data_UYA # _chem_comp.id UYA _chem_comp.name "(4R)-4-hydroxy-D-proline" _chem_comp.type "D-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H9 N O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-06-04 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 131.130 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UYA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6X9B _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UYA N N1 N 0 1 N N N Y Y N -22.913 74.300 103.125 -0.167 1.350 -0.372 N UYA 1 UYA CA C1 C 0 1 N N R Y N N -22.100 73.470 102.169 0.457 0.033 -0.621 CA UYA 2 UYA C C2 C 0 1 N N N Y N Y -22.211 74.085 100.747 1.803 -0.045 0.052 C UYA 3 UYA OXT O1 O 0 1 N Y N Y N Y -23.026 75.005 100.575 2.669 -1.012 -0.290 O UYA 4 UYA CB C3 C 0 1 N N N N N N -20.638 73.501 102.660 -0.520 -0.992 0.007 CB UYA 5 UYA CG C4 C 0 1 N N R N N N -20.570 74.846 103.391 -1.896 -0.356 -0.322 CG UYA 6 UYA CD C5 C 0 1 N N N N N N -21.970 74.984 104.031 -1.619 1.157 -0.198 CD UYA 7 UYA OD1 O2 O 0 1 N N N N N N -20.339 75.865 102.479 -2.883 -0.769 0.626 OD1 UYA 8 UYA O O3 O 0 1 N N N Y N Y -21.442 73.585 99.876 2.103 0.763 0.899 OXT UYA 9 UYA H H1 H 0 1 N Y N Y Y N -23.451 74.975 102.619 0.238 1.795 0.438 H1 UYA 10 UYA HA H3 H 0 1 N N N Y N N -22.467 72.433 102.154 0.556 -0.143 -1.692 H3 UYA 11 UYA HXT H4 H 0 1 N Y N Y N Y -22.993 75.293 99.670 3.520 -1.021 0.168 H4 UYA 12 UYA HB2 H5 H 0 1 N N N N N N -20.429 72.665 103.343 -0.418 -1.969 -0.466 H5 UYA 13 UYA HB3 H6 H 0 1 N N N N N N -19.933 73.470 101.816 -0.370 -1.065 1.084 H6 UYA 14 UYA HG2 H7 H 0 1 N N N N N N -19.802 74.809 104.177 -2.205 -0.609 -1.336 H7 UYA 15 UYA HD2 H8 H 0 1 N N N N N N -22.240 76.046 104.130 -1.924 1.510 0.787 H8 UYA 16 UYA HD3 H9 H 0 1 N N N N N N -21.983 74.509 105.023 -2.161 1.698 -0.973 H9 UYA 17 UYA H10 H10 H 0 1 N N N N N N -20.298 76.697 102.936 -3.761 -0.399 0.465 H10 UYA 18 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UYA O C DOUB N N 1 UYA OXT C SING N N 2 UYA C CA SING N N 3 UYA CA CB SING N N 4 UYA CA N SING N N 5 UYA OD1 CG SING N N 6 UYA CB CG SING N N 7 UYA N CD SING N N 8 UYA CG CD SING N N 9 UYA N H SING N N 10 UYA CA HA SING N N 11 UYA OXT HXT SING N N 12 UYA CB HB2 SING N N 13 UYA CB HB3 SING N N 14 UYA CG HG2 SING N N 15 UYA CD HD2 SING N N 16 UYA CD HD3 SING N N 17 UYA OD1 H10 SING N N 18 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UYA SMILES ACDLabs 12.01 "N1CC(CC1C(O)=O)O" UYA InChI InChI 1.03 "InChI=1S/C5H9NO3/c7-3-1-4(5(8)9)6-2-3/h3-4,6-7H,1-2H2,(H,8,9)/t3-,4-/m1/s1" UYA InChIKey InChI 1.03 PMMYEEVYMWASQN-QWWZWVQMSA-N UYA SMILES_CANONICAL CACTVS 3.385 "O[C@H]1CN[C@H](C1)C(O)=O" UYA SMILES CACTVS 3.385 "O[CH]1CN[CH](C1)C(O)=O" UYA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@H](CN[C@H]1C(=O)O)O" UYA SMILES "OpenEye OEToolkits" 2.0.7 "C1C(CNC1C(=O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier UYA "SYSTEMATIC NAME" ACDLabs 12.01 "(4R)-4-hydroxy-D-proline" UYA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},4~{R})-4-oxidanylpyrrolidine-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UYA "Create component" 2020-06-04 RCSB UYA "Initial release" 2020-12-30 RCSB UYA "Modify backbone" 2024-09-25 PDBE UYA "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id UYA _pdbx_chem_comp_pcm.modified_residue_id DPR _pdbx_chem_comp_pcm.type Hydroxylation _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #