data_UY6 # _chem_comp.id UY6 _chem_comp.name "(2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[[3-[6-azanyl-9-(phenylmethyl)purin-8-yl]prop-2-ynyl-methyl-amino]methyl]oxolane-3,4-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H27 N11 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-07 _chem_comp.pdbx_modified_date 2025-03-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 541.564 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UY6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QG5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UY6 C2 C1 C 0 1 Y N N N N N 19.887 6.096 8.794 7.949 -1.186 2.002 C2 UY6 1 UY6 C4 C2 C 0 1 Y N N N N N 17.642 6.394 8.265 6.180 -0.871 0.568 C4 UY6 2 UY6 C5 C3 C 0 1 Y N N N N N 17.612 5.177 7.593 6.519 -2.063 -0.094 C5 UY6 3 UY6 C6 C4 C 0 1 Y N N N N N 18.755 4.396 7.520 7.623 -2.793 0.377 C6 UY6 4 UY6 N9 N1 N 0 1 Y N N N N N 16.416 6.912 8.172 5.076 -0.378 -0.081 N9 UY6 5 UY6 C8 C5 C 0 1 Y N N N N N 15.662 6.061 7.474 4.774 -1.245 -1.088 C8 UY6 6 UY6 CAA C6 C 0 1 N N R N N N 14.871 9.990 9.734 2.596 2.196 -0.362 CAA UY6 7 UY6 CAB C7 C 0 1 N N S N N N 15.055 10.338 8.306 3.843 2.972 -0.840 CAB UY6 8 UY6 CAD C8 C 0 1 N N R N N N 16.291 9.511 7.964 5.027 2.068 -0.429 CAD UY6 9 UY6 CAF C9 C 0 1 N N R N N N 15.877 8.223 8.717 4.355 0.854 0.249 CAF UY6 10 UY6 CAR C10 C 0 1 N N N N N N 13.587 10.638 10.271 1.452 2.357 -1.365 CAR UY6 11 UY6 CAT C11 C 0 1 N N N N N N 13.586 9.103 12.184 -0.249 2.346 0.359 CAT UY6 12 UY6 CAU C12 C 0 1 N N N N N N 13.936 11.419 12.627 -0.792 1.609 -1.882 CAU UY6 13 UY6 CAV C13 C 0 1 N N N N N N 15.400 11.500 12.666 -1.876 0.726 -1.421 CAV UY6 14 UY6 CAW C14 C 0 1 N N N N N N 16.614 11.600 12.707 -2.740 0.021 -1.053 CAW UY6 15 UY6 CAX C15 C 0 1 Y N N N N N 18.038 11.713 12.746 -3.794 -0.838 -0.605 CAX UY6 16 UY6 CAZ C16 C 0 1 N N N N N N 18.424 10.014 14.515 -4.422 0.470 1.471 CAZ UY6 17 UY6 CBA C17 C 0 1 Y N N N N N 18.448 8.646 13.844 -5.314 1.605 1.037 CBA UY6 18 UY6 CBB C18 C 0 1 Y N N N N N 17.334 8.189 13.150 -4.831 2.576 0.180 CBB UY6 19 UY6 CBC C19 C 0 1 Y N N N N N 17.367 6.942 12.540 -5.650 3.614 -0.222 CBC UY6 20 UY6 CBD C20 C 0 1 Y N N N N N 18.513 6.161 12.627 -6.954 3.680 0.233 CBD UY6 21 UY6 CBE C21 C 0 1 Y N N N N N 19.627 6.618 13.320 -7.438 2.708 1.089 CBE UY6 22 UY6 CBF C22 C 0 1 Y N N N N N 19.594 7.865 13.929 -6.618 1.671 1.492 CBF UY6 23 UY6 CBG C23 C 0 1 Y N N N N N 20.107 11.369 13.317 -5.446 -1.676 0.603 CBG UY6 24 UY6 CBH C24 C 0 1 Y N N N N N 20.066 12.340 12.328 -5.202 -2.493 -0.517 CBH UY6 25 UY6 CBJ C25 C 0 1 Y N N N N N 21.254 12.903 11.883 -5.994 -3.644 -0.684 CBJ UY6 26 UY6 CBM C26 C 0 1 Y N N N N N 22.416 11.479 13.447 -7.123 -3.106 1.256 CBM UY6 27 UY6 N1 N2 N 0 1 Y N N N N N 19.918 4.862 8.130 8.302 -2.315 1.414 N1 UY6 28 UY6 N3 N3 N 0 1 Y N N N N N 18.777 6.818 8.845 6.916 -0.475 1.602 N3 UY6 29 UY6 N6 N4 N 0 1 N N N N N N 18.736 3.230 6.878 8.004 -3.975 -0.235 N6 UY6 30 UY6 N7 N5 N 0 1 Y N N N N N 16.385 5.004 7.121 5.621 -2.233 -1.094 N7 UY6 31 UY6 NAS N6 N 0 1 N N N N N N 13.273 10.464 11.712 0.252 1.682 -0.852 NAS UY6 32 UY6 NAY N7 N 0 1 Y N N N N N 18.850 11.026 13.541 -4.549 -0.641 0.525 NAY UY6 33 UY6 NBI N8 N 0 1 Y N N N N N 18.787 12.529 12.001 -4.189 -1.932 -1.214 NBI UY6 34 UY6 NBK N9 N 0 1 N N N N N N 21.256 13.837 10.936 -5.801 -4.485 -1.765 NBK UY6 35 UY6 NBL N10 N 0 1 Y N N N N N 22.452 12.466 12.453 -6.932 -3.904 0.221 NBL UY6 36 UY6 NBN N11 N 0 1 Y N N N N N 21.268 10.964 13.851 -6.409 -2.018 1.453 NBN UY6 37 UY6 OAC O1 O 0 1 N N N N N N 15.366 11.730 8.191 3.926 4.239 -0.185 OAC UY6 38 UY6 OAE O2 O 0 1 N N N N N N 17.446 10.084 8.572 5.879 2.749 0.495 OAE UY6 39 UY6 OAQ O3 O 0 1 N N N N N N 14.587 8.579 9.347 3.018 0.817 -0.298 OAQ UY6 40 UY6 H1 H1 H 0 1 N N N N N N 20.783 6.464 9.272 8.526 -0.836 2.845 H1 UY6 41 UY6 H2 H2 H 0 1 N N N N N N 14.620 6.209 7.232 3.952 -1.129 -1.779 H2 UY6 42 UY6 H3 H3 H 0 1 N N N N N N 15.755 10.133 10.373 2.287 2.544 0.624 H3 UY6 43 UY6 H4 H4 H 0 1 N N N N N N 14.191 10.041 7.693 3.820 3.102 -1.922 H4 UY6 44 UY6 H5 H5 H 0 1 N N N N N N 16.393 9.340 6.882 5.591 1.755 -1.307 H5 UY6 45 UY6 H6 H6 H 0 1 N N N N N N 16.533 8.325 9.594 4.319 0.994 1.329 H6 UY6 46 UY6 H7 H7 H 0 1 N N N N N N 13.660 11.719 10.080 1.239 3.417 -1.507 H7 UY6 47 UY6 H8 H8 H 0 1 N N N N N N 12.745 10.221 9.699 1.739 1.913 -2.318 H8 UY6 48 UY6 H9 H9 H 0 1 N N N N N N 13.339 9.019 13.253 -0.502 3.381 0.128 H9 UY6 49 UY6 H10 H10 H 0 1 N N N N N N 12.995 8.372 11.613 -1.137 1.826 0.718 H10 UY6 50 UY6 H11 H11 H 0 1 N N N N N N 14.658 8.902 12.039 0.521 2.324 1.130 H11 UY6 51 UY6 H12 H12 H 0 1 N N N N N N 13.569 12.421 12.360 -0.366 1.211 -2.803 H12 UY6 52 UY6 H13 H13 H 0 1 N N N N N N 13.605 11.166 13.645 -1.190 2.606 -2.067 H13 UY6 53 UY6 H14 H14 H 0 1 N N N N N N 19.110 10.016 15.375 -3.387 0.811 1.494 H14 UY6 54 UY6 H15 H15 H 0 1 N N N N N N 17.404 10.239 14.860 -4.717 0.136 2.466 H15 UY6 55 UY6 H16 H16 H 0 1 N N N N N N 16.447 8.801 13.085 -3.812 2.524 -0.175 H16 UY6 56 UY6 H17 H17 H 0 1 N N N N N N 16.505 6.580 12.000 -5.273 4.372 -0.890 H17 UY6 57 UY6 H18 H18 H 0 1 N N N N N N 18.538 5.191 12.152 -7.595 4.491 -0.081 H18 UY6 58 UY6 H19 H19 H 0 1 N N N N N N 20.514 6.006 13.385 -8.457 2.760 1.444 H19 UY6 59 UY6 H20 H20 H 0 1 N N N N N N 20.457 8.227 14.468 -6.997 0.910 2.157 H20 UY6 60 UY6 H21 H21 H 0 1 N N N N N N 23.339 11.134 13.889 -7.898 -3.354 1.967 H21 UY6 61 UY6 H22 H22 H 0 1 N N N N N N 19.642 2.808 6.925 7.506 -4.308 -0.998 H22 UY6 62 UY6 H23 H23 H 0 1 N N N N N N 18.064 2.625 7.306 8.768 -4.470 0.100 H23 UY6 63 UY6 H25 H25 H 0 1 N N N N N N 22.197 14.120 10.748 -5.113 -4.285 -2.419 H25 UY6 64 UY6 H26 H26 H 0 1 N N N N N N 20.847 13.467 10.102 -6.353 -5.276 -1.869 H26 UY6 65 UY6 H27 H27 H 0 1 N N N N N N 14.597 12.245 8.404 4.692 4.769 -0.448 H27 UY6 66 UY6 H28 H28 H 0 1 N N N N N N 18.210 9.563 8.354 6.281 3.554 0.140 H28 UY6 67 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UY6 N6 C6 SING N N 1 UY6 N7 C8 DOUB Y N 2 UY6 N7 C5 SING Y N 3 UY6 C8 N9 SING Y N 4 UY6 C6 C5 DOUB Y N 5 UY6 C6 N1 SING Y N 6 UY6 C5 C4 SING Y N 7 UY6 CAD CAB SING N N 8 UY6 CAD OAE SING N N 9 UY6 CAD CAF SING N N 10 UY6 N1 C2 DOUB Y N 11 UY6 N9 C4 SING Y N 12 UY6 N9 CAF SING N N 13 UY6 OAC CAB SING N N 14 UY6 C4 N3 DOUB Y N 15 UY6 CAB CAA SING N N 16 UY6 CAF OAQ SING N N 17 UY6 C2 N3 SING Y N 18 UY6 OAQ CAA SING N N 19 UY6 CAA CAR SING N N 20 UY6 CAR NAS SING N N 21 UY6 NBK CBJ SING N N 22 UY6 NAS CAT SING N N 23 UY6 NAS CAU SING N N 24 UY6 CBJ CBH DOUB Y N 25 UY6 CBJ NBL SING Y N 26 UY6 NBI CBH SING Y N 27 UY6 NBI CAX DOUB Y N 28 UY6 CBH CBG SING Y N 29 UY6 NBL CBM DOUB Y N 30 UY6 CBC CBD DOUB Y N 31 UY6 CBC CBB SING Y N 32 UY6 CBD CBE SING Y N 33 UY6 CAU CAV SING N N 34 UY6 CAV CAW TRIP N N 35 UY6 CAW CAX SING N N 36 UY6 CAX NAY SING Y N 37 UY6 CBB CBA DOUB Y N 38 UY6 CBG NAY SING Y N 39 UY6 CBG NBN DOUB Y N 40 UY6 CBE CBF DOUB Y N 41 UY6 CBM NBN SING Y N 42 UY6 NAY CAZ SING N N 43 UY6 CBA CBF SING Y N 44 UY6 CBA CAZ SING N N 45 UY6 C2 H1 SING N N 46 UY6 C8 H2 SING N N 47 UY6 CAA H3 SING N N 48 UY6 CAB H4 SING N N 49 UY6 CAD H5 SING N N 50 UY6 CAF H6 SING N N 51 UY6 CAR H7 SING N N 52 UY6 CAR H8 SING N N 53 UY6 CAT H9 SING N N 54 UY6 CAT H10 SING N N 55 UY6 CAT H11 SING N N 56 UY6 CAU H12 SING N N 57 UY6 CAU H13 SING N N 58 UY6 CAZ H14 SING N N 59 UY6 CAZ H15 SING N N 60 UY6 CBB H16 SING N N 61 UY6 CBC H17 SING N N 62 UY6 CBD H18 SING N N 63 UY6 CBE H19 SING N N 64 UY6 CBF H20 SING N N 65 UY6 CBM H21 SING N N 66 UY6 N6 H22 SING N N 67 UY6 N6 H23 SING N N 68 UY6 NBK H25 SING N N 69 UY6 NBK H26 SING N N 70 UY6 OAC H27 SING N N 71 UY6 OAE H28 SING N N 72 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UY6 InChI InChI 1.06 "InChI=1S/C26H27N11O3/c1-35(11-16-20(38)21(39)26(40-16)37-14-33-18-22(27)29-12-31-24(18)37)9-5-8-17-34-19-23(28)30-13-32-25(19)36(17)10-15-6-3-2-4-7-15/h2-4,6-7,12-14,16,20-21,26,38-39H,9-11H2,1H3,(H2,27,29,31)(H2,28,30,32)/t16-,20-,21-,26-/m1/s1" UY6 InChIKey InChI 1.06 ZVDFDXJRBXGTOT-RRQFZRKBSA-N UY6 SMILES_CANONICAL CACTVS 3.385 "CN(CC#Cc1nc2c(N)ncnc2n1Cc3ccccc3)C[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56" UY6 SMILES CACTVS 3.385 "CN(CC#Cc1nc2c(N)ncnc2n1Cc3ccccc3)C[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56" UY6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(CC#Cc1nc2c(ncnc2n1Cc3ccccc3)N)C[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O" UY6 SMILES "OpenEye OEToolkits" 2.0.7 "CN(CC#Cc1nc2c(ncnc2n1Cc3ccccc3)N)CC4C(C(C(O4)n5cnc6c5ncnc6N)O)O" # _pdbx_chem_comp_identifier.comp_id UY6 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[[3-[6-azanyl-9-(phenylmethyl)purin-8-yl]prop-2-ynyl-methyl-amino]methyl]oxolane-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UY6 "Create component" 2023-09-07 PDBE UY6 "Initial release" 2025-03-19 RCSB #