data_UX4
#
_chem_comp.id UX4
_chem_comp.name
;ethyl 4-[(8R)-3,8-dimethyl-4-oxo-4,6,7,8,9,10-hexahydrothieno[2',3':4,5]pyrimido[1,2-a]azepin-2-yl]carbamoylpiperazine-1-carboxylate
;
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H29 N5 O4 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-12-07
_chem_comp.pdbx_modified_date 2018-11-30
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 447.551
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code UX4
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5YX1
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
UX4 O29 O1 O 0 1 N N N -8.354 -7.120 9.749 7.265 -1.721 -0.630 O29 UX4 1
UX4 C27 C1 C 0 1 N N N -8.552 -6.670 8.626 6.885 -0.567 -0.619 C27 UX4 2
UX4 O28 O2 O 0 1 N N N -7.456 -6.063 7.913 7.781 0.438 -0.658 O28 UX4 3
UX4 C30 C2 C 0 1 N N N -6.114 -6.100 8.411 9.184 0.068 -0.711 C30 UX4 4
UX4 C31 C3 C 0 1 N N N -5.771 -4.765 9.009 10.044 1.333 -0.749 C31 UX4 5
UX4 N23 N1 N 0 1 N N N -9.808 -6.579 8.082 5.566 -0.292 -0.574 N23 UX4 6
UX4 C22 C4 C 0 1 N N N -10.804 -7.534 8.585 4.577 -1.378 -0.538 C22 UX4 7
UX4 C26 C5 C 0 1 N N N -12.170 -6.894 8.283 3.676 -1.179 0.688 C26 UX4 8
UX4 C24 C6 C 0 1 N N N -9.872 -6.515 6.604 5.092 1.099 -0.555 C24 UX4 9
UX4 C25 C7 C 0 1 N N N -11.214 -5.836 6.311 4.195 1.294 0.674 C25 UX4 10
UX4 N20 N2 N 0 1 N N N -12.294 -6.751 6.829 3.202 0.211 0.701 N20 UX4 11
UX4 C19 C8 C 0 1 N N N -13.610 -6.544 6.433 1.884 0.491 0.749 C19 UX4 12
UX4 O21 O3 O 0 1 N N N -14.546 -6.971 7.138 1.510 1.642 0.864 O21 UX4 13
UX4 N18 N3 N 0 1 N N N -13.811 -5.977 5.251 0.981 -0.506 0.671 N18 UX4 14
UX4 C7 C9 C 0 1 Y N N -15.028 -5.571 4.821 -0.382 -0.210 0.612 C7 UX4 15
UX4 C6 C10 C 0 1 Y N N -15.279 -5.205 3.405 -1.346 -1.121 0.539 C6 UX4 16
UX4 C15 C11 C 0 1 N N N -14.283 -5.154 2.296 -1.066 -2.602 0.509 C15 UX4 17
UX4 C2 C12 C 0 1 Y N N -16.729 -4.880 3.295 -2.689 -0.577 0.490 C2 UX4 18
UX4 C1 C13 C 0 1 N N N -17.452 -4.435 2.094 -3.949 -1.249 0.409 C1 UX4 19
UX4 O16 O4 O 0 1 N N N -16.819 -4.215 1.083 -4.003 -2.465 0.356 O16 UX4 20
UX4 S8 S1 S 0 1 Y N N -16.437 -5.535 5.842 -1.046 1.413 0.634 S8 UX4 21
UX4 C9 C14 C 0 1 Y N N -17.448 -5.028 4.557 -2.696 0.813 0.531 C9 UX4 22
UX4 N3 N4 N 0 1 N N N -18.754 -4.775 4.628 -3.872 1.477 0.497 N3 UX4 23
UX4 C4 C15 C 0 1 N N N -19.487 -4.272 3.475 -5.009 0.853 0.436 C4 UX4 24
UX4 N5 N5 N 0 1 N N N -18.829 -4.291 2.119 -5.071 -0.512 0.394 N5 UX4 25
UX4 C11 C16 C 0 1 N N N -20.763 -5.117 3.439 -6.309 1.623 0.414 C11 UX4 26
UX4 C12 C17 C 0 1 N N N -21.706 -4.839 2.267 -6.904 1.557 -0.992 C12 UX4 27
UX4 C13 C18 C 0 1 N N R -21.774 -3.398 1.744 -7.776 0.326 -1.159 C13 UX4 28
UX4 C17 C19 C 0 1 N N N -21.956 -2.340 2.843 -8.462 0.386 -2.526 C17 UX4 29
UX4 C14 C20 C 0 1 N N N -20.602 -3.113 0.790 -6.978 -0.962 -1.064 C14 UX4 30
UX4 C10 C21 C 0 1 N N N -19.207 -3.046 1.401 -6.394 -1.148 0.336 C10 UX4 31
UX4 H1 H1 H 0 1 N N N -6.029 -6.881 9.181 9.439 -0.518 0.172 H1 UX4 32
UX4 H2 H2 H 0 1 N N N -5.421 -6.322 7.586 9.370 -0.525 -1.607 H2 UX4 33
UX4 H3 H3 H 0 1 N N N -4.741 -4.789 9.393 11.097 1.055 -0.790 H3 UX4 34
UX4 H4 H4 H 0 1 N N N -5.857 -3.985 8.238 9.788 1.919 -1.632 H4 UX4 35
UX4 H5 H5 H 0 1 N N N -6.465 -4.544 9.834 9.858 1.926 0.146 H5 UX4 36
UX4 H6 H6 H 0 1 N N N -10.708 -8.499 8.067 3.972 -1.353 -1.444 H6 UX4 37
UX4 H7 H7 H 0 1 N N N -10.680 -7.685 9.668 5.089 -2.338 -0.467 H7 UX4 38
UX4 H8 H8 H 0 1 N N N -12.233 -5.906 8.762 2.824 -1.856 0.628 H8 UX4 39
UX4 H9 H9 H 0 1 N N N -12.976 -7.538 8.664 4.243 -1.384 1.596 H9 UX4 40
UX4 H10 H10 H 0 1 N N N -9.843 -7.525 6.169 5.945 1.775 -0.496 H10 UX4 41
UX4 H11 H11 H 0 1 N N N -9.038 -5.919 6.204 4.524 1.304 -1.462 H11 UX4 42
UX4 H12 H12 H 0 1 N N N -11.265 -4.864 6.823 4.803 1.266 1.579 H12 UX4 43
UX4 H13 H13 H 0 1 N N N -11.333 -5.687 5.228 3.683 2.253 0.604 H13 UX4 44
UX4 H14 H14 H 0 1 N N N -13.025 -5.843 4.648 1.277 -1.430 0.655 H14 UX4 45
UX4 H15 H15 H 0 1 N N N -13.837 -4.149 2.249 -1.048 -2.989 1.528 H15 UX4 46
UX4 H16 H16 H 0 1 N N N -13.493 -5.897 2.478 -1.847 -3.108 -0.058 H16 UX4 47
UX4 H17 H17 H 0 1 N N N -14.784 -5.378 1.343 -0.100 -2.779 0.036 H17 UX4 48
UX4 H20 H20 H 0 1 N N N -21.318 -4.933 4.371 -7.006 1.182 1.126 H20 UX4 49
UX4 H21 H21 H 0 1 N N N -20.467 -6.175 3.392 -6.122 2.663 0.683 H21 UX4 50
UX4 H22 H22 H 0 1 N N N -22.720 -5.123 2.584 -7.505 2.449 -1.167 H22 UX4 51
UX4 H23 H23 H 0 1 N N N -21.391 -5.480 1.430 -6.094 1.523 -1.721 H23 UX4 52
UX4 H24 H24 H 0 1 N N N -22.682 -3.346 1.126 -8.540 0.325 -0.381 H24 UX4 53
UX4 H25 H25 H 0 1 N N N -22.810 -2.615 3.480 -7.706 0.411 -3.310 H25 UX4 54
UX4 H26 H26 H 0 1 N N N -21.044 -2.287 3.456 -9.091 -0.495 -2.655 H26 UX4 55
UX4 H27 H27 H 0 1 N N N -22.144 -1.360 2.381 -9.077 1.284 -2.585 H27 UX4 56
UX4 H28 H28 H 0 1 N N N -20.798 -2.145 0.305 -7.630 -1.805 -1.294 H28 UX4 57
UX4 H29 H29 H 0 1 N N N -20.593 -3.908 0.030 -6.165 -0.933 -1.790 H29 UX4 58
UX4 H30 H30 H 0 1 N N N -18.479 -2.871 0.595 -6.296 -2.211 0.552 H30 UX4 59
UX4 H31 H31 H 0 1 N N N -19.175 -2.207 2.112 -7.053 -0.684 1.069 H31 UX4 60
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
UX4 C14 C10 SING N N 1
UX4 C14 C13 SING N N 2
UX4 O16 C1 DOUB N N 3
UX4 C10 N5 SING N N 4
UX4 C13 C12 SING N N 5
UX4 C13 C17 SING N N 6
UX4 C1 N5 SING N N 7
UX4 C1 C2 SING N N 8
UX4 N5 C4 SING N N 9
UX4 C12 C11 SING N N 10
UX4 C15 C6 SING N N 11
UX4 C2 C6 SING Y N 12
UX4 C2 C9 DOUB Y N 13
UX4 C6 C7 DOUB Y N 14
UX4 C11 C4 SING N N 15
UX4 C4 N3 DOUB N N 16
UX4 C9 N3 SING N N 17
UX4 C9 S8 SING Y N 18
UX4 C7 N18 SING N N 19
UX4 C7 S8 SING Y N 20
UX4 N18 C19 SING N N 21
UX4 C25 C24 SING N N 22
UX4 C25 N20 SING N N 23
UX4 C19 N20 SING N N 24
UX4 C19 O21 DOUB N N 25
UX4 C24 N23 SING N N 26
UX4 N20 C26 SING N N 27
UX4 O28 C30 SING N N 28
UX4 O28 C27 SING N N 29
UX4 N23 C22 SING N N 30
UX4 N23 C27 SING N N 31
UX4 C26 C22 SING N N 32
UX4 C30 C31 SING N N 33
UX4 C27 O29 DOUB N N 34
UX4 C30 H1 SING N N 35
UX4 C30 H2 SING N N 36
UX4 C31 H3 SING N N 37
UX4 C31 H4 SING N N 38
UX4 C31 H5 SING N N 39
UX4 C22 H6 SING N N 40
UX4 C22 H7 SING N N 41
UX4 C26 H8 SING N N 42
UX4 C26 H9 SING N N 43
UX4 C24 H10 SING N N 44
UX4 C24 H11 SING N N 45
UX4 C25 H12 SING N N 46
UX4 C25 H13 SING N N 47
UX4 N18 H14 SING N N 48
UX4 C15 H15 SING N N 49
UX4 C15 H16 SING N N 50
UX4 C15 H17 SING N N 51
UX4 C11 H20 SING N N 52
UX4 C11 H21 SING N N 53
UX4 C12 H22 SING N N 54
UX4 C12 H23 SING N N 55
UX4 C13 H24 SING N N 56
UX4 C17 H25 SING N N 57
UX4 C17 H26 SING N N 58
UX4 C17 H27 SING N N 59
UX4 C14 H28 SING N N 60
UX4 C14 H29 SING N N 61
UX4 C10 H30 SING N N 62
UX4 C10 H31 SING N N 63
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
UX4 SMILES ACDLabs 12.01 "O=C(OCC)N1CCN(CC1)C(=O)Nc2sc3c(c2C)C(N4C(=N3)CCC(C)CC4)=O"
UX4 InChI InChI 1.03 "InChI=1S/C21H29N5O4S/c1-4-30-21(29)25-11-9-24(10-12-25)20(28)23-17-14(3)16-18(31-17)22-15-6-5-13(2)7-8-26(15)19(16)27/h13H,4-12H2,1-3H3,(H,23,28)/t13-/m1/s1"
UX4 InChIKey InChI 1.03 XBHQVTSPEFNYKC-CYBMUJFWSA-N
UX4 SMILES_CANONICAL CACTVS 3.385 "CCOC(=O)N1CCN(CC1)C(=O)Nc2sc3N=C4CC[C@@H](C)CCN4C(=O)c3c2C"
UX4 SMILES CACTVS 3.385 "CCOC(=O)N1CCN(CC1)C(=O)Nc2sc3N=C4CC[CH](C)CCN4C(=O)c3c2C"
UX4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCOC(=O)N1CCN(CC1)C(=O)Nc2c(c3c(s2)N=C4CC[C@H](CCN4C3=O)C)C"
UX4 SMILES "OpenEye OEToolkits" 2.0.6 "CCOC(=O)N1CCN(CC1)C(=O)Nc2c(c3c(s2)N=C4CCC(CCN4C3=O)C)C"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
UX4 "SYSTEMATIC NAME" ACDLabs 12.01
;ethyl 4-{[(8R)-3,8-dimethyl-4-oxo-4,6,7,8,9,10-hexahydrothieno[2',3':4,5]pyrimido[1,2-a]azepin-2-yl]carbamoyl}piperazine-1-carboxylate
;
UX4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "ethyl 4-[[(12~{R})-4,12-dimethyl-2-oxidanylidene-6-thia-1,8-diazatricyclo[7.5.0.0^{3,7}]tetradeca-3(7),4,8-trien-5-yl]carbamoyl]piperazine-1-carboxylate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
UX4 "Create component" 2017-12-07 PDBJ
UX4 "Initial release" 2018-12-05 RCSB
#