data_UYO # _chem_comp.id UYO _chem_comp.name "(1R,3S,5Z)-5-[(2E)-2-[(1R,3aS,7aR)-7a-methyl-1-[(2R)-6-methyl-6-nitro-heptan-2-yl]-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H43 N O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "25-nitro derivative of 1,25D3" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-02-15 _chem_comp.pdbx_modified_date 2023-04-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 445.635 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UYO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8CK5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UYO C1 C1 C 0 1 N N R -26.747 16.675 -6.254 -2.348 1.061 -0.171 C1 UYO 1 UYO C2 C2 C 0 1 N N N -26.291 17.924 -7.013 -3.635 0.712 0.579 C2 UYO 2 UYO C3 C3 C 0 1 N N N -25.561 17.514 -8.305 -4.572 -0.063 -0.350 C3 UYO 3 UYO C4 C4 C 0 1 N N N -25.477 18.696 -9.291 -5.860 -0.412 0.399 C4 UYO 4 UYO C5 C5 C 0 1 N N N -25.069 18.281 -10.717 -6.796 -1.187 -0.530 C5 UYO 5 UYO C6 C6 C 0 1 N N N -24.833 19.460 -11.654 -6.109 -2.474 -0.989 C6 UYO 6 UYO C11 C7 C 0 1 N N S -30.026 17.214 -4.479 1.004 1.894 1.224 C11 UYO 7 UYO C13 C8 C 0 1 N N N -27.868 18.297 -4.513 -0.994 0.752 1.943 C13 UYO 8 UYO C15 C9 C 0 1 N N N -32.116 16.047 -5.452 2.654 3.073 -0.325 C15 UYO 9 UYO C16 C10 C 0 1 N N N -31.217 15.490 -6.476 1.505 3.348 -1.293 C16 UYO 10 UYO C17 C11 C 0 1 N N N -29.770 15.379 -6.068 0.136 3.368 -0.564 C17 UYO 11 UYO C18 C12 C 0 1 N N N -32.221 18.522 -4.764 3.201 0.858 0.706 C18 UYO 12 UYO C19 C13 C 0 1 N N N -33.702 18.412 -5.204 4.497 0.886 0.023 C19 UYO 13 UYO C23 C14 C 0 1 N N N -35.864 22.119 -5.826 6.829 -2.606 -0.066 C23 UYO 14 UYO C24 C15 C 0 1 N N S -34.479 22.230 -5.244 5.402 -2.665 0.488 C24 UYO 15 UYO C25 C16 C 0 1 N N N -33.810 20.897 -5.529 5.046 -1.297 1.035 C25 UYO 16 UYO C26 C17 C 0 1 N N N -32.631 21.012 -6.487 4.473 -1.151 2.230 C26 UYO 17 UYO N N1 N 0 1 N N N -23.820 17.603 -10.606 -8.029 -1.521 0.188 N UYO 18 UYO C C18 C 0 1 N N N -25.543 16.144 -5.476 -2.669 2.023 -1.316 C UYO 19 UYO O O1 O 0 1 N N N -22.713 18.325 -10.140 -9.079 -1.623 -0.421 O UYO 20 UYO C10 C19 C 0 1 N N N -29.592 17.763 -6.894 0.207 0.919 -0.953 C10 UYO 21 UYO C12 C20 C 0 1 N N N -29.413 18.567 -4.095 0.554 0.602 1.909 C12 UYO 22 UYO C14 C21 C 0 1 N N N -31.539 17.158 -4.614 2.344 1.867 0.550 C14 UYO 23 UYO C20 C22 C 0 1 N N N -34.458 19.737 -5.386 5.365 -0.134 0.181 C20 UYO 24 UYO C21 C23 C 0 1 N N N -35.939 19.622 -5.739 6.714 -0.143 -0.509 C21 UYO 25 UYO C22 C24 C 0 1 N N R -36.618 20.915 -5.290 6.924 -1.523 -1.142 C22 UYO 26 UYO C7 C25 C 0 1 N N N -26.102 17.359 -11.355 -7.133 -0.326 -1.749 C7 UYO 27 UYO C8 C26 C 0 1 N N R -27.884 16.907 -5.231 -1.362 1.725 0.792 C8 UYO 28 UYO C9 C27 C 0 1 N N R -29.280 16.795 -5.740 -0.047 2.015 0.084 C9 UYO 29 UYO O1 O2 O 0 1 N N N -23.762 16.470 -10.889 -8.004 -1.696 1.393 O1 UYO 30 UYO O2 O3 O 0 1 N N N -36.651 20.953 -3.882 8.213 -1.573 -1.755 O2 UYO 31 UYO O3 O4 O 0 1 N N N -33.783 23.275 -5.854 4.494 -3.017 -0.558 O3 UYO 32 UYO H1 H1 H 0 1 N N N -27.071 15.913 -6.978 -1.905 0.150 -0.574 H1 UYO 33 UYO H2 H2 H 0 1 N N N -25.609 18.508 -6.378 -3.396 0.098 1.447 H2 UYO 34 UYO H3 H3 H 0 1 N N N -27.168 18.536 -7.268 -4.125 1.629 0.906 H3 UYO 35 UYO H4 H4 H 0 1 N N N -26.109 16.687 -8.781 -4.812 0.550 -1.219 H4 UYO 36 UYO H5 H5 H 0 1 N N N -24.543 17.183 -8.053 -4.082 -0.980 -0.677 H5 UYO 37 UYO H6 H6 H 0 1 N N N -24.734 19.413 -8.912 -5.620 -1.025 1.268 H6 UYO 38 UYO H7 H7 H 0 1 N N N -26.464 19.180 -9.338 -6.350 0.505 0.726 H7 UYO 39 UYO H8 H8 H 0 1 N N N -24.089 20.138 -11.211 -6.776 -3.026 -1.651 H8 UYO 40 UYO H9 H9 H 0 1 N N N -24.462 19.091 -12.621 -5.192 -2.226 -1.523 H9 UYO 41 UYO H10 H10 H 0 1 N N N -25.778 20.002 -11.807 -5.869 -3.088 -0.120 H10 UYO 42 UYO H11 H11 H 0 1 N N N -29.747 16.501 -3.689 0.935 2.739 1.909 H11 UYO 43 UYO H12 H12 H 0 1 N N N -27.225 18.265 -3.621 -1.468 -0.216 1.780 H12 UYO 44 UYO H13 H13 H 0 1 N N N -27.509 19.081 -5.195 -1.309 1.167 2.900 H13 UYO 45 UYO H14 H14 H 0 1 N N N -33.009 16.437 -5.962 3.563 2.879 -0.894 H14 UYO 46 UYO H15 H15 H 0 1 N N N -32.407 15.229 -4.776 2.806 3.946 0.308 H15 UYO 47 UYO H16 H16 H 0 1 N N N -31.271 16.136 -7.364 1.668 4.316 -1.767 H16 UYO 48 UYO H17 H17 H 0 1 N N N -31.576 14.483 -6.733 1.486 2.576 -2.062 H17 UYO 49 UYO H18 H18 H 0 1 N N N -29.677 14.734 -5.182 0.131 4.153 0.192 H18 UYO 50 UYO H19 H19 H 0 1 N N N -29.177 14.957 -6.893 -0.664 3.541 -1.283 H19 UYO 51 UYO H20 H20 H 0 1 N N N -31.721 19.462 -4.582 2.941 0.021 1.337 H20 UYO 52 UYO H22 H22 H 0 1 N N N -34.177 17.457 -5.373 4.757 1.724 -0.608 H22 UYO 53 UYO H24 H24 H 0 1 N N N -35.782 22.028 -6.919 7.523 -2.375 0.742 H24 UYO 54 UYO H25 H25 H 0 1 N N N -36.427 23.030 -5.575 7.089 -3.571 -0.501 H25 UYO 55 UYO H26 H26 H 0 1 N N N -34.547 22.379 -4.156 5.348 -3.405 1.286 H26 UYO 56 UYO H28 H28 H 0 1 N N N -32.352 21.976 -6.887 4.231 -0.163 2.595 H28 UYO 57 UYO H29 H29 H 0 1 N N N -32.074 20.130 -6.766 4.251 -2.019 2.833 H29 UYO 58 UYO H31 H31 H 0 1 N N N -25.836 15.243 -4.917 -3.113 2.933 -0.913 H31 UYO 59 UYO H32 H32 H 0 1 N N N -24.734 15.893 -6.178 -1.752 2.271 -1.850 H32 UYO 60 UYO H33 H33 H 0 1 N N N -25.192 16.914 -4.773 -3.372 1.549 -2.002 H33 UYO 61 UYO H34 H34 H 0 1 N N N -29.232 18.770 -6.636 1.220 1.015 -1.342 H34 UYO 62 UYO H35 H35 H 0 1 N N N -29.089 17.417 -7.809 0.088 -0.058 -0.485 H35 UYO 63 UYO H36 H36 H 0 1 N N N -30.679 17.794 -7.063 -0.507 1.020 -1.770 H36 UYO 64 UYO H37 H37 H 0 1 N N N -29.516 18.773 -3.019 0.844 -0.269 1.322 H37 UYO 65 UYO H38 H38 H 0 1 N N N -29.854 19.394 -4.670 0.957 0.540 2.920 H38 UYO 66 UYO H41 H41 H 0 1 N N N -36.058 19.493 -6.825 6.736 0.623 -1.283 H41 UYO 67 UYO H42 H42 H 0 1 N N N -36.384 18.763 -5.217 7.501 0.049 0.221 H42 UYO 68 UYO H43 H43 H 0 1 N N N -37.641 20.932 -5.694 6.157 -1.695 -1.897 H43 UYO 69 UYO H44 H44 H 0 1 N N N -26.286 16.500 -10.693 -7.623 0.591 -1.422 H44 UYO 70 UYO H45 H45 H 0 1 N N N -27.041 17.911 -11.509 -6.216 -0.077 -2.283 H45 UYO 71 UYO H46 H46 H 0 1 N N N -25.724 17.000 -12.324 -7.800 -0.878 -2.411 H46 UYO 72 UYO H47 H47 H 0 1 N N N -27.760 16.148 -4.444 -1.787 2.644 1.194 H47 UYO 73 UYO H48 H48 H 0 1 N N N -37.124 20.197 -3.555 8.345 -0.913 -2.449 H48 UYO 74 UYO H49 H49 H 0 1 N N N -32.912 23.336 -5.480 3.571 -3.072 -0.275 H49 UYO 75 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UYO C6 C5 SING N N 1 UYO C7 C5 SING N N 2 UYO O1 N DOUB N N 3 UYO C5 N SING N N 4 UYO C5 C4 SING N N 5 UYO N O DOUB N N 6 UYO C4 C3 SING N N 7 UYO C3 C2 SING N N 8 UYO C2 C1 SING N N 9 UYO C10 C9 SING N N 10 UYO C26 C25 DOUB N N 11 UYO C16 C17 SING N N 12 UYO C16 C15 SING N N 13 UYO C1 C SING N N 14 UYO C1 C8 SING N N 15 UYO C17 C9 SING N N 16 UYO O3 C24 SING N N 17 UYO C23 C22 SING N N 18 UYO C23 C24 SING N N 19 UYO C9 C8 SING N N 20 UYO C9 C11 SING N N 21 UYO C21 C20 SING N N 22 UYO C21 C22 SING N N 23 UYO C25 C20 SING N N 24 UYO C25 C24 SING N N 25 UYO C15 C14 SING N N 26 UYO C20 C19 DOUB N Z 27 UYO C22 O2 SING N N 28 UYO C8 C13 SING N N 29 UYO C19 C18 SING N N 30 UYO C18 C14 DOUB N E 31 UYO C14 C11 SING N N 32 UYO C13 C12 SING N N 33 UYO C11 C12 SING N N 34 UYO C1 H1 SING N N 35 UYO C2 H2 SING N N 36 UYO C2 H3 SING N N 37 UYO C3 H4 SING N N 38 UYO C3 H5 SING N N 39 UYO C4 H6 SING N N 40 UYO C4 H7 SING N N 41 UYO C6 H8 SING N N 42 UYO C6 H9 SING N N 43 UYO C6 H10 SING N N 44 UYO C11 H11 SING N N 45 UYO C13 H12 SING N N 46 UYO C13 H13 SING N N 47 UYO C15 H14 SING N N 48 UYO C15 H15 SING N N 49 UYO C16 H16 SING N N 50 UYO C16 H17 SING N N 51 UYO C17 H18 SING N N 52 UYO C17 H19 SING N N 53 UYO C18 H20 SING N N 54 UYO C19 H22 SING N N 55 UYO C23 H24 SING N N 56 UYO C23 H25 SING N N 57 UYO C24 H26 SING N N 58 UYO C26 H28 SING N N 59 UYO C26 H29 SING N N 60 UYO C H31 SING N N 61 UYO C H32 SING N N 62 UYO C H33 SING N N 63 UYO C10 H34 SING N N 64 UYO C10 H35 SING N N 65 UYO C10 H36 SING N N 66 UYO C12 H37 SING N N 67 UYO C12 H38 SING N N 68 UYO C21 H41 SING N N 69 UYO C21 H42 SING N N 70 UYO C22 H43 SING N N 71 UYO C7 H44 SING N N 72 UYO C7 H45 SING N N 73 UYO C7 H46 SING N N 74 UYO C8 H47 SING N N 75 UYO O2 H48 SING N N 76 UYO O3 H49 SING N N 77 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UYO InChI InChI 1.06 "InChI=1S/C27H43NO4/c1-18(8-6-14-26(3,4)28(31)32)23-12-13-24-20(9-7-15-27(23,24)5)10-11-21-16-22(29)17-25(30)19(21)2/h10-11,18,22-25,29-30H,2,6-9,12-17H2,1,3-5H3/b20-10+,21-11-/t18-,22-,23-,24+,25+,27-/m1/s1" UYO InChIKey InChI 1.06 SSROHWHVGDBOBJ-NKMMMXOESA-N UYO SMILES_CANONICAL CACTVS 3.385 "C[C@H](CCCC(C)(C)[N](=O)=O)[C@H]1CC[C@H]2/C(CCC[C@]12C)=C/C=C\3C[C@@H](O)C[C@H](O)C\3=C" UYO SMILES CACTVS 3.385 "C[CH](CCCC(C)(C)[N](=O)=O)[CH]1CC[CH]2C(CCC[C]12C)=CC=C3C[CH](O)C[CH](O)C3=C" UYO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](CCCC(C)(C)N(=O)=O)[C@H]1CC[C@@H]\2[C@@]1(CCC/C2=C\C=C/3\C[C@H](C[C@@H](C3=C)O)O)C" UYO SMILES "OpenEye OEToolkits" 2.0.7 "CC(CCCC(C)(C)N(=O)=O)C1CCC2C1(CCCC2=CC=C3CC(CC(C3=C)O)O)C" # _pdbx_chem_comp_identifier.comp_id UYO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(1~{R},3~{S},5~{Z})-5-[(2~{E})-2-[(1~{R},3~{a}~{S},7~{a}~{R})-7~{a}-methyl-1-[(2~{R})-6-methyl-6-nitro-heptan-2-yl]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id UYO _pdbx_chem_comp_synonyms.name "25-nitro derivative of 1,25D3" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UYO "Create component" 2023-02-15 PDBE UYO "Modify aromatic_flag" 2023-02-20 PDBE UYO "Initial release" 2023-04-26 RCSB #