data_UTR # _chem_comp.id UTR _chem_comp.name "2-[[(2~{R},3~{S},4~{R},5~{R})-5-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy]prop-1-ynyl]-6-azanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylcarbamoyl]benzoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H31 N11 O10" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-07 _chem_comp.pdbx_modified_date 2025-03-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 717.646 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UTR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QGB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UTR C1 C4 C 0 1 Y N N N N N 20.482 11.230 13.099 3.835 -3.259 -0.600 C1 UTR 1 UTR C2 C5 C 0 1 Y N N N N N 20.311 12.341 12.452 3.861 -4.386 -1.442 C2 UTR 2 UTR C3 C6 C 0 1 Y N N N N N 21.370 13.036 12.015 5.111 -4.840 -1.903 C3 UTR 3 UTR C4 C8 C 0 1 Y N N N N N 18.479 11.490 12.905 1.779 -3.996 -0.950 C4 UTR 4 UTR N1 N1 N 0 1 Y N N N N N 22.550 12.639 12.255 6.202 -4.186 -1.520 N1 UTR 5 UTR N2 N3 N 0 1 Y N N N N N 21.682 10.821 13.322 4.981 -2.671 -0.272 N2 UTR 6 UTR C5 C1* C 0 1 N N R N N N 16.831 8.290 8.985 -5.690 -0.129 0.553 C5 UTR 7 UTR C6 C2 C 0 1 Y N N N N N 22.707 11.528 12.906 6.127 -3.133 -0.728 C6 UTR 8 UTR C7 C2* C 0 1 N N R N N N 16.640 9.401 8.079 -6.883 -1.106 0.712 C7 UTR 9 UTR C8 C3* C 0 1 N N S N N N 15.526 10.118 8.769 -6.207 -2.342 1.354 C8 UTR 10 UTR C9 C4* C 0 1 N N R N N N 15.641 9.582 10.144 -4.715 -2.180 1.004 C9 UTR 11 UTR C10 C5* C 0 1 N N N N N N 14.366 9.914 10.995 -4.232 -3.398 0.214 C10 UTR 12 UTR C11 CAB C 0 1 N N R N N N 18.419 9.581 15.243 2.258 -2.274 2.046 C11 UTR 13 UTR C12 CAC C 0 1 N N S N N N 18.113 8.140 15.417 2.243 -0.860 2.677 C12 UTR 14 UTR C13 CAI C 0 1 N N R N N N 19.313 9.478 14.128 1.987 -1.967 0.552 C13 UTR 15 UTR C14 CAK C 0 1 N N R N N N 18.135 7.653 14.076 2.510 0.085 1.489 C14 UTR 16 UTR C15 CAL C 0 1 N N N N N N 16.727 7.690 13.617 3.766 0.916 1.758 C15 UTR 17 UTR C16 CAN C 0 1 N N N N N N 16.250 5.515 12.600 5.080 2.627 0.626 C16 UTR 18 UTR C17 CAO C 0 1 Y N N N N N 15.885 4.809 11.484 5.237 3.657 -0.426 C17 UTR 19 UTR C18 CAP C 0 1 Y N N N N N 16.837 4.003 10.908 5.244 3.291 -1.768 C18 UTR 20 UTR C19 CAQ C 0 1 Y N N N N N 16.586 3.239 9.809 5.391 4.256 -2.747 C19 UTR 21 UTR C20 CAS C 0 1 Y N N N N N 18.415 4.249 7.431 -7.289 3.831 -1.846 C20 UTR 22 UTR C21 CAT C 0 1 Y N N N N N 17.575 5.236 7.576 -6.639 2.597 -1.678 C21 UTR 23 UTR C22 CAV C 0 1 Y N N N N N 16.023 6.582 7.532 -5.550 0.726 -1.817 C22 UTR 24 UTR C23 CAZ C 0 1 Y N N N N N 14.631 4.843 10.911 5.373 5.013 -0.074 C23 UTR 25 UTR C24 CBA C 0 1 Y N N N N N 14.393 4.077 9.807 5.521 5.971 -1.073 C24 UTR 26 UTR C25 CBB C 0 1 Y N N N N N 15.355 3.284 9.257 5.531 5.588 -2.401 C25 UTR 27 UTR C26 CBC C 0 1 Y N N N N N 19.870 5.290 8.828 -7.866 3.794 0.388 C26 UTR 28 UTR C27 CBE C 0 1 Y N N N N N 17.874 6.256 8.323 -6.645 2.013 -0.400 C27 UTR 29 UTR C28 CBL C 0 1 N N N N N N 13.608 5.571 11.407 5.361 5.417 1.348 C28 UTR 30 UTR C29 CBS C 0 1 N N N N N N 15.012 10.843 13.235 -2.282 -4.339 -0.815 C29 UTR 31 UTR C30 CBT C 0 1 N N N N N N 16.452 11.170 13.075 -0.816 -4.215 -0.863 C30 UTR 32 UTR C31 CBU C 0 1 N N N N N N 17.193 11.307 13.003 0.353 -4.117 -0.902 C31 UTR 33 UTR N3 N6 N 0 1 N N N N N N 21.192 14.137 11.371 5.201 -5.943 -2.733 N3 UTR 34 UTR N4 N7 N 0 1 Y N N N N N 19.039 12.493 12.351 2.584 -4.789 -1.619 N4 UTR 35 UTR N5 N9 N 0 1 Y N N N N N 19.367 10.698 13.395 2.514 -3.036 -0.299 N5 UTR 36 UTR N6 NAF N 0 1 N N N N N N 18.056 3.279 6.677 -7.316 4.454 -3.082 N6 UTR 37 UTR N7 NAM N 0 1 N N N N N N 16.369 6.807 12.534 3.974 1.857 0.655 N7 UTR 38 UTR N8 NAR N 0 1 Y N N N N N 19.540 4.258 8.050 -7.882 4.383 -0.793 N8 UTR 39 UTR N9 NAU N 0 1 Y N N N N N 16.417 5.459 7.096 -5.955 1.761 -2.495 N9 UTR 40 UTR N10 NBD N 0 1 Y N N N N N 19.008 6.294 8.950 -7.261 2.643 0.595 N10 UTR 41 UTR N11 NBF N 0 1 Y N N N N N 16.912 7.084 8.291 -5.951 0.835 -0.519 N11 UTR 42 UTR O1 O2* O 0 1 N N N N N N 17.788 10.131 8.089 -7.877 -0.559 1.581 O1 UTR 43 UTR O2 O3* O 0 1 N N N N N N 15.721 11.433 8.750 -6.392 -2.333 2.771 O2 UTR 44 UTR O3 O4* O 0 1 N N N N N N 15.734 8.338 9.759 -4.590 -0.995 0.200 O3 UTR 45 UTR O4 O5* O 0 1 N N N N N N 14.506 9.801 12.397 -2.820 -3.304 0.010 O4 UTR 46 UTR O5 OAA O 0 1 N N N N N N 19.004 10.022 16.315 1.221 -3.089 2.596 O5 UTR 47 UTR O6 OAD O 0 1 N N N N N N 19.074 7.573 16.123 0.966 -0.586 3.258 O6 UTR 48 UTR O7 OAE O 0 1 N N N N N N 16.503 4.900 13.570 5.948 2.477 1.463 O7 UTR 49 UTR O8 OAJ O 0 1 N N N N N N 18.597 8.656 13.381 2.705 -0.735 0.325 O8 UTR 50 UTR O9 OBM O 0 1 N N N N N N 12.796 6.071 10.688 5.121 4.596 2.211 O9 UTR 51 UTR O10 OBV O 0 1 N N N N N N 13.470 5.680 12.590 5.615 6.696 1.687 O10 UTR 52 UTR H1 H1 H 0 1 N N N N N N 17.743 8.451 9.579 -5.489 0.388 1.492 H1 UTR 53 UTR H2 H2 H 0 1 N N N N N N 23.707 11.175 13.111 7.039 -2.631 -0.442 H2 UTR 54 UTR H3 H3 H 0 1 N N N N N N 16.340 9.068 7.074 -7.312 -1.357 -0.258 H3 UTR 55 UTR H4 H4 H 0 1 N N N N N N 14.561 9.827 8.328 -6.603 -3.260 0.922 H4 UTR 56 UTR H5 H5 H 0 1 N N N N N N 16.540 9.967 10.648 -4.129 -2.075 1.918 H5 UTR 57 UTR H6 H6 H 0 1 N N N N N N 14.072 10.950 10.769 -4.458 -4.307 0.772 H6 UTR 58 UTR H7 H7 H 0 1 N N N N N N 13.565 9.229 10.681 -4.737 -3.429 -0.751 H7 UTR 59 UTR H8 H8 H 0 1 N N N N N N 17.510 10.139 14.976 3.232 -2.747 2.176 H8 UTR 60 UTR H9 H9 H 0 1 N N N N N N 17.118 8.013 15.868 3.031 -0.767 3.423 H9 UTR 61 UTR H10 H10 H 0 1 N N N N N N 20.307 9.101 14.410 0.920 -1.829 0.376 H10 UTR 62 UTR H11 H11 H 0 1 N N N N N N 18.623 6.676 13.944 1.654 0.744 1.341 H11 UTR 63 UTR H12 H12 H 0 1 N N N N N N 16.090 7.435 14.477 3.644 1.469 2.689 H12 UTR 64 UTR H13 H13 H 0 1 N N N N N N 16.510 8.718 13.292 4.628 0.254 1.838 H13 UTR 65 UTR H14 H14 H 0 1 N N N N N N 17.824 3.974 11.345 5.136 2.252 -2.045 H14 UTR 66 UTR H15 H15 H 0 1 N N N N N N 17.356 2.610 9.388 5.397 3.968 -3.788 H15 UTR 67 UTR H16 H16 H 0 1 N N N N N N 15.076 7.043 7.295 -4.981 -0.097 -2.223 H16 UTR 68 UTR H17 H17 H 0 1 N N N N N N 13.412 4.100 9.355 5.626 7.013 -0.811 H17 UTR 69 UTR H18 H18 H 0 1 N N N N N N 15.133 2.693 8.381 5.646 6.334 -3.174 H18 UTR 70 UTR H19 H19 H 0 1 N N N N N N 20.817 5.309 9.347 -8.360 4.278 1.218 H19 UTR 71 UTR H20 H20 H 0 1 N N N N N N 14.850 10.542 14.280 -2.688 -4.249 -1.822 H20 UTR 72 UTR H21 H21 H 0 1 N N N N N N 14.435 11.755 13.023 -2.551 -5.311 -0.400 H21 UTR 73 UTR H22 H22 H 0 1 N N N N N N 22.079 14.538 11.143 4.397 -6.413 -3.005 H22 UTR 74 UTR H23 H23 H 0 1 N N N N N N 20.684 13.953 10.530 6.068 -6.247 -3.044 H23 UTR 75 UTR H24 H24 H 0 1 N N N N N N 18.772 2.581 6.667 -6.883 4.039 -3.844 H24 UTR 76 UTR H25 H25 H 0 1 N N N N N N 17.208 2.881 7.027 -7.768 5.306 -3.186 H25 UTR 77 UTR H26 H26 H 0 1 N N N N N N 16.195 7.231 11.645 3.316 1.926 -0.054 H26 UTR 78 UTR H27 H27 H 0 1 N N N N N N 17.697 10.872 7.502 -8.644 -1.134 1.712 H27 UTR 79 UTR H28 H28 H 0 1 N N N N N N 15.002 11.867 9.194 -7.318 -2.373 3.047 H28 UTR 80 UTR H29 H29 H 0 1 N N N N N N 19.203 10.945 16.211 1.298 -3.235 3.549 H29 UTR 81 UTR H30 H30 H 0 1 N N N N N N 18.881 6.650 16.237 0.722 -1.189 3.973 H30 UTR 82 UTR H31 H31 H 0 1 N N N N N N 12.683 6.180 12.773 5.595 6.913 2.629 H31 UTR 83 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UTR C1 C2 DOUB Y N 1 UTR C1 N2 SING Y N 2 UTR C1 N5 SING Y N 3 UTR C2 C3 SING Y N 4 UTR C2 N4 SING Y N 5 UTR C3 N1 DOUB Y N 6 UTR C3 N3 SING N N 7 UTR C4 C31 SING N N 8 UTR C4 N4 DOUB Y N 9 UTR C4 N5 SING Y N 10 UTR N1 C6 SING Y N 11 UTR N2 C6 DOUB Y N 12 UTR C5 C7 SING N N 13 UTR C5 N11 SING N N 14 UTR C5 O3 SING N N 15 UTR C7 C8 SING N N 16 UTR C7 O1 SING N N 17 UTR C8 C9 SING N N 18 UTR C8 O2 SING N N 19 UTR C9 C10 SING N N 20 UTR C9 O3 SING N N 21 UTR C10 O4 SING N N 22 UTR C11 C12 SING N N 23 UTR C11 C13 SING N N 24 UTR C11 O5 SING N N 25 UTR C12 C14 SING N N 26 UTR C12 O6 SING N N 27 UTR C13 N5 SING N N 28 UTR C13 O8 SING N N 29 UTR C14 C15 SING N N 30 UTR C14 O8 SING N N 31 UTR C15 N7 SING N N 32 UTR C16 C17 SING N N 33 UTR C16 N7 SING N N 34 UTR C16 O7 DOUB N N 35 UTR C17 C18 DOUB Y N 36 UTR C17 C23 SING Y N 37 UTR C18 C19 SING Y N 38 UTR C19 C25 DOUB Y N 39 UTR C20 C21 DOUB Y N 40 UTR C20 N6 SING N N 41 UTR C20 N8 SING Y N 42 UTR C21 C27 SING Y N 43 UTR C21 N9 SING Y N 44 UTR C22 N9 DOUB Y N 45 UTR C22 N11 SING Y N 46 UTR C23 C24 DOUB Y N 47 UTR C23 C28 SING N N 48 UTR C24 C25 SING Y N 49 UTR C26 N8 DOUB Y N 50 UTR C26 N10 SING Y N 51 UTR C27 N10 DOUB Y N 52 UTR C27 N11 SING Y N 53 UTR C28 O9 DOUB N N 54 UTR C28 O10 SING N N 55 UTR C29 C30 SING N N 56 UTR C29 O4 SING N N 57 UTR C31 C30 TRIP N N 58 UTR C5 H1 SING N N 59 UTR C6 H2 SING N N 60 UTR C7 H3 SING N N 61 UTR C8 H4 SING N N 62 UTR C9 H5 SING N N 63 UTR C10 H6 SING N N 64 UTR C10 H7 SING N N 65 UTR C11 H8 SING N N 66 UTR C12 H9 SING N N 67 UTR C13 H10 SING N N 68 UTR C14 H11 SING N N 69 UTR C15 H12 SING N N 70 UTR C15 H13 SING N N 71 UTR C18 H14 SING N N 72 UTR C19 H15 SING N N 73 UTR C22 H16 SING N N 74 UTR C24 H17 SING N N 75 UTR C25 H18 SING N N 76 UTR C26 H19 SING N N 77 UTR C29 H20 SING N N 78 UTR C29 H21 SING N N 79 UTR N3 H22 SING N N 80 UTR N3 H23 SING N N 81 UTR N6 H24 SING N N 82 UTR N6 H25 SING N N 83 UTR N7 H26 SING N N 84 UTR O1 H27 SING N N 85 UTR O2 H28 SING N N 86 UTR O5 H29 SING N N 87 UTR O6 H30 SING N N 88 UTR O10 H31 SING N N 89 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UTR InChI InChI 1.06 "InChI=1S/C31H31N11O10/c32-24-18-26(37-10-35-24)41(12-39-18)29-22(45)21(44)16(52-29)9-50-7-3-6-17-40-19-25(33)36-11-38-27(19)42(17)30-23(46)20(43)15(51-30)8-34-28(47)13-4-1-2-5-14(13)31(48)49/h1-2,4-5,10-12,15-16,20-23,29-30,43-46H,7-9H2,(H,34,47)(H,48,49)(H2,32,35,37)(H2,33,36,38)/t15-,16-,20-,21-,22-,23-,29-,30-/m1/s1" UTR InChIKey InChI 1.06 NRNHLMJONNXRGX-OJLPNRDSSA-N UTR SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](COCC#Cc4nc5c(N)ncnc5n4[C@@H]6O[C@H](CNC(=O)c7ccccc7C(O)=O)[C@@H](O)[C@H]6O)[C@@H](O)[C@H]3O" UTR SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](COCC#Cc4nc5c(N)ncnc5n4[CH]6O[CH](CNC(=O)c7ccccc7C(O)=O)[CH](O)[CH]6O)[CH](O)[CH]3O" UTR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)C(=O)NC[C@@H]2[C@H]([C@H]([C@@H](O2)n3c(nc4c3ncnc4N)C#CCOC[C@@H]5[C@H]([C@H]([C@@H](O5)n6cnc7c6ncnc7N)O)O)O)O)C(=O)O" UTR SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)C(=O)NCC2C(C(C(O2)n3c(nc4c3ncnc4N)C#CCOCC5C(C(C(O5)n6cnc7c6ncnc7N)O)O)O)O)C(=O)O" # _pdbx_chem_comp_identifier.comp_id UTR _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[[(2~{R},3~{S},4~{R},5~{R})-5-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy]prop-1-ynyl]-6-azanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylcarbamoyl]benzoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UTR "Create component" 2023-09-07 PDBE UTR "Initial release" 2025-03-19 RCSB #