data_UZ6 # _chem_comp.id UZ6 _chem_comp.name "1-[[(2~{R},3~{S},4~{R},5~{R})-5-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(3-azanylpropyl)amino]prop-1-ynyl]-6-azanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-3-ethyl-urea" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H40 N14 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-07 _chem_comp.pdbx_modified_date 2025-03-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 696.717 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UZ6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QG4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UZ6 N1 N1 N 0 1 N N N N N N 16.595 7.025 12.722 3.794 3.198 0.384 N1 UZ6 1 UZ6 C7 C1 C 0 1 N N S N N N 18.702 8.010 15.749 5.290 0.856 -2.210 C7 UZ6 2 UZ6 C8 C2 C 0 1 Y N N N N N 18.753 11.411 12.863 2.936 -2.099 -0.096 C8 UZ6 3 UZ6 N2 N2 N 0 1 Y N N N N N 19.757 10.613 13.398 4.305 -1.996 -0.075 N2 UZ6 4 UZ6 C9 C3 C 0 1 Y N N N N N 20.587 12.352 12.336 3.676 -3.977 0.712 C9 UZ6 5 UZ6 O1 O1 O 0 1 N N N N N N 19.052 8.418 13.439 4.547 0.382 0.022 O1 UZ6 6 UZ6 C1 C4 C 0 1 N N N N N N 15.799 4.112 10.685 1.708 5.812 1.910 C1 UZ6 7 UZ6 O5 O2 O 0 1 N N N N N N 18.058 10.359 7.979 -6.051 1.390 -2.570 O5 UZ6 8 UZ6 C5 C5 C 0 1 N N R N N N 19.676 9.416 14.203 5.095 -0.842 -0.513 C5 UZ6 9 UZ6 C6 C6 C 0 1 N N R N N N 18.878 9.499 15.506 4.978 -0.651 -2.046 C6 UZ6 10 UZ6 N3 N3 N 0 1 Y N N N N N 19.203 12.480 12.231 2.576 -3.272 0.370 N3 UZ6 11 UZ6 C4 C7 C 0 1 N N R N N N 18.385 7.509 14.348 5.016 1.452 -0.815 C4 UZ6 12 UZ6 O4 O3 O 0 1 N N N N N N 16.175 8.418 9.999 -3.220 0.199 -0.708 O4 UZ6 13 UZ6 C3 C8 C 0 1 N N N N N N 16.904 7.528 14.051 3.945 2.541 -0.916 C3 UZ6 14 UZ6 O3 O4 O 0 1 N N N N N N 19.904 7.445 16.223 6.657 1.051 -2.577 O3 UZ6 15 UZ6 C2 C9 C 0 1 N N N N N N 16.394 5.728 12.458 2.934 4.227 0.524 C2 UZ6 16 UZ6 N4 N4 N 0 1 Y N N N N N 22.172 10.779 13.313 6.011 -3.647 0.685 N4 UZ6 17 UZ6 N N5 N 0 1 N N N N N N 15.986 5.475 11.195 2.719 4.766 1.740 N UZ6 18 UZ6 C C10 C 0 1 N N N N N N 17.120 3.356 10.544 1.597 6.179 3.391 C UZ6 19 UZ6 O O5 O 0 1 N N N N N N 16.553 4.846 13.308 2.351 4.667 -0.448 O UZ6 20 UZ6 C10 C11 C 0 1 Y N N N N N 20.937 11.212 13.045 4.795 -3.172 0.433 C10 UZ6 21 UZ6 C11 C12 C 0 1 Y N N N N N 23.087 11.604 12.796 6.170 -4.853 1.190 C11 UZ6 22 UZ6 C12 C13 C 0 1 Y N N N N N 21.643 13.136 11.835 3.898 -5.259 1.250 C12 UZ6 23 UZ6 C13 C14 C 0 1 N N N N N N 17.389 11.053 12.955 2.038 -1.081 -0.552 C13 UZ6 24 UZ6 C14 C15 C 0 1 N N N N N N 16.220 10.815 12.942 1.302 -0.246 -0.925 C14 UZ6 25 UZ6 C15 C16 C 0 1 N N N N N N 14.801 10.433 13.026 0.379 0.800 -1.394 C15 UZ6 26 UZ6 C16 C17 C 0 1 N N N N N N 13.114 8.819 12.474 0.231 1.883 0.767 C16 UZ6 27 UZ6 C17 C18 C 0 1 N N N N N N 13.258 7.736 13.503 -0.576 1.842 2.066 C17 UZ6 28 UZ6 C18 C19 C 0 1 N N N N N N 11.985 7.549 14.310 0.157 2.636 3.148 C18 UZ6 29 UZ6 C19 C20 C 0 1 N N N N N N 14.330 9.800 10.674 -1.620 2.026 -0.788 C19 UZ6 30 UZ6 C20 C21 C 0 1 N N R N N N 15.699 9.772 10.029 -2.597 1.157 -1.581 C20 UZ6 31 UZ6 C21 C22 C 0 1 N N R N N N 17.198 8.374 9.007 -4.568 0.007 -1.187 C21 UZ6 32 UZ6 C22 C23 C 0 1 N N R N N N 16.933 9.493 8.007 -5.018 1.436 -1.584 C22 UZ6 33 UZ6 C23 C24 C 0 1 N N S N N N 15.658 10.159 8.558 -3.718 2.034 -2.172 C23 UZ6 34 UZ6 C24 C25 C 0 1 Y N N N N N 16.203 6.470 7.669 -5.226 -0.381 1.218 C24 UZ6 35 UZ6 C25 C26 C 0 1 Y N N N N N 17.830 5.106 7.629 -7.042 -1.546 0.999 C25 UZ6 36 UZ6 C26 C27 C 0 1 Y N N N N N 18.256 6.190 8.375 -6.570 -1.259 -0.293 C26 UZ6 37 UZ6 C27 C28 C 0 1 Y N N N N N 20.263 5.325 8.657 -8.354 -2.404 -1.180 C27 UZ6 38 UZ6 C28 C29 C 0 1 Y N N N N N 18.766 4.069 7.425 -8.223 -2.296 1.122 C28 UZ6 39 UZ6 N10 N6 N 0 1 Y N N N N N 16.530 5.295 7.185 -6.179 -0.976 1.875 N10 UZ6 40 UZ6 N11 N7 N 0 1 Y N N N N N 19.462 6.362 8.925 -7.252 -1.704 -1.343 N11 UZ6 41 UZ6 N12 N8 N 0 1 Y N N N N N 19.996 4.216 7.958 -8.836 -2.699 0.014 N12 UZ6 42 UZ6 N13 N9 N 0 1 N N N N N N 18.509 2.970 6.709 -8.736 -2.610 2.369 N13 UZ6 43 UZ6 N5 N10 N 0 1 Y N N N N N 22.902 12.721 12.087 5.151 -5.645 1.468 N5 UZ6 44 UZ6 N6 N11 N 0 1 N N N N N N 21.475 14.281 11.167 2.837 -6.096 1.545 N6 UZ6 45 UZ6 N7 N12 N 0 1 N N N N N N 14.409 9.393 12.092 -0.513 1.194 -0.295 N7 UZ6 46 UZ6 N8 N13 N 0 1 N N N N N N 12.270 6.863 15.597 -0.618 2.597 4.395 N8 UZ6 47 UZ6 N9 N14 N 0 1 Y N N N N N 17.196 7.063 8.401 -5.422 -0.526 -0.123 N9 UZ6 48 UZ6 O2 O6 O 0 1 N N N N N N 19.659 10.132 16.503 5.944 -1.449 -2.734 O2 UZ6 49 UZ6 O6 O7 O 0 1 N N N N N N 15.677 11.564 8.373 -3.726 1.942 -3.598 O6 UZ6 50 UZ6 H17 H1 H 0 1 N N N N N N 16.529 7.680 11.969 4.310 2.892 1.146 H17 UZ6 51 UZ6 H3 H2 H 0 1 N N N N N N 17.856 7.825 16.428 4.629 1.304 -2.952 H3 UZ6 52 UZ6 H14 H3 H 0 1 N N N N N N 15.317 4.167 9.698 1.998 6.694 1.337 H14 UZ6 53 UZ6 H15 H4 H 0 1 N N N N N N 15.149 3.561 11.380 0.745 5.448 1.553 H15 UZ6 54 UZ6 H35 H5 H 0 1 N N N N N N 17.903 11.061 7.358 -6.366 2.260 -2.851 H35 UZ6 55 UZ6 H1 H6 H 0 1 N N N N N N 20.696 9.093 14.458 6.137 -0.958 -0.216 H1 UZ6 56 UZ6 H2 H7 H 0 1 N N N N N N 17.909 9.993 15.345 3.970 -0.880 -2.391 H2 UZ6 57 UZ6 H H8 H 0 1 N N N N N N 18.774 6.487 14.226 5.934 1.872 -0.405 H UZ6 58 UZ6 H19 H9 H 0 1 N N N N N N 16.542 8.564 14.129 2.996 2.091 -1.208 H19 UZ6 59 UZ6 H18 H10 H 0 1 N N N N N N 16.387 6.902 14.794 4.244 3.276 -1.663 H18 UZ6 60 UZ6 H21 H11 H 0 1 N N N N N N 19.781 6.515 16.371 6.885 0.695 -3.446 H21 UZ6 61 UZ6 H16 H12 H 0 1 N N N N N N 15.805 6.246 10.585 3.235 4.462 2.503 H16 UZ6 62 UZ6 H12 H13 H 0 1 N N N N N N 16.925 2.344 10.160 2.560 6.544 3.748 H12 UZ6 63 UZ6 H11 H14 H 0 1 N N N N N N 17.777 3.893 9.844 0.845 6.958 3.517 H11 UZ6 64 UZ6 H13 H15 H 0 1 N N N N N N 17.609 3.287 11.527 1.308 5.298 3.963 H13 UZ6 65 UZ6 H22 H16 H 0 1 N N N N N N 24.116 11.331 12.976 7.172 -5.207 1.383 H22 UZ6 66 UZ6 H25 H17 H 0 1 N N N N N N 14.600 10.074 14.046 0.951 1.667 -1.726 H25 UZ6 67 UZ6 H26 H18 H 0 1 N N N N N N 14.191 11.326 12.824 -0.214 0.417 -2.224 H26 UZ6 68 UZ6 H27 H19 H 0 1 N N N N N N 12.480 9.618 12.886 0.401 2.920 0.477 H27 UZ6 69 UZ6 H28 H20 H 0 1 N N N N N N 12.635 8.396 11.578 1.190 1.387 0.919 H28 UZ6 70 UZ6 H30 H21 H 0 1 N N N N N N 13.498 6.791 12.994 -1.560 2.280 1.896 H30 UZ6 71 UZ6 H29 H22 H 0 1 N N N N N N 14.077 8.002 14.187 -0.691 0.807 2.389 H29 UZ6 72 UZ6 H31 H23 H 0 1 N N N N N N 11.542 8.534 14.517 1.141 2.198 3.317 H31 UZ6 73 UZ6 H32 H24 H 0 1 N N N N N N 11.275 6.943 13.728 0.272 3.671 2.824 H32 UZ6 74 UZ6 H33 H25 H 0 1 N N N N N N 13.664 9.108 10.137 -1.225 2.810 -1.433 H33 UZ6 75 UZ6 H34 H26 H 0 1 N N N N N N 13.924 10.821 10.614 -2.139 2.477 0.058 H34 UZ6 76 UZ6 H7 H27 H 0 1 N N N N N N 16.391 10.430 10.575 -2.068 0.639 -2.381 H7 UZ6 77 UZ6 H8 H28 H 0 1 N N N N N N 18.176 8.556 9.477 -4.577 -0.653 -2.055 H8 UZ6 78 UZ6 H9 H29 H 0 1 N N N N N N 16.729 9.067 7.014 -5.345 1.998 -0.708 H9 UZ6 79 UZ6 H10 H30 H 0 1 N N N N N N 14.775 9.708 8.081 -3.597 3.070 -1.857 H10 UZ6 80 UZ6 H37 H31 H 0 1 N N N N N N 15.239 6.927 7.505 -4.403 0.154 1.669 H37 UZ6 81 UZ6 H38 H32 H 0 1 N N N N N N 21.263 5.392 9.060 -8.885 -2.750 -2.054 H38 UZ6 82 UZ6 H40 H33 H 0 1 N N N N N N 19.325 2.392 6.680 -8.279 -2.311 3.171 H40 UZ6 83 UZ6 H39 H34 H 0 1 N N N N N N 17.757 2.465 7.133 -9.552 -3.129 2.441 H39 UZ6 84 UZ6 H24 H35 H 0 1 N N N N N N 22.368 14.673 10.946 1.928 -5.802 1.382 H24 UZ6 85 UZ6 H23 H36 H 0 1 N N N N N N 20.971 14.103 10.322 3.003 -6.977 1.916 H23 UZ6 86 UZ6 H6 H38 H 0 1 N N N N N N 11.420 6.751 16.111 -0.154 3.115 5.126 H6 UZ6 87 UZ6 H4 H39 H 0 1 N N N N N N 12.670 5.965 15.414 -1.556 2.939 4.249 H4 UZ6 88 UZ6 H20 H41 H 0 1 N N N N N N 19.162 10.182 17.311 5.910 -1.363 -3.697 H20 UZ6 89 UZ6 H36 H42 H 0 1 N N N N N N 14.878 11.941 8.723 -4.447 2.429 -4.020 H36 UZ6 90 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UZ6 C C1 SING N N 1 UZ6 C1 N SING N N 2 UZ6 N C2 SING N N 3 UZ6 C2 O DOUB N N 4 UZ6 N1 C2 SING N N 5 UZ6 C3 N1 SING N N 6 UZ6 C4 C3 SING N N 7 UZ6 C4 O1 SING N N 8 UZ6 O1 C5 SING N N 9 UZ6 C5 C6 SING N N 10 UZ6 O2 C6 SING N N 11 UZ6 C6 C7 SING N N 12 UZ6 C7 C4 SING N N 13 UZ6 O3 C7 SING N N 14 UZ6 N2 C5 SING N N 15 UZ6 N2 C8 SING Y N 16 UZ6 C8 N3 DOUB Y N 17 UZ6 N3 C9 SING Y N 18 UZ6 C9 C10 DOUB Y N 19 UZ6 C10 N2 SING Y N 20 UZ6 N4 C10 SING Y N 21 UZ6 C11 N4 DOUB Y N 22 UZ6 N5 C11 SING Y N 23 UZ6 C12 N5 DOUB Y N 24 UZ6 C9 C12 SING Y N 25 UZ6 N6 C12 SING N N 26 UZ6 C13 C8 SING N N 27 UZ6 C14 C13 TRIP N N 28 UZ6 C15 C14 SING N N 29 UZ6 N7 C15 SING N N 30 UZ6 C16 N7 SING N N 31 UZ6 C17 C16 SING N N 32 UZ6 C18 C17 SING N N 33 UZ6 N8 C18 SING N N 34 UZ6 C19 N7 SING N N 35 UZ6 C20 C19 SING N N 36 UZ6 C20 O4 SING N N 37 UZ6 O4 C21 SING N N 38 UZ6 C21 C22 SING N N 39 UZ6 O5 C22 SING N N 40 UZ6 C22 C23 SING N N 41 UZ6 C23 C20 SING N N 42 UZ6 O6 C23 SING N N 43 UZ6 N9 C21 SING N N 44 UZ6 N9 C24 SING Y N 45 UZ6 C24 N10 DOUB Y N 46 UZ6 N10 C25 SING Y N 47 UZ6 C25 C26 DOUB Y N 48 UZ6 C26 N9 SING Y N 49 UZ6 N11 C26 SING Y N 50 UZ6 C27 N11 DOUB Y N 51 UZ6 N12 C27 SING Y N 52 UZ6 C28 N12 DOUB Y N 53 UZ6 C25 C28 SING Y N 54 UZ6 N13 C28 SING N N 55 UZ6 N1 H17 SING N N 56 UZ6 C7 H3 SING N N 57 UZ6 C1 H14 SING N N 58 UZ6 C1 H15 SING N N 59 UZ6 O5 H35 SING N N 60 UZ6 C5 H1 SING N N 61 UZ6 C6 H2 SING N N 62 UZ6 C4 H SING N N 63 UZ6 C3 H19 SING N N 64 UZ6 C3 H18 SING N N 65 UZ6 O3 H21 SING N N 66 UZ6 N H16 SING N N 67 UZ6 C H12 SING N N 68 UZ6 C H11 SING N N 69 UZ6 C H13 SING N N 70 UZ6 C11 H22 SING N N 71 UZ6 C15 H25 SING N N 72 UZ6 C15 H26 SING N N 73 UZ6 C16 H27 SING N N 74 UZ6 C16 H28 SING N N 75 UZ6 C17 H30 SING N N 76 UZ6 C17 H29 SING N N 77 UZ6 C18 H31 SING N N 78 UZ6 C18 H32 SING N N 79 UZ6 C19 H33 SING N N 80 UZ6 C19 H34 SING N N 81 UZ6 C20 H7 SING N N 82 UZ6 C21 H8 SING N N 83 UZ6 C22 H9 SING N N 84 UZ6 C23 H10 SING N N 85 UZ6 C24 H37 SING N N 86 UZ6 C27 H38 SING N N 87 UZ6 N13 H40 SING N N 88 UZ6 N13 H39 SING N N 89 UZ6 N6 H24 SING N N 90 UZ6 N6 H23 SING N N 91 UZ6 N8 H6 SING N N 92 UZ6 N8 H4 SING N N 93 UZ6 O2 H20 SING N N 94 UZ6 O6 H36 SING N N 95 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UZ6 InChI InChI 1.06 "InChI=1S/C29H40N14O7/c1-2-33-29(48)34-9-14-19(44)22(47)28(49-14)43-16(40-18-24(32)36-12-38-26(18)43)5-3-7-41(8-4-6-30)10-15-20(45)21(46)27(50-15)42-13-39-17-23(31)35-11-37-25(17)42/h11-15,19-22,27-28,44-47H,2,4,6-10,30H2,1H3,(H2,31,35,37)(H2,32,36,38)(H2,33,34,48)/t14-,15-,19-,20-,21-,22-,27-,28-/m1/s1" UZ6 InChIKey InChI 1.06 NLIDPGPXZZCUQI-VYHVXXRISA-N UZ6 SMILES_CANONICAL CACTVS 3.385 "CCNC(=O)NC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2c(nc3c(N)ncnc23)C#CCN(CCCN)C[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56" UZ6 SMILES CACTVS 3.385 "CCNC(=O)NC[CH]1O[CH]([CH](O)[CH]1O)n2c(nc3c(N)ncnc23)C#CCN(CCCN)C[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56" UZ6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCNC(=O)NC[C@@H]1[C@H]([C@H]([C@@H](O1)n2c(nc3c2ncnc3N)C#CCN(CCCN)C[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O)O)O" UZ6 SMILES "OpenEye OEToolkits" 2.0.7 "CCNC(=O)NCC1C(C(C(O1)n2c(nc3c2ncnc3N)C#CCN(CCCN)CC4C(C(C(O4)n5cnc6c5ncnc6N)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id UZ6 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[[(2~{R},3~{S},4~{R},5~{R})-5-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(3-azanylpropyl)amino]prop-1-ynyl]-6-azanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-3-ethyl-urea" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UZ6 "Create component" 2023-09-07 PDBE UZ6 "Initial release" 2025-03-19 RCSB #