55 UTC H15 H15 H 0 1 N N N -41.472 64.269 -72.013 1.253 -2.111 2.713 H15 UTC 56 UTC H16 H16 H 0 1 N N N -40.301 64.925 -73.922 3.257 -0.892 -0.111 H16 UTC 57 UTC H17 H17 H 0 1 N N N -40.307 65.824 -76.236 5.144 -2.143 -1.077 H17 UTC 58 UTC H18 H18 H 0 1 N N N -43.275 67.238 -77.637 6.591 -4.538 -0.000 H18 UTC 59 UTC H19 H19 H 0 1 N N N -44.481 66.937 -75.827 4.069 -5.555 1.261 H19 UTC 60 UTC H20 H20 H 0 1 N N N -44.493 65.980 -73.521 2.188 -4.295 2.227 H20 UTC 61 UTC H21 H21 H 0 1 N N N -40.458 69.430 -72.500 2.073 -1.455 -3.016 H21 UTC 62 UTC H22 H22 H 0 1 N N N -41.232 70.170 -71.058 0.644 -2.301 -3.661 H22 UTC 63 UTC H23 H23 H 0 1 N N N -38.726 69.602 -70.765 0.626 0.230 -4.002 H23 UTC 64 UTC H24 H24 H 0 1 N N N -39.800 68.841 -69.543 -0.795 -0.410 -3.136 H24 UTC 65 UTC H25 H25 H 0 1 N N N -37.716 69.297 -72.082 1.379 2.217 -0.158 H25 UTC 66 UTC H26 H26 H 0 1 N N N -36.471 69.177 -74.145 3.216 3.589 -1.808 H26 UTC 67 UTC H27 H27 H 0 1 N N N -36.779 67.409 -74.202 1.666 4.465 -1.844 H27 UTC 68 UTC H28 H28 H 0 1 N N N -34.256 69.681 -73.927 0.782 5.509 0.164 H28 UTC 69 UTC H29 H29 H 0 1 N N N -32.031 69.286 -72.908 1.306 6.524 2.346 H29 UTC 70 UTC H30 H30 H 0 1 N N N -31.689 67.357 -71.482 3.427 5.990 3.475 H30 UTC 71 UTC H31 H31 H 0 1 N N N -33.465 65.756 -71.112 5.025 4.439 2.424 H31 UTC 72 UTC H32 H32 H 0 1 N N N -35.726 66.125 -72.053 4.498 3.417 0.246 H32 UTC 73 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UTC OH CZ SING N N 1 UTC CZ CE1 DOUB Y N 2 UTC CZ CE2 SING Y N 3 UTC CE1 CD1 SING Y N 4 UTC CE2 CD2 DOUB Y N 5 UTC CD1 CG DOUB Y N 6 UTC CD2 CG SING Y N 7 UTC CG CB SING N N 8 UTC CAG CAF SING N N 9 UTC CAG NBC SING N N 10 UTC CAA CAF DOUB Y N 11 UTC CAA CAB SING Y N 12 UTC CAF CAE SING Y N 13 UTC CAB CAC DOUB Y N 14 UTC OBD CBE DOUB N N 15 UTC NBC CBE SING N N 16 UTC CAE CAD DOUB Y N 17 UTC CB CA SING N N 18 UTC CBE NBN SING N N 19 UTC CAC CAD SING Y N 20 UTC OBA CBK DOUB N N 21 UTC CBL CBK SING N N 22 UTC CBL CBM SING N N 23 UTC CBK N SING N N 24 UTC N CA SING N N 25 UTC N CBO SING N N 26 UTC NBN CBO SING N N 27 UTC NBN CBM SING N N 28 UTC CA C SING N N 29 UTC CBO CBI SING N N 30 UTC CAR CAS DOUB Y N 31 UTC CAR CAQ SING Y N 32 UTC CAS CAT SING Y N 33 UTC C O DOUB N N 34 UTC C NBH SING N N 35 UTC CAQ CAP DOUB Y N 36 UTC CBI NBH SING N N 37 UTC CAT CAU DOUB Y N 38 UTC NBH CAZ SING N N 39 UTC CAP CAU SING Y N 40 UTC CAP CAY SING Y N 41 UTC CAU CAV SING Y N 42 UTC CAZ CAY SING N N 43 UTC CAY CAX DOUB Y N 44 UTC CAV CAW DOUB Y N 45 UTC CAX CAW SING Y N 46 UTC CAX H1 SING N N 47 UTC CAW H2 SING N N 48 UTC CAV H3 SING N N 49 UTC CAT H4 SING N N 50 UTC CAS H5 SING N N 51 UTC CAR H6 SING N N 52 UTC CAQ H7 SING N N 53 UTC CAZ H8 SING N N 54 UTC CAZ H9 SING N N 55 UTC CBI H10 SING N N 56 UTC CBI H11 SING N N 57 UTC CBO H12 SING N N 58 UTC CA H13 SING N N 59 UTC CB H14 SING N N 60 UTC CB H15 SING N N 61 UTC CD1 H16 SING N N 62 UTC CE1 H17 SING N N 63 UTC OH H18 SING N N 64 UTC CE2 H19 SING N N 65 UTC CD2 H20 SING N N 66 UTC CBL H21 SING N N 67 UTC CBL H22 SING N N 68 UTC CBM H23 SING N N 69 UTC CBM H24 SING N N 70 UTC NBC H25 SING N N 71 UTC CAG H26 SING N N 72 UTC CAG H27 SING N N 73 UTC CAA H28 SING N N 74 UTC CAB H29 SING N N 75 UTC CAC H30 SING N N 76 UTC CAD H31 SING N N 77 UTC CAE H32 SING N N 78 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UTC SMILES ACDLabs 12.01 "Oc1ccc(cc1)CC1C(=O)N(CC2N1C(=O)CCN2C(=O)NCc1ccccc1)Cc1cccc2ccccc21" UTC InChI InChI 1.06 "InChI=1S/C33H32N4O4/c38-27-15-13-23(14-16-27)19-29-32(40)35(21-26-11-6-10-25-9-4-5-12-28(25)26)22-30-36(18-17-31(39)37(29)30)33(41)34-20-24-7-2-1-3-8-24/h1-16,29-30,38H,17-22H2,(H,34,41)/t29-,30+/m0/s1" UTC InChIKey InChI 1.06 HQWTUOLCGKIECB-XZWHSSHBSA-N UTC SMILES_CANONICAL CACTVS 3.385 "Oc1ccc(C[C@@H]2N3[C@H](CN(Cc4cccc5ccccc45)C2=O)N(CCC3=O)C(=O)NCc6ccccc6)cc1" UTC SMILES CACTVS 3.385 "Oc1ccc(C[CH]2N3[CH](CN(Cc4cccc5ccccc45)C2=O)N(CCC3=O)C(=O)NCc6ccccc6)cc1" UTC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CNC(=O)N2CCC(=O)N3[C@@H]2CN(C(=O)[C@@H]3Cc4ccc(cc4)O)Cc5cccc6c5cccc6" UTC SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CNC(=O)N2CCC(=O)N3C2CN(C(=O)C3Cc4ccc(cc4)O)Cc5cccc6c5cccc6" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier UTC "SYSTEMATIC NAME" ACDLabs 12.01 "(5R,6S,9aS)-N-benzyl-6-[(4-hydroxyphenyl)methyl]-8-[(naphthalen-1-yl)methyl]-4,7-dioxohexahydro-2H-pyrazino[1,2-a]pyrimidine-1(6H)-carboxamide" UTC "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(6~{S},9~{a}~{S})-6-[(4-hydroxyphenyl)methyl]-8-(naphthalen-1-ylmethyl)-4,7-bis(oxidanylidene)-~{N}-(phenylmethyl)-3,6,9,9~{a}-tetrahydro-2~{H}-pyrazino[1,2-a]pyrimidine-1-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UTC "Create component" 2022-08-25 RCSB UTC "Initial release" 2023-07-05 RCSB #