data_UZJ # _chem_comp.id UZJ _chem_comp.name 2-deoxy-beta-D-ribopyranose _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C5 H10 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms 2-deoxy-beta-D-erythro-pentopyranose _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-06-09 _chem_comp.pdbx_modified_date 2021-05-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 134.130 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UZJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6X9P _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UZJ C4 C1 C 0 1 N N R 22.972 0.280 69.618 -1.261 -0.448 -0.514 C4 UZJ 1 UZJ C5 C2 C 0 1 N N N 21.642 -0.313 69.215 -0.465 -1.338 0.444 C5 UZJ 2 UZJ C1 C3 C 0 1 N N R 21.351 -0.777 71.639 1.482 0.048 0.235 C1 UZJ 3 UZJ C2 C4 C 0 1 N N N 22.842 -0.695 71.860 0.764 0.994 -0.731 C2 UZJ 4 UZJ C3 C5 C 0 1 N N S 23.641 -0.493 70.658 -0.736 0.988 -0.419 C3 UZJ 5 UZJ O1 O1 O 0 1 N N N 20.634 -1.687 72.324 2.874 0.004 -0.086 O1 UZJ 6 UZJ O3 O2 O 0 1 N N N 24.932 0.090 70.987 -0.951 1.490 0.901 O3 UZJ 7 UZJ O4 O3 O 0 1 N N N 22.837 1.630 70.012 -2.643 -0.475 -0.154 O4 UZJ 8 UZJ O5 O4 O 0 1 N N N 20.781 -0.348 70.401 0.925 -1.263 0.118 O5 UZJ 9 UZJ H41 H1 H 0 1 N N N 23.614 0.251 68.725 -1.143 -0.812 -1.534 H41 UZJ 10 UZJ H51 H3 H 0 1 N N N 21.790 -1.333 68.831 -0.617 -0.997 1.468 H51 UZJ 11 UZJ H52 H4 H 0 1 N N N 21.178 0.309 68.435 -0.805 -2.369 0.350 H52 UZJ 12 UZJ H11 H6 H 0 1 N N N 21.079 0.107 72.234 1.355 0.407 1.256 H11 UZJ 13 UZJ H22 H7 H 0 1 N N N 23.168 -1.635 72.330 1.157 2.003 -0.612 H22 UZJ 14 UZJ H23 H8 H 0 1 N N N 23.038 0.144 72.543 0.925 0.659 -1.756 H23 UZJ 15 UZJ H31 H9 H 0 1 N N N 23.839 -1.489 70.236 -1.261 1.617 -1.138 H31 UZJ 16 UZJ H12 H10 H 0 1 N N N 21.089 -1.910 73.127 3.392 -0.577 0.487 H12 UZJ 17 UZJ H32 H11 H 0 1 N N N 25.350 -0.428 71.665 -0.642 2.397 1.033 H32 UZJ 18 UZJ H42 H12 H 0 1 N N N 22.400 2.119 69.325 -3.042 -1.356 -0.191 H42 UZJ 19 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UZJ C5 O5 SING N N 1 UZJ C4 O4 SING N N 2 UZJ C4 C3 SING N N 3 UZJ O5 C1 SING N N 4 UZJ C3 O3 SING N N 5 UZJ C3 C2 SING N N 6 UZJ C1 C2 SING N N 7 UZJ C1 O1 SING N N 8 UZJ C4 H41 SING N N 9 UZJ C5 H51 SING N N 10 UZJ C5 H52 SING N N 11 UZJ C1 H11 SING N N 12 UZJ C2 H22 SING N N 13 UZJ C2 H23 SING N N 14 UZJ C3 H31 SING N N 15 UZJ O1 H12 SING N N 16 UZJ O3 H32 SING N N 17 UZJ O4 H42 SING N N 18 UZJ C4 C5 SING N N 19 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UZJ SMILES ACDLabs 12.01 "C1(O)C(CC(O)OC1)O" UZJ InChI InChI 1.03 "InChI=1S/C5H10O4/c6-3-1-5(8)9-2-4(3)7/h3-8H,1-2H2/t3-,4+,5+/m0/s1" UZJ InChIKey InChI 1.03 ZVQAVWAHRUNNPG-VPENINKCSA-N UZJ SMILES_CANONICAL CACTVS 3.385 "O[C@H]1C[C@H](O)[C@H](O)CO1" UZJ SMILES CACTVS 3.385 "O[CH]1C[CH](O)[CH](O)CO1" UZJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@@H]([C@@H](CO[C@H]1O)O)O" UZJ SMILES "OpenEye OEToolkits" 2.0.7 "C1C(C(COC1O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier UZJ "SYSTEMATIC NAME" ACDLabs 12.01 2-deoxy-beta-D-erythro-pentopyranose UZJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},4~{S},5~{R})-oxane-2,4,5-triol" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id UZJ _pdbx_chem_comp_synonyms.name 2-deoxy-beta-D-erythro-pentopyranose _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UZJ "Create component" 2020-06-09 RCSB UZJ "Modify synonyms" 2021-03-01 PDBE UZJ "Initial release" 2021-06-02 RCSB ##