data_UY7 # _chem_comp.id UY7 _chem_comp.name "(4S)-4-hydroxy-D-proline" _chem_comp.type "D-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H9 N O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-06-04 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 131.130 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UY7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6X9A _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UY7 CB C1 C 0 1 N N N N N N -20.746 73.819 103.141 -0.505 -0.790 0.670 C01 UY7 1 UY7 CG C2 C 0 1 N N S N N N -20.923 74.518 104.485 -1.907 -0.156 0.521 C02 UY7 2 UY7 CD C3 C 0 1 N N N N N N -22.296 75.205 104.377 -1.663 1.200 -0.169 C03 UY7 3 UY7 CA C4 C 0 1 N N R Y N N -22.160 73.601 102.581 0.324 -0.057 -0.414 C05 UY7 4 UY7 C C5 C 0 1 N N N Y N Y -22.256 74.160 101.119 1.791 -0.081 -0.068 C06 UY7 5 UY7 N N1 N 0 1 N N N Y Y N -23.107 74.270 103.545 -0.203 1.330 -0.366 N04 UY7 6 UY7 OXT O1 O 0 1 N Y N Y N Y -22.914 75.218 100.951 2.522 -1.178 -0.319 O07 UY7 7 UY7 O O2 O 0 1 N N N Y N Y -21.662 73.520 100.230 2.309 0.888 0.435 O08 UY7 8 UY7 O09 O3 O 0 1 N N N N N N -20.997 73.540 105.489 -2.741 -0.983 -0.292 O09 UY7 9 UY7 HB2 H1 H 0 1 N N N N N N -20.237 72.853 103.278 -0.098 -0.597 1.663 H1 UY7 10 UY7 HB3 H2 H 0 1 N N N N N N -20.158 74.450 102.458 -0.543 -1.861 0.472 H2 UY7 11 UY7 HG2 H3 H 0 1 N N N N N N -20.126 75.256 104.658 -2.361 -0.007 1.500 H3 UY7 12 UY7 HD2 H4 H 0 1 N N N N N N -22.205 76.185 103.886 -2.172 1.222 -1.133 H4 UY7 13 UY7 HD3 H5 H 0 1 N N N N N N -22.747 75.334 105.372 -2.030 2.009 0.463 H5 UY7 14 UY7 HA H6 H 0 1 N N N Y N N -22.370 72.522 102.556 0.152 -0.500 -1.395 H6 UY7 15 UY7 H H7 H 0 1 N Y N Y Y N -23.807 74.777 103.042 0.218 1.851 0.389 H7 UY7 16 UY7 HXT H9 H 0 1 N Y N Y N Y -22.892 75.463 100.033 3.459 -1.146 -0.080 H9 UY7 17 UY7 H10 H10 H 0 1 N N N N N N -21.108 73.960 106.334 -3.634 -0.635 -0.421 H10 UY7 18 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UY7 O C DOUB N N 1 UY7 OXT C SING N N 2 UY7 C CA SING N N 3 UY7 CA CB SING N N 4 UY7 CA N SING N N 5 UY7 CB CG SING N N 6 UY7 N CD SING N N 7 UY7 CD CG SING N N 8 UY7 CG O09 SING N N 9 UY7 CB HB2 SING N N 10 UY7 CB HB3 SING N N 11 UY7 CG HG2 SING N N 12 UY7 CD HD2 SING N N 13 UY7 CD HD3 SING N N 14 UY7 CA HA SING N N 15 UY7 N H SING N N 16 UY7 OXT HXT SING N N 17 UY7 O09 H10 SING N N 18 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UY7 SMILES ACDLabs 12.01 "C1C(O)CNC1C(O)=O" UY7 InChI InChI 1.03 "InChI=1S/C5H9NO3/c7-3-1-4(5(8)9)6-2-3/h3-4,6-7H,1-2H2,(H,8,9)/t3-,4+/m0/s1" UY7 InChIKey InChI 1.03 PMMYEEVYMWASQN-IUYQGCFVSA-N UY7 SMILES_CANONICAL CACTVS 3.385 "O[C@@H]1CN[C@H](C1)C(O)=O" UY7 SMILES CACTVS 3.385 "O[CH]1CN[CH](C1)C(O)=O" UY7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@@H](CN[C@H]1C(=O)O)O" UY7 SMILES "OpenEye OEToolkits" 2.0.7 "C1C(CNC1C(=O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier UY7 "SYSTEMATIC NAME" ACDLabs 12.01 "(4S)-4-hydroxy-D-proline" UY7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},4~{S})-4-oxidanylpyrrolidine-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UY7 "Create component" 2020-06-04 RCSB UY7 "Initial release" 2020-12-30 RCSB UY7 "Modify backbone" 2024-09-25 PDBE UY7 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id UY7 _pdbx_chem_comp_pcm.modified_residue_id DPR _pdbx_chem_comp_pcm.type Hydroxylation _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #