data_UVC
#
_chem_comp.id UVC
_chem_comp.name "URIDINE-2',3'-VANADATE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H12 N2 O9 V"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 343.141
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code UVC
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1RUV
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
UVC N1 N1 N 0 1 N N N 31.798 13.516 9.280 -0.175 0.569 -2.146 N1 UVC 1
UVC C2 C2 C 0 1 N N N 31.400 13.945 10.654 0.008 -0.691 -2.580 C2 UVC 2
UVC N3 N3 N 0 1 N N N 32.401 13.643 11.482 -0.456 -1.083 -3.781 N3 UVC 3
UVC C4 C4 C 0 1 N N N 33.589 13.097 11.375 -1.108 -0.210 -4.576 C4 UVC 4
UVC C5 C5 C 0 1 N N N 33.920 12.723 9.968 -1.303 1.120 -4.133 C5 UVC 5
UVC C6 C6 C 0 1 N N N 32.956 12.969 9.071 -0.831 1.485 -2.922 C6 UVC 6
UVC O2 O2 O 0 1 N N N 30.383 14.405 10.756 0.594 -1.489 -1.874 O2 UVC 7
UVC O4 O4 O 0 1 N N N 34.430 12.914 12.306 -1.524 -0.563 -5.664 O4 UVC 8
UVC "C1'" C1* C 0 1 N N R 30.726 13.809 8.308 0.337 0.965 -0.832 "C1'" UVC 9
UVC "C2'" C2* C 0 1 N N R 30.860 15.233 7.759 -0.298 0.093 0.265 "C2'" UVC 10
UVC "O2'" O2* O 0 1 N N N 29.533 15.467 7.408 -0.914 0.951 1.241 "O2'" UVC 11
UVC "C3'" C3* C 0 1 N N R 31.710 14.972 6.559 0.901 -0.576 0.964 "C3'" UVC 12
UVC "C4'" C4* C 0 1 N N R 31.362 13.617 6.044 2.079 0.337 0.563 "C4'" UVC 13
UVC "O3'" O3* O 0 1 N N N 31.249 15.947 5.674 0.727 -0.593 2.369 "O3'" UVC 14
UVC "O4'" O4* O 0 1 N N N 30.989 12.783 7.243 1.758 0.751 -0.780 "O4'" UVC 15
UVC "C5'" C5* C 0 1 N N N 32.253 12.619 5.261 3.388 -0.449 0.576 "C5'" UVC 16
UVC "O5'" O5* O 0 1 N N N 33.474 12.659 5.929 4.458 0.398 0.155 "O5'" UVC 17
UVC V V V 0 1 N N N 29.586 16.973 6.098 -0.977 -0.045 2.792 V UVC 18
UVC O1V O1V O 0 1 N N N 29.579 18.447 7.093 -0.946 -1.063 4.323 O1V UVC 19
UVC O2V O2V O 0 1 N N N 28.307 16.864 5.708 -2.224 -0.854 2.250 O2V UVC 20
UVC O3V O3V O 0 1 N N N 30.360 17.782 4.547 -1.231 1.480 3.787 O3V UVC 21
UVC HN3 HN3 H 0 1 N N N 32.207 13.895 12.451 -0.318 -1.996 -4.077 HN3 UVC 22
UVC H5 H5 H 0 1 N N N 34.857 12.274 9.598 -1.823 1.833 -4.755 H5 UVC 23
UVC H6 H6 H 0 1 N N N 33.140 12.683 8.021 -0.970 2.495 -2.567 H6 UVC 24
UVC "H1'" H1* H 0 1 N N N 29.696 13.759 8.733 0.116 2.016 -0.650 "H1'" UVC 25
UVC "H2'" H2* H 0 1 N N N 31.277 16.062 8.376 -0.986 -0.630 -0.139 "H2'" UVC 26
UVC "H3'" H3* H 0 1 N N N 32.811 15.006 6.730 1.053 -1.585 0.586 "H3'" UVC 27
UVC "H4'" H4* H 0 1 N N N 30.663 13.975 5.252 2.141 1.195 1.224 "H4'" UVC 28
UVC "H5'1" 1H5* H 0 0 N N N 31.818 11.597 5.162 3.308 -1.298 -0.103 "H5'1" UVC 29
UVC "H5'2" 2H5* H 0 0 N N N 32.322 12.827 4.167 3.585 -0.809 1.586 "H5'2" UVC 30
UVC "HO5'" *HO5 H 0 0 N N N 34.020 12.047 5.449 5.264 -0.135 0.178 "HO5'" UVC 31
UVC HOV1 1HOV H 0 0 N N N 29.604 19.163 6.469 -0.814 -1.980 4.047 HOV1 UVC 32
UVC HOV3 3HOV H 0 0 N N N 30.385 18.498 3.923 -1.300 1.203 4.711 HOV3 UVC 33
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
UVC N1 C2 SING N N 1
UVC N1 C6 SING N N 2
UVC N1 "C1'" SING N N 3
UVC C2 N3 SING N N 4
UVC C2 O2 DOUB N N 5
UVC N3 C4 SING N N 6
UVC N3 HN3 SING N N 7
UVC C4 C5 SING N N 8
UVC C4 O4 DOUB N N 9
UVC C5 C6 DOUB N N 10
UVC C5 H5 SING N N 11
UVC C6 H6 SING N N 12
UVC "C1'" "C2'" SING N N 13
UVC "C1'" "O4'" SING N N 14
UVC "C1'" "H1'" SING N N 15
UVC "C2'" "O2'" SING N N 16
UVC "C2'" "C3'" SING N N 17
UVC "C2'" "H2'" SING N N 18
UVC "O2'" V SING N N 19
UVC "C3'" "C4'" SING N N 20
UVC "C3'" "O3'" SING N N 21
UVC "C3'" "H3'" SING N N 22
UVC "C4'" "O4'" SING N N 23
UVC "C4'" "C5'" SING N N 24
UVC "C4'" "H4'" SING N N 25
UVC "O3'" V SING N N 26
UVC "C5'" "O5'" SING N N 27
UVC "C5'" "H5'1" SING N N 28
UVC "C5'" "H5'2" SING N N 29
UVC "O5'" "HO5'" SING N N 30
UVC V O1V SING N N 31
UVC V O2V DOUB N N 32
UVC V O3V SING N N 33
UVC O1V HOV1 SING N N 34
UVC O3V HOV3 SING N N 35
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
UVC SMILES ACDLabs 10.04 "O=[V]1(OC2C(OC(C2O1)CO)N3C=CC(=O)NC3=O)(O)O"
UVC SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1O[C@H]([C@@H]2O[V](O)(O)(=O)O[C@H]12)N3C=CC(=O)NC3=O"
UVC SMILES CACTVS 3.341 "OC[CH]1O[CH]([CH]2O[V](O)(O)(=O)O[CH]12)N3C=CC(=O)NC3=O"
UVC SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)NC1=O)[C@H]2[C@H]3[C@@H]([C@H](O2)CO)O[V](=O)(O3)(O)O"
UVC SMILES "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)NC1=O)C2C3C(C(O2)CO)O[V](=O)(O3)(O)O"
UVC InChI InChI 1.03 "InChI=1S/C9H10N2O6.2H2O.O.V/c12-3-4-6(14)7(15)8(17-4)11-2-1-5(13)10-9(11)16;;;;/h1-2,4,6-8,12H,3H2,(H,10,13,16);2*1H2;;/q-2;;;;+4/p-2/t4-,6-,7-,8-;;;;/m1..../s1"
UVC InChIKey InChI 1.03 JSPAHXDHRUTBDP-ODQFIEKDSA-L
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
UVC "SYSTEMATIC NAME" ACDLabs 10.04 "dihydroxy(oxo)[uridinato(2-)-kappa~2~O~2'~,O~3'~]vanadium"
UVC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "1-[(1R,5R,6R,8R)-3,3-dihydroxy-6-(hydroxymethyl)-3-oxo-2,4,7-trioxa-3$l^{6}-vanadabicyclo[3.3.0]octan-8-yl]pyrimidine-2,4-dione"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
UVC "Create component" 1999-07-08 RCSB
UVC "Modify descriptor" 2011-06-04 RCSB
#