data_UX6 # _chem_comp.id UX6 _chem_comp.name "~{N}-[[(2~{R},3~{S},4~{R},5~{R})-5-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy]prop-1-ynyl]-6-azanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-4-carbamimidamido-butanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H36 N14 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-07 _chem_comp.pdbx_modified_date 2025-03-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 696.674 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UX6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QGJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UX6 N1 N1 N 0 1 N N N N N N 10.907 7.442 9.494 -3.560 -6.745 -3.022 N1 UX6 1 UX6 C7 C1 C 0 1 N N R N N N 19.458 9.453 14.120 5.613 -0.282 -0.169 C7 UX6 2 UX6 C8 C2 C 0 1 N N R N N N 18.716 9.525 15.447 5.933 -0.371 1.345 C8 UX6 3 UX6 N2 N2 N 0 1 N N N N N N 12.338 5.538 9.397 -2.863 -6.110 -0.903 N2 UX6 4 UX6 C9 C3 C 0 1 N N S N N N 18.427 8.043 15.670 5.666 -1.866 1.646 C9 UX6 5 UX6 O1 O1 O 0 1 N N N N N N 18.775 8.476 13.358 4.490 -1.176 -0.329 O1 UX6 6 UX6 C1 C4 C 0 1 N N N N N N 13.733 5.159 9.590 -1.604 -5.596 -1.447 C1 UX6 7 UX6 O5 O2 O 0 1 N N N N N N 16.073 8.518 9.944 -2.856 1.821 1.207 O5 UX6 8 UX6 C5 C5 C 0 1 N N N N N N 16.662 7.431 13.886 3.432 -2.861 1.065 C5 UX6 9 UX6 C6 C6 C 0 1 N N R N N N 18.129 7.542 14.255 4.747 -2.324 0.497 C6 UX6 10 UX6 N3 N3 N 0 1 N N N N N N 16.451 6.735 12.624 2.615 -3.404 -0.024 N3 UX6 11 UX6 C4 C7 C 0 1 N N N N N N 16.225 5.425 12.542 1.405 -3.935 0.242 C4 UX6 12 UX6 O4 O3 O 0 1 N N N N N N 14.414 9.392 12.031 -0.153 0.960 1.815 O4 UX6 13 UX6 C3 C8 C 0 1 N N N N N N 15.661 4.933 11.229 0.565 -4.492 -0.878 C3 UX6 14 UX6 O3 O4 O 0 1 N N N N N N 19.574 7.390 16.198 6.889 -2.605 1.633 O3 UX6 15 UX6 C2 C9 C 0 1 N N N N N N 14.183 5.267 11.042 -0.750 -5.029 -0.310 C2 UX6 16 UX6 N4 N4 N 0 1 Y N N N N N 19.550 10.696 13.369 5.243 1.087 -0.538 N4 UX6 17 UX6 N N5 N 0 1 N N N N N N 12.836 7.413 8.029 -4.978 -7.153 -1.232 N UX6 18 UX6 C C10 C 0 1 N N N N N N 11.965 6.864 8.988 -3.796 -6.671 -1.742 C UX6 19 UX6 O O5 O 0 1 N N N N N N 16.466 4.651 13.465 0.993 -3.964 1.382 O UX6 20 UX6 C10 C11 C 0 1 Y N N N N N 18.523 11.512 12.933 4.049 1.708 -0.268 C10 UX6 21 UX6 C11 C12 C 0 1 Y N N N N N 20.328 12.497 12.364 5.262 3.160 -1.340 C11 UX6 22 UX6 C12 C13 C 0 1 Y N N N N N 21.350 13.310 11.838 5.838 4.259 -2.003 C12 UX6 23 UX6 C13 C14 C 0 1 Y N N N N N 22.851 11.731 12.615 7.751 3.013 -2.338 C13 UX6 24 UX6 C14 C15 C 0 1 Y N N N N N 20.719 11.325 12.990 6.029 1.987 -1.213 C14 UX6 25 UX6 C15 C16 C 0 1 N N N N N N 17.159 11.132 13.042 2.949 1.114 0.431 C15 UX6 26 UX6 C16 C17 C 0 1 N N N N N N 16.006 10.834 13.077 2.047 0.628 1.003 C16 UX6 27 UX6 C17 C18 C 0 1 N N N N N N 14.597 10.448 12.968 0.916 0.017 1.721 C17 UX6 28 UX6 C18 C19 C 0 1 N N N N N N 14.233 9.882 10.699 -1.307 0.465 2.498 C18 UX6 29 UX6 C19 C20 C 0 1 N N R N N N 15.552 9.860 9.965 -2.382 1.553 2.538 C19 UX6 30 UX6 C20 C21 C 0 1 N N R N N N 17.050 8.451 8.919 -4.259 2.145 1.317 C20 UX6 31 UX6 C21 C22 C 0 1 N N R N N N 16.768 9.592 7.926 -4.779 1.143 2.379 C21 UX6 32 UX6 C22 C23 C 0 1 N N S N N N 15.506 10.256 8.492 -3.588 1.067 3.365 C22 UX6 33 UX6 C23 C24 C 0 1 Y N N N N N 16.010 6.579 7.560 -4.532 1.109 -0.968 C23 UX6 34 UX6 C24 C25 C 0 1 Y N N N N N 17.550 5.119 7.576 -6.366 2.036 -1.658 C24 UX6 35 UX6 C25 C26 C 0 1 Y N N N N N 18.412 4.015 7.428 -7.517 2.490 -2.324 C25 UX6 36 UX6 C26 C27 C 0 1 Y N N N N N 19.930 5.166 8.739 -8.010 3.812 -0.497 C26 UX6 37 UX6 C27 C28 C 0 1 Y N N N N N 18.016 6.181 8.334 -6.102 2.538 -0.373 C27 UX6 38 UX6 N10 N6 N 0 1 Y N N N N N 16.277 5.384 7.093 -5.373 1.165 -1.959 N10 UX6 39 UX6 N11 N7 N 0 1 N N N N N N 18.110 2.924 6.714 -7.830 2.031 -3.592 N11 UX6 40 UX6 N12 N8 N 0 1 Y N N N N N 19.617 4.075 8.035 -8.300 3.370 -1.707 N12 UX6 41 UX6 N13 N9 N 0 1 Y N N N N N 19.202 6.265 8.946 -6.943 3.416 0.163 N13 UX6 42 UX6 N5 N10 N 0 1 Y N N N N N 18.942 12.615 12.342 4.070 2.930 -0.747 N5 UX6 43 UX6 N6 N11 N 0 1 N N N N N N 21.129 14.450 11.172 5.133 5.440 -2.159 N6 UX6 44 UX6 N7 N12 N 0 1 Y N N N N N 22.624 12.889 11.988 7.073 4.137 -2.476 N7 UX6 45 UX6 N8 N13 N 0 1 Y N N N N N 21.971 10.882 13.149 7.256 1.959 -1.722 N8 UX6 46 UX6 N9 N14 N 0 1 Y N N N N N 17.017 7.123 8.315 -4.938 1.938 0.036 N9 UX6 47 UX6 O2 O6 O 0 1 N N N N N N 19.565 10.048 16.461 7.299 -0.036 1.599 O2 UX6 48 UX6 O6 O7 O 0 1 N N N N N N 17.869 10.493 7.888 -5.947 1.650 3.028 O6 UX6 49 UX6 O7 O8 O 0 1 N N N N N N 15.550 11.667 8.291 -3.808 1.929 4.483 O7 UX6 50 UX6 H6 H1 H 0 1 N N N N N N 10.441 6.856 10.157 -2.727 -6.404 -3.382 H6 UX6 51 UX6 H1 H2 H 0 1 N N N N N N 20.477 9.096 14.328 6.462 -0.622 -0.761 H1 UX6 52 UX6 H17 H3 H 0 1 N N N N N N 17.781 10.096 15.345 5.263 0.267 1.923 H17 UX6 53 UX6 H7 H4 H 0 1 N N N N N N 11.622 4.857 9.553 -3.038 -6.055 0.049 H7 UX6 54 UX6 H19 H5 H 0 1 N N N N N N 17.546 7.916 16.316 5.161 -1.979 2.606 H19 UX6 55 UX6 H9 H6 H 0 1 N N N N N N 13.863 4.118 9.259 -1.063 -6.404 -1.939 H9 UX6 56 UX6 H8 H7 H 0 1 N N N N N N 14.364 5.820 8.977 -1.815 -4.808 -2.170 H8 UX6 57 UX6 H15 H8 H 0 1 N N N N N N 16.242 8.444 13.803 3.643 -3.649 1.788 H15 UX6 58 UX6 H16 H9 H 0 1 N N N N N N 16.139 6.881 14.683 2.891 -2.053 1.557 H16 UX6 59 UX6 H H10 H 0 1 N N N N N N 18.590 6.550 14.139 5.243 -3.100 -0.087 H UX6 60 UX6 H14 H11 H 0 1 N N N N N N 16.477 7.267 11.778 2.945 -3.380 -0.936 H14 UX6 61 UX6 H13 H12 H 0 1 N N N N N N 15.780 3.840 11.186 0.354 -3.704 -1.601 H13 UX6 62 UX6 H12 H13 H 0 1 N N N N N N 16.230 5.396 10.409 1.105 -5.301 -1.370 H12 UX6 63 UX6 H20 H14 H 0 1 N N N N N N 19.381 6.469 16.332 7.529 -2.318 2.299 H20 UX6 64 UX6 H10 H15 H 0 1 N N N N N N 14.009 6.296 11.389 -1.291 -4.221 0.182 H10 UX6 65 UX6 H11 H16 H 0 1 N N N N N N 13.586 4.570 11.648 -0.539 -5.818 0.413 H11 UX6 66 UX6 H4 H17 H 0 1 N N N N N N 13.619 6.883 7.704 -5.636 -7.549 -1.824 H4 UX6 67 UX6 H5 H18 H 0 1 N N N N N N 12.672 8.333 7.673 -5.153 -7.098 -0.280 H5 UX6 68 UX6 H23 H19 H 0 1 N N N N N N 23.888 11.443 12.701 8.752 2.956 -2.740 H23 UX6 69 UX6 H24 H20 H 0 1 N N N N N N 14.241 10.116 13.954 1.235 -0.271 2.723 H24 UX6 70 UX6 H25 H21 H 0 1 N N N N N N 14.012 11.320 12.641 0.576 -0.866 1.180 H25 UX6 71 UX6 H27 H22 H 0 1 N N N N N N 13.510 9.244 10.170 -1.693 -0.409 1.972 H27 UX6 72 UX6 H26 H23 H 0 1 N N N N N N 13.853 10.914 10.737 -1.034 0.186 3.516 H26 UX6 73 UX6 H2 H24 H 0 1 N N N N N N 16.258 10.525 10.485 -1.972 2.463 2.975 H2 UX6 74 UX6 H3 H25 H 0 1 N N N N N N 18.047 8.620 9.352 -4.390 3.171 1.661 H3 UX6 75 UX6 H28 H26 H 0 1 N N N N N N 16.555 9.175 6.931 -4.977 0.169 1.931 H28 UX6 76 UX6 H30 H27 H 0 1 N N N N N N 14.616 9.817 8.019 -3.434 0.041 3.698 H30 UX6 77 UX6 H32 H28 H 0 1 N N N N N N 15.079 7.090 7.367 -3.645 0.492 -0.942 H32 UX6 78 UX6 H35 H29 H 0 1 N N N N N N 20.905 5.158 9.204 -8.674 4.527 -0.033 H35 UX6 79 UX6 H33 H30 H 0 1 N N N N N N 18.876 2.282 6.745 -7.251 1.389 -4.031 H33 UX6 80 UX6 H34 H31 H 0 1 N N N N N N 17.295 2.489 7.098 -8.627 2.352 -4.041 H34 UX6 81 UX6 H21 H32 H 0 1 N N N N N N 22.001 14.835 10.871 4.232 5.517 -1.809 H21 UX6 82 UX6 H22 H33 H 0 1 N N N N N N 20.554 14.264 10.375 5.541 6.191 -2.618 H22 UX6 83 UX6 H18 H34 H 0 1 N N N N N N 19.090 10.088 17.283 7.547 -0.077 2.532 H18 UX6 84 UX6 H29 H35 H 0 1 N N N N N N 17.685 11.193 7.273 -6.311 1.058 3.702 H29 UX6 85 UX6 H31 H36 H 0 1 N N N N N N 14.763 12.063 8.646 -4.590 1.704 5.005 H31 UX6 86 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UX6 N C SING N N 1 UX6 N1 C DOUB N N 2 UX6 C N2 SING N N 3 UX6 N2 C1 SING N N 4 UX6 C1 C2 SING N N 5 UX6 C2 C3 SING N N 6 UX6 C3 C4 SING N N 7 UX6 C4 O DOUB N N 8 UX6 N3 C4 SING N N 9 UX6 C5 N3 SING N N 10 UX6 C6 C5 SING N N 11 UX6 C6 O1 SING N N 12 UX6 O1 C7 SING N N 13 UX6 C7 C8 SING N N 14 UX6 O2 C8 SING N N 15 UX6 C8 C9 SING N N 16 UX6 C9 C6 SING N N 17 UX6 O3 C9 SING N N 18 UX6 N4 C7 SING N N 19 UX6 N4 C10 SING Y N 20 UX6 C10 N5 DOUB Y N 21 UX6 N5 C11 SING Y N 22 UX6 C11 C12 DOUB Y N 23 UX6 N6 C12 SING N N 24 UX6 C12 N7 SING Y N 25 UX6 N7 C13 DOUB Y N 26 UX6 C13 N8 SING Y N 27 UX6 N8 C14 DOUB Y N 28 UX6 C14 N4 SING Y N 29 UX6 C11 C14 SING Y N 30 UX6 C15 C10 SING N N 31 UX6 C16 C15 TRIP N N 32 UX6 C17 C16 SING N N 33 UX6 O4 C17 SING N N 34 UX6 C18 O4 SING N N 35 UX6 C19 C18 SING N N 36 UX6 C19 O5 SING N N 37 UX6 O5 C20 SING N N 38 UX6 C20 C21 SING N N 39 UX6 O6 C21 SING N N 40 UX6 C21 C22 SING N N 41 UX6 C22 C19 SING N N 42 UX6 O7 C22 SING N N 43 UX6 N9 C20 SING N N 44 UX6 N9 C23 SING Y N 45 UX6 C23 N10 DOUB Y N 46 UX6 N10 C24 SING Y N 47 UX6 C24 C25 DOUB Y N 48 UX6 N11 C25 SING N N 49 UX6 C25 N12 SING Y N 50 UX6 N12 C26 DOUB Y N 51 UX6 C26 N13 SING Y N 52 UX6 N13 C27 DOUB Y N 53 UX6 C27 N9 SING Y N 54 UX6 C24 C27 SING Y N 55 UX6 N1 H6 SING N N 56 UX6 C7 H1 SING N N 57 UX6 C8 H17 SING N N 58 UX6 N2 H7 SING N N 59 UX6 C9 H19 SING N N 60 UX6 C1 H9 SING N N 61 UX6 C1 H8 SING N N 62 UX6 C5 H15 SING N N 63 UX6 C5 H16 SING N N 64 UX6 C6 H SING N N 65 UX6 N3 H14 SING N N 66 UX6 C3 H13 SING N N 67 UX6 C3 H12 SING N N 68 UX6 O3 H20 SING N N 69 UX6 C2 H10 SING N N 70 UX6 C2 H11 SING N N 71 UX6 N H4 SING N N 72 UX6 N H5 SING N N 73 UX6 C13 H23 SING N N 74 UX6 C17 H24 SING N N 75 UX6 C17 H25 SING N N 76 UX6 C18 H27 SING N N 77 UX6 C18 H26 SING N N 78 UX6 C19 H2 SING N N 79 UX6 C20 H3 SING N N 80 UX6 C21 H28 SING N N 81 UX6 C22 H30 SING N N 82 UX6 C23 H32 SING N N 83 UX6 C26 H35 SING N N 84 UX6 N11 H33 SING N N 85 UX6 N11 H34 SING N N 86 UX6 N6 H21 SING N N 87 UX6 N6 H22 SING N N 88 UX6 O2 H18 SING N N 89 UX6 O6 H29 SING N N 90 UX6 O7 H31 SING N N 91 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UX6 InChI InChI 1.06 "InChI=1S/C28H36N14O8/c29-22-16-24(37-9-35-22)41(11-39-16)26-20(46)19(45)13(50-26)8-48-6-2-3-14-40-17-23(30)36-10-38-25(17)42(14)27-21(47)18(44)12(49-27)7-34-15(43)4-1-5-33-28(31)32/h9-13,18-21,26-27,44-47H,1,4-8H2,(H,34,43)(H2,29,35,37)(H2,30,36,38)(H4,31,32,33)/t12-,13+,18-,19-,20-,21-,26+,27+/m1/s1" UX6 InChIKey InChI 1.06 NNSXKLBHRBBEJB-IVGSDTCASA-N UX6 SMILES_CANONICAL CACTVS 3.385 "NC(=N)NCCCC(=O)NC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2c(nc3c(N)ncnc23)C#CCOC[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56" UX6 SMILES CACTVS 3.385 "NC(=N)NCCCC(=O)NC[CH]1O[CH]([CH](O)[CH]1O)n2c(nc3c(N)ncnc23)C#CCOC[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56" UX6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COCC#Cc4nc5c(ncnc5n4[C@H]6[C@@H]([C@@H]([C@H](O6)CNC(=O)CCCNC(=N)N)O)O)N)O)O)N" UX6 SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COCC#Cc4nc5c(ncnc5n4C6C(C(C(O6)CNC(=O)CCCNC(=N)N)O)O)N)O)O)N" # _pdbx_chem_comp_identifier.comp_id UX6 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[[(2~{R},3~{S},4~{R},5~{R})-5-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy]prop-1-ynyl]-6-azanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-4-carbamimidamido-butanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UX6 "Create component" 2023-09-07 PDBE UX6 "Initial release" 2025-03-19 RCSB #