data_UXX # _chem_comp.id UXX _chem_comp.name "1-[[(2~{R},3~{S},4~{R},5~{R})-5-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-pent-4-ynyl-amino]prop-1-ynyl]-6-azanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-3-ethyl-urea" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H39 N13 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-07 _chem_comp.pdbx_modified_date 2025-03-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 705.724 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UXX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QGE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UXX N1 N1 N 0 1 N N N N N N 16.462 6.983 12.576 3.803 3.189 0.215 N1 UXX 1 UXX C7 C1 C 0 1 N N S N N N 18.472 8.147 15.667 5.319 0.757 -2.283 C7 UXX 2 UXX C8 C2 C 0 1 Y N N N N N 18.637 11.503 12.748 2.959 -2.125 -0.076 C8 UXX 3 UXX N2 N2 N 0 1 Y N N N N N 19.629 10.691 13.260 4.327 -2.018 -0.050 N2 UXX 4 UXX C9 C3 C 0 1 Y N N N N N 20.485 12.432 12.223 3.698 -3.970 0.806 C9 UXX 5 UXX O1 O1 O 0 1 N N N N N N 18.824 8.484 13.337 4.564 0.362 -0.039 O1 UXX 6 UXX C1 C4 C 0 1 N N N N N N 15.562 3.999 10.669 1.702 5.851 1.632 C1 UXX 7 UXX O5 O2 O 0 1 N N N N N N 17.929 10.356 7.932 -6.022 1.244 -2.725 O5 UXX 8 UXX C5 C5 C 0 1 N N R N N N 19.498 9.490 14.067 5.118 -0.879 -0.525 C5 UXX 9 UXX C6 C6 C 0 1 N N R N N N 18.737 9.624 15.382 5.010 -0.745 -2.066 C6 UXX 10 UXX N3 N3 N 0 1 Y N N N N N 19.106 12.569 12.133 2.598 -3.281 0.432 N3 UXX 11 UXX C4 C7 C 0 1 N N R N N N 18.171 7.591 14.271 5.035 1.402 -0.913 C4 UXX 12 UXX O4 O3 O 0 1 N N N N N N 15.953 8.436 9.892 -3.195 0.131 -0.810 O4 UXX 13 UXX C3 C8 C 0 1 N N N N N N 16.700 7.515 13.909 3.963 2.484 -1.059 C3 UXX 14 UXX O3 O4 O 0 1 N N N N N N 19.634 7.532 16.210 6.688 0.940 -2.649 O3 UXX 15 UXX C2 C9 C 0 1 N N N N N N 16.214 5.677 12.350 2.939 4.219 0.312 C2 UXX 16 UXX N4 N4 N 0 1 N N N N N N 21.384 14.406 11.161 2.859 -6.059 1.712 N4 UXX 17 UXX N N5 N 0 1 N N N N N N 15.927 5.359 11.067 2.717 4.802 1.507 N UXX 18 UXX C C10 C 0 1 N N N N N N 16.758 3.150 10.352 1.583 6.272 3.098 C UXX 19 UXX O O5 O 0 1 N N N N N N 16.239 4.838 13.248 2.360 4.621 -0.678 O UXX 20 UXX C10 C11 C 0 1 Y N N N N N 21.544 13.221 11.742 3.920 -5.230 1.392 C10 UXX 21 UXX C11 C12 C 0 1 Y N N N N N 22.974 11.625 12.602 6.191 -4.821 1.331 C11 UXX 22 UXX C12 C13 C 0 1 Y N N N N N 20.823 11.276 12.899 4.818 -3.174 0.504 C12 UXX 23 UXX C13 C14 C 0 1 N N N N N N 17.270 11.155 12.819 2.062 -1.127 -0.574 C13 UXX 24 UXX C14 C15 C 0 1 N N N N N N 16.097 10.935 12.836 1.326 -0.308 -0.983 C14 UXX 25 UXX C15 C16 C 0 1 N N N N N N 14.675 10.563 12.921 0.404 0.718 -1.495 C15 UXX 26 UXX C16 C17 C 0 1 N N N N N N 12.975 9.005 12.501 0.241 1.880 0.622 C16 UXX 27 UXX C17 C18 C 0 1 N N N N N N 13.123 8.102 13.705 -0.575 1.885 1.917 C17 UXX 28 UXX C18 C19 C 0 1 N N N N N N 12.046 7.060 13.770 0.150 2.722 2.973 C18 UXX 29 UXX C19 C20 C 0 1 N N N N N N 12.217 5.998 12.778 -0.634 2.726 4.219 C19 UXX 30 UXX C20 C21 C 0 1 N N N N N N 12.382 5.171 11.961 -1.260 2.730 5.212 C20 UXX 31 UXX C21 C22 C 0 1 N N N N N N 14.155 9.890 10.599 -1.601 1.960 -0.947 C21 UXX 32 UXX C22 C23 C 0 1 N N R N N N 15.477 9.794 9.877 -2.572 1.060 -1.714 C22 UXX 33 UXX C23 C24 C 0 1 N N R N N N 17.021 8.366 8.968 -4.540 -0.083 -1.288 C23 UXX 34 UXX C24 C25 C 0 1 N N R N N N 16.806 9.483 7.929 -4.994 1.329 -1.736 C24 UXX 35 UXX C25 C26 C 0 1 N N S N N N 15.518 10.167 8.403 -3.693 1.911 -2.340 C25 UXX 36 UXX C26 C27 C 0 1 Y N N N N N 16.078 6.423 7.648 -5.206 -0.389 1.127 C26 UXX 37 UXX C27 C28 C 0 1 Y N N N N N 17.724 5.087 7.604 -7.019 -1.565 0.942 C27 UXX 38 UXX C28 C29 C 0 1 Y N N N N N 18.653 4.042 7.441 -8.196 -2.318 1.087 C28 UXX 39 UXX C29 C30 C 0 1 Y N N N N N 20.100 5.270 8.759 -8.308 -2.522 -1.210 C29 UXX 40 UXX C30 C31 C 0 1 Y N N N N N 18.127 6.168 8.365 -6.538 -1.328 -0.358 C30 UXX 41 UXX N10 N6 N 0 1 N N N N N N 18.412 2.935 6.736 -8.717 -2.582 2.341 N10 UXX 42 UXX N11 N7 N 0 1 Y N N N N N 19.853 4.168 8.046 -8.798 -2.770 -0.009 N11 UXX 43 UXX N12 N8 N 0 1 Y N N N N N 19.309 6.325 8.970 -7.208 -1.821 -1.394 N12 UXX 44 UXX N5 N9 N 0 1 Y N N N N N 22.801 12.772 11.942 5.172 -5.606 1.632 N5 UXX 45 UXX N6 N10 N 0 1 Y N N N N N 22.056 10.813 13.124 6.032 -3.635 0.781 N6 UXX 46 UXX N7 N11 N 0 1 N N N N N N 14.257 9.503 12.010 -0.496 1.150 -0.418 N7 UXX 47 UXX N8 N12 N 0 1 Y N N N N N 17.060 7.036 8.382 -5.397 -0.582 -0.209 N8 UXX 48 UXX N9 N13 N 0 1 Y N N N N N 16.423 5.261 7.153 -6.157 -0.969 1.800 N9 UXX 49 UXX O2 O6 O 0 1 N N N N N N 19.551 10.230 16.378 5.981 -1.565 -2.719 O2 UXX 50 UXX O6 O7 O 0 1 N N N N N N 15.545 11.579 8.218 -3.694 1.769 -3.762 O6 UXX 51 UXX H10 H1 H 0 1 N N N N N N 16.483 7.610 11.797 4.317 2.912 0.990 H10 UXX 52 UXX H15 H2 H 0 1 N N N N N N 17.597 8.032 16.324 4.661 1.175 -3.045 H15 UXX 53 UXX H8 H3 H 0 1 N N N N N N 14.922 4.053 9.776 1.992 6.712 1.029 H8 UXX 54 UXX H7 H4 H 0 1 N N N N N N 15.004 3.529 11.492 0.742 5.471 1.284 H7 UXX 55 UXX H32 H5 H 0 1 N N N N N N 17.797 11.045 7.291 -6.339 2.103 -3.038 H32 UXX 56 UXX H1 H6 H 0 1 N N N N N N 20.508 9.130 14.311 6.159 -0.982 -0.219 H1 UXX 57 UXX H13 H7 H 0 1 N N N N N N 17.792 10.165 15.230 4.004 -0.988 -2.408 H13 UXX 58 UXX H H8 H 0 1 N N N N N N 18.609 6.585 14.192 5.950 1.839 -0.512 H UXX 59 UXX H12 H9 H 0 1 N N N N N N 16.275 8.528 13.962 3.017 2.022 -1.340 H12 UXX 60 UXX H11 H10 H 0 1 N N N N N N 16.194 6.866 14.639 4.265 3.192 -1.831 H11 UXX 61 UXX H16 H11 H 0 1 N N N N N N 19.456 6.615 16.383 6.922 0.553 -3.503 H16 UXX 62 UXX H17 H12 H 0 1 N N N N N N 22.280 14.799 10.952 1.949 -5.773 1.532 H17 UXX 63 UXX H18 H13 H 0 1 N N N N N N 20.864 14.294 10.314 3.024 -6.925 2.116 H18 UXX 64 UXX H9 H14 H 0 1 N N N N N N 15.965 6.075 10.370 3.230 4.528 2.283 H9 UXX 65 UXX H6 H15 H 0 1 N N N N N N 16.426 2.143 10.060 1.292 5.412 3.701 H6 UXX 66 UXX H4 H16 H 0 1 N N N N N N 17.321 3.605 9.524 2.543 6.653 3.446 H4 UXX 67 UXX H5 H17 H 0 1 N N N N N N 17.404 3.080 11.240 0.827 7.053 3.191 H5 UXX 68 UXX H19 H18 H 0 1 N N N N N N 24.000 11.312 12.731 7.192 -5.166 1.543 H19 UXX 69 UXX H20 H19 H 0 1 N N N N N N 14.471 10.229 13.949 0.976 1.573 -1.856 H20 UXX 70 UXX H21 H20 H 0 1 N N N N N N 14.075 11.458 12.701 -0.184 0.303 -2.315 H21 UXX 71 UXX H22 H21 H 0 1 N N N N N N 12.347 9.864 12.780 0.409 2.906 0.296 H22 UXX 72 UXX H23 H22 H 0 1 N N N N N N 12.485 8.439 11.695 1.199 1.393 0.799 H23 UXX 73 UXX H25 H23 H 0 1 N N N N N N 14.100 7.599 13.652 -1.558 2.314 1.725 H25 UXX 74 UXX H24 H24 H 0 1 N N N N N N 13.076 8.717 14.616 -0.688 0.863 2.278 H24 UXX 75 UXX H26 H25 H 0 1 N N N N N N 12.056 6.608 14.773 1.134 2.292 3.165 H26 UXX 76 UXX H27 H26 H 0 1 N N N N N N 11.075 7.548 13.597 0.264 3.744 2.612 H27 UXX 77 UXX H28 H27 H 0 1 N N N N N N 12.531 4.424 11.223 -1.819 2.733 6.101 H28 UXX 78 UXX H29 H28 H 0 1 N N N N N N 13.433 9.226 10.102 -1.204 2.721 -1.619 H29 UXX 79 UXX H30 H29 H 0 1 N N N N N N 13.797 10.929 10.543 -2.126 2.442 -0.123 H30 UXX 80 UXX H2 H30 H 0 1 N N N N N N 16.201 10.431 10.406 -2.037 0.517 -2.493 H2 UXX 81 UXX H3 H31 H 0 1 N N N N N N 17.972 8.560 9.485 -4.543 -0.773 -2.131 H3 UXX 82 UXX H31 H32 H 0 1 N N N N N N 16.647 9.038 6.936 -5.326 1.921 -0.883 H31 UXX 83 UXX H33 H33 H 0 1 N N N N N N 14.656 9.720 7.886 -3.578 2.959 -2.061 H33 UXX 84 UXX H35 H34 H 0 1 N N N N N N 15.103 6.861 7.491 -4.385 0.161 1.563 H35 UXX 85 UXX H38 H35 H 0 1 N N N N N N 21.072 5.314 9.229 -8.828 -2.909 -2.073 H38 UXX 86 UXX H37 H36 H 0 1 N N N N N N 19.212 2.336 6.771 -8.269 -2.247 3.133 H37 UXX 87 UXX H36 H37 H 0 1 N N N N N N 17.622 2.459 7.123 -9.531 -3.104 2.428 H36 UXX 88 UXX H14 H39 H 0 1 N N N N N N 19.059 10.304 17.187 5.952 -1.515 -3.684 H14 UXX 89 UXX H34 H40 H 0 1 N N N N N N 14.728 11.955 8.526 -4.416 2.238 -4.204 H34 UXX 90 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UXX C C1 SING N N 1 UXX C1 N SING N N 2 UXX N C2 SING N N 3 UXX C2 O DOUB N N 4 UXX N1 C2 SING N N 5 UXX C3 N1 SING N N 6 UXX C4 C3 SING N N 7 UXX C4 O1 SING N N 8 UXX O1 C5 SING N N 9 UXX C5 C6 SING N N 10 UXX O2 C6 SING N N 11 UXX C6 C7 SING N N 12 UXX C7 C4 SING N N 13 UXX O3 C7 SING N N 14 UXX N2 C5 SING N N 15 UXX N2 C8 SING Y N 16 UXX C8 N3 DOUB Y N 17 UXX N3 C9 SING Y N 18 UXX C9 C10 DOUB Y N 19 UXX N4 C10 SING N N 20 UXX C10 N5 SING Y N 21 UXX N5 C11 DOUB Y N 22 UXX C11 N6 SING Y N 23 UXX N6 C12 DOUB Y N 24 UXX C12 N2 SING Y N 25 UXX C9 C12 SING Y N 26 UXX C13 C8 SING N N 27 UXX C14 C13 TRIP N N 28 UXX C15 C14 SING N N 29 UXX N7 C15 SING N N 30 UXX C16 N7 SING N N 31 UXX C17 C16 SING N N 32 UXX C18 C17 SING N N 33 UXX C19 C18 SING N N 34 UXX C20 C19 TRIP N N 35 UXX C21 N7 SING N N 36 UXX C22 C21 SING N N 37 UXX C22 O4 SING N N 38 UXX O4 C23 SING N N 39 UXX C23 C24 SING N N 40 UXX O5 C24 SING N N 41 UXX C24 C25 SING N N 42 UXX C25 C22 SING N N 43 UXX O6 C25 SING N N 44 UXX N8 C23 SING N N 45 UXX N8 C26 SING Y N 46 UXX C26 N9 DOUB Y N 47 UXX N9 C27 SING Y N 48 UXX C27 C28 DOUB Y N 49 UXX N10 C28 SING N N 50 UXX C28 N11 SING Y N 51 UXX N11 C29 DOUB Y N 52 UXX C29 N12 SING Y N 53 UXX N12 C30 DOUB Y N 54 UXX C30 N8 SING Y N 55 UXX C27 C30 SING Y N 56 UXX N1 H10 SING N N 57 UXX C7 H15 SING N N 58 UXX C1 H8 SING N N 59 UXX C1 H7 SING N N 60 UXX O5 H32 SING N N 61 UXX C5 H1 SING N N 62 UXX C6 H13 SING N N 63 UXX C4 H SING N N 64 UXX C3 H12 SING N N 65 UXX C3 H11 SING N N 66 UXX O3 H16 SING N N 67 UXX N4 H17 SING N N 68 UXX N4 H18 SING N N 69 UXX N H9 SING N N 70 UXX C H6 SING N N 71 UXX C H4 SING N N 72 UXX C H5 SING N N 73 UXX C11 H19 SING N N 74 UXX C15 H20 SING N N 75 UXX C15 H21 SING N N 76 UXX C16 H22 SING N N 77 UXX C16 H23 SING N N 78 UXX C17 H25 SING N N 79 UXX C17 H24 SING N N 80 UXX C18 H26 SING N N 81 UXX C18 H27 SING N N 82 UXX C20 H28 SING N N 83 UXX C21 H29 SING N N 84 UXX C21 H30 SING N N 85 UXX C22 H2 SING N N 86 UXX C23 H3 SING N N 87 UXX C24 H31 SING N N 88 UXX C25 H33 SING N N 89 UXX C26 H35 SING N N 90 UXX C29 H38 SING N N 91 UXX N10 H37 SING N N 92 UXX N10 H36 SING N N 93 UXX O2 H14 SING N N 94 UXX O6 H34 SING N N 95 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UXX InChI InChI 1.06 "InChI=1S/C31H39N13O7/c1-3-5-6-9-42(12-17-22(46)23(47)29(51-17)43-15-40-19-25(32)36-13-38-27(19)43)10-7-8-18-41-20-26(33)37-14-39-28(20)44(18)30-24(48)21(45)16(50-30)11-35-31(49)34-4-2/h1,13-17,21-24,29-30,45-48H,4-6,9-12H2,2H3,(H2,32,36,38)(H2,33,37,39)(H2,34,35,49)/t16-,17-,21-,22-,23-,24-,29-,30-/m1/s1" UXX InChIKey InChI 1.06 SQXVDVDWDUFQHA-OZZDRAHTSA-N UXX SMILES_CANONICAL CACTVS 3.385 "CCNC(=O)NC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2c(nc3c(N)ncnc23)C#CCN(CCCC#C)C[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56" UXX SMILES CACTVS 3.385 "CCNC(=O)NC[CH]1O[CH]([CH](O)[CH]1O)n2c(nc3c(N)ncnc23)C#CCN(CCCC#C)C[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56" UXX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCNC(=O)NC[C@@H]1[C@H]([C@H]([C@@H](O1)n2c(nc3c2ncnc3N)C#CCN(CCCC#C)C[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O)O)O" UXX SMILES "OpenEye OEToolkits" 2.0.7 "CCNC(=O)NCC1C(C(C(O1)n2c(nc3c2ncnc3N)C#CCN(CCCC#C)CC4C(C(C(O4)n5cnc6c5ncnc6N)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id UXX _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[[(2~{R},3~{S},4~{R},5~{R})-5-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-pent-4-ynyl-amino]prop-1-ynyl]-6-azanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-3-ethyl-urea" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UXX "Create component" 2023-09-07 PDBE UXX "Initial release" 2025-03-19 RCSB #