data_UZO # _chem_comp.id UZO _chem_comp.name "1-[[(2~{R},3~{S},4~{R},5~{R})-5-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(3-azanylpropyl)amino]prop-1-ynyl]-6-azanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-3-(phenylmethyl)urea" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H42 N14 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-07 _chem_comp.pdbx_modified_date 2025-03-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 758.787 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UZO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QGI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UZO N1 N1 N 0 1 N N N N N N 14.139 9.435 11.968 -2.217 -2.991 -0.987 N1 UZO 1 UZO C7 C1 C 0 1 Y N N N N N 20.296 12.388 12.273 4.606 -4.295 -0.987 C7 UZO 2 UZO C8 C2 C 0 1 Y N N N N N 21.344 13.174 11.758 5.917 -4.758 -1.201 C8 UZO 3 UZO N2 N2 N 0 1 Y N N N N N 18.916 12.492 12.161 3.399 -4.590 -1.519 N2 UZO 4 UZO C9 C3 C 0 1 Y N N N N N 22.801 11.672 12.742 6.660 -3.305 0.432 C9 UZO 5 UZO O1 O1 O 0 1 N N N N N N 15.914 5.046 13.090 5.473 2.918 2.497 O1 UZO 6 UZO C1 C4 C 0 1 N N N N N N 11.757 9.268 12.750 -2.369 -1.334 -2.783 C1 UZO 7 UZO O5 O2 O 0 1 N N N N N N 17.800 10.385 7.902 -7.676 -1.427 0.947 O5 UZO 8 UZO C5 C5 C 0 1 N N N N N N 17.088 11.073 12.889 1.080 -3.889 -1.258 C5 UZO 9 UZO C6 C6 C 0 1 Y N N N N N 18.459 11.443 12.817 2.478 -3.850 -0.948 C6 UZO 10 UZO N3 N3 N 0 1 N N N N N N 21.159 14.278 11.024 6.178 -5.733 -2.147 N3 UZO 11 UZO C4 C7 C 0 1 N N N N N N 15.911 10.873 12.871 -0.066 -3.920 -1.511 C4 UZO 12 UZO O4 O3 O 0 1 N N N N N N 15.846 8.439 9.855 -4.230 -1.088 -0.007 O4 UZO 13 UZO C3 C8 C 0 1 N N N N N N 14.484 10.512 12.892 -1.503 -3.960 -1.829 C3 UZO 14 UZO O3 O4 O 0 1 N N N N N N 19.312 10.215 16.510 1.102 -3.162 2.620 O3 UZO 15 UZO C2 C9 C 0 1 N N N N N N 13.049 8.552 12.404 -1.875 -1.613 -1.363 C2 UZO 16 UZO N4 N4 N 0 1 Y N N N N N 22.609 12.777 12.017 6.899 -4.236 -0.473 N4 UZO 17 UZO N N5 N 0 1 N N N N N N 11.284 7.533 14.462 -2.552 0.397 -4.507 N UZO 18 UZO C C10 C 0 1 N N N N N N 10.728 8.335 13.362 -1.982 0.090 -3.188 C UZO 19 UZO O O5 O 0 1 N N N N N N 18.668 8.458 13.443 3.095 -0.814 0.872 O UZO 20 UZO C10 C11 C 0 1 Y N N N N N 20.650 11.272 13.011 4.404 -3.302 -0.011 C10 UZO 21 UZO C11 C12 C 0 1 N N S N N N 19.325 9.470 14.185 2.368 -2.062 0.842 C11 UZO 22 UZO C12 C13 C 0 1 N N R N N N 17.893 7.631 14.345 2.643 -0.139 2.066 C12 UZO 23 UZO C13 C14 C 0 1 N N N N N N 16.426 7.650 13.959 3.661 0.918 2.498 C13 UZO 24 UZO C14 C15 C 0 1 N N N N N N 15.835 5.965 12.277 4.675 2.935 1.580 C14 UZO 25 UZO C15 C16 C 0 1 N N N N N N 14.840 4.506 10.570 5.694 5.010 0.809 C15 UZO 26 UZO C16 C17 C 0 1 Y N N N N N 13.456 4.624 9.978 5.511 6.000 -0.312 C16 UZO 27 UZO C17 C18 C 0 1 Y N N N N N 12.472 5.369 10.614 4.664 7.080 -0.150 C17 UZO 28 UZO C18 C19 C 0 1 Y N N N N N 11.208 5.491 10.061 4.497 7.988 -1.179 C18 UZO 29 UZO C19 C20 C 0 1 Y N N N N N 10.910 4.871 8.868 5.177 7.816 -2.370 C19 UZO 30 UZO C20 C21 C 0 1 Y N N N N N 11.875 4.126 8.227 6.025 6.736 -2.532 C20 UZO 31 UZO C21 C22 C 0 1 Y N N N N N 13.140 4.002 8.779 6.196 5.830 -1.502 C21 UZO 32 UZO C22 C23 C 0 1 N N S N N N 18.202 8.151 15.748 2.538 -1.252 3.133 C22 UZO 33 UZO C23 C24 C 0 1 N N R N N N 18.530 9.618 15.478 2.353 -2.546 2.309 C23 UZO 34 UZO C24 C25 C 0 1 N N N N N N 14.014 9.849 10.563 -3.669 -3.209 -1.050 C24 UZO 35 UZO C25 C26 C 0 1 N N S N N N 15.356 9.792 9.856 -4.341 -2.514 0.135 C25 UZO 36 UZO C26 C27 C 0 1 N N S N N N 16.895 8.371 8.906 -5.433 -0.514 0.548 C26 UZO 37 UZO C27 C28 C 0 1 N N R N N N 16.677 9.507 7.888 -6.547 -1.480 0.072 C27 UZO 38 UZO C28 C29 C 0 1 N N S N N N 15.386 10.182 8.383 -5.843 -2.856 0.161 C28 UZO 39 UZO C29 C30 C 0 1 Y N N N N N 15.919 6.438 7.581 -5.177 1.323 -1.164 C29 UZO 40 UZO C30 C31 C 0 1 Y N N N N N 17.545 5.074 7.556 -6.320 2.930 -0.263 C30 UZO 41 UZO C31 C32 C 0 1 Y N N N N N 18.472 4.030 7.378 -6.994 4.108 0.102 C31 UZO 42 UZO C32 C33 C 0 1 Y N N N N N 19.948 5.270 8.653 -7.698 3.064 2.037 C32 UZO 43 UZO C33 C34 C 0 1 Y N N N N N 17.963 6.159 8.310 -6.388 1.830 0.608 C33 UZO 44 UZO N10 N6 N 0 1 Y N N N N N 16.248 5.263 7.102 -5.571 2.553 -1.327 N10 UZO 45 UZO N11 N7 N 0 1 N N N N N N 18.220 2.919 6.679 -6.963 5.224 -0.715 N11 UZO 46 UZO N12 N8 N 0 1 Y N N N N N 19.689 4.166 7.947 -7.662 4.125 1.252 N12 UZO 47 UZO N13 N9 N 0 1 Y N N N N N 19.154 6.317 8.893 -7.081 1.941 1.736 N13 UZO 48 UZO N5 N10 N 0 1 Y N N N N N 21.892 10.857 13.286 5.450 -2.841 0.666 N5 UZO 49 UZO N6 N11 N 0 1 Y N N N N N 19.461 10.667 13.370 3.058 -3.034 -0.009 N6 UZO 50 UZO N7 N12 N 0 1 N N N N N N 16.179 7.232 12.586 3.763 1.950 1.463 N7 UZO 51 UZO N8 N13 N 0 1 N N N N N N 15.374 5.783 11.021 4.702 3.939 0.682 N8 UZO 52 UZO N9 N14 N 0 1 Y N N N N N 16.909 7.040 8.313 -5.655 0.833 0.015 N9 UZO 53 UZO O2 O6 O 0 1 N N N N N N 19.320 7.461 16.296 1.409 -1.028 3.980 O2 UZO 54 UZO O6 O7 O 0 1 N N N N N N 15.437 11.596 8.225 -6.186 -3.515 1.381 O6 UZO 55 UZO H20 H2 H 0 1 N N N N N N 23.832 11.400 12.912 7.488 -2.908 1.000 H20 UZO 56 UZO H13 H3 H 0 1 N N N N N N 11.337 9.704 11.832 -1.914 -2.044 -3.473 H13 UZO 57 UZO H12 H4 H 0 1 N N N N N N 11.979 10.071 13.469 -3.454 -1.439 -2.818 H12 UZO 58 UZO H36 H5 H 0 1 N N N N N N 17.664 11.084 7.274 -8.400 -2.015 0.690 H36 UZO 59 UZO H18 H6 H 0 1 N N N N N N 22.046 14.660 10.766 5.453 -6.106 -2.672 H18 UZO 60 UZO H19 H7 H 0 1 N N N N N N 20.643 14.047 10.199 7.087 -6.044 -2.285 H19 UZO 61 UZO H17 H8 H 0 1 N N N N N N 13.896 11.402 12.623 -1.889 -4.961 -1.640 H17 UZO 62 UZO H16 H9 H 0 1 N N N N N N 14.221 10.193 13.911 -1.649 -3.706 -2.879 H16 UZO 63 UZO H33 H10 H 0 1 N N N N N N 19.486 11.123 16.291 1.038 -3.485 3.529 H33 UZO 64 UZO H14 H11 H 0 1 N N N N N N 13.387 8.004 13.296 -2.350 -0.919 -0.670 H14 UZO 65 UZO H15 H12 H 0 1 N N N N N N 12.840 7.839 11.593 -0.793 -1.484 -1.323 H15 UZO 66 UZO H8 H13 H 0 1 N N N N N N 10.573 6.936 14.833 -3.552 0.266 -4.508 H8 UZO 67 UZO H43 H14 H 0 1 N N N N N N 12.041 6.976 14.119 -2.309 1.332 -4.796 H43 UZO 68 UZO H11 H16 H 0 1 N N N N N N 10.358 7.655 12.580 -2.368 0.795 -2.452 H11 UZO 69 UZO H10 H17 H 0 1 N N N N N N 9.892 8.936 13.750 -0.896 0.171 -3.234 H10 UZO 70 UZO H H18 H 0 1 N N N N N N 20.332 9.118 14.454 1.350 -1.899 0.485 H UZO 71 UZO H1 H19 H 0 1 N N N N N N 18.252 6.593 14.279 1.669 0.320 1.897 H1 UZO 72 UZO H22 H20 H 0 1 N N N N N N 15.880 6.972 14.632 3.338 1.373 3.434 H22 UZO 73 UZO H21 H21 H 0 1 N N N N N N 16.047 8.675 14.084 4.635 0.449 2.640 H21 UZO 74 UZO H26 H22 H 0 1 N N N N N N 15.515 4.094 9.805 6.696 4.585 0.759 H26 UZO 75 UZO H25 H23 H 0 1 N N N N N N 14.797 3.820 11.429 5.561 5.516 1.765 H25 UZO 76 UZO H27 H24 H 0 1 N N N N N N 12.695 5.859 11.550 4.133 7.214 0.780 H27 UZO 77 UZO H28 H25 H 0 1 N N N N N N 10.453 6.075 10.567 3.835 8.831 -1.053 H28 UZO 78 UZO H29 H26 H 0 1 N N N N N N 9.924 4.968 8.437 5.046 8.524 -3.174 H29 UZO 79 UZO H30 H27 H 0 1 N N N N N N 11.645 3.637 7.292 6.556 6.601 -3.463 H30 UZO 80 UZO H31 H28 H 0 1 N N N N N N 13.889 3.414 8.270 6.858 4.987 -1.628 H31 UZO 81 UZO H2 H29 H 0 1 N N N N N N 17.313 8.069 16.391 3.453 -1.303 3.723 H2 UZO 82 UZO H3 H30 H 0 1 N N N N N N 17.605 10.184 15.291 3.175 -3.238 2.491 H3 UZO 83 UZO H35 H31 H 0 1 N N N N N N 13.309 9.177 10.052 -4.058 -2.796 -1.981 H35 UZO 84 UZO H34 H32 H 0 1 N N N N N N 13.631 10.879 10.525 -3.878 -4.278 -1.011 H34 UZO 85 UZO H4 H33 H 0 1 N N N N N N 16.062 10.437 10.399 -3.871 -2.831 1.066 H4 UZO 86 UZO H5 H34 H 0 1 N N N N N N 17.857 8.548 9.409 -5.382 -0.493 1.636 H5 UZO 87 UZO H6 H35 H 0 1 N N N N N N 16.513 9.082 6.887 -6.842 -1.259 -0.954 H6 UZO 88 UZO H7 H36 H 0 1 N N N N N N 14.518 9.751 7.863 -6.108 -3.476 -0.696 H7 UZO 89 UZO H38 H37 H 0 1 N N N N N N 14.953 6.892 7.414 -4.565 0.771 -1.862 H38 UZO 90 UZO H41 H38 H 0 1 N N N N N N 20.934 5.323 9.090 -8.252 3.121 2.962 H41 UZO 91 UZO H39 H39 H 0 1 N N N N N N 19.026 2.328 6.690 -6.472 5.200 -1.551 H39 UZO 92 UZO H40 H40 H 0 1 N N N N N N 17.446 2.436 7.089 -7.432 6.031 -0.452 H40 UZO 93 UZO H23 H41 H 0 1 N N N N N N 16.267 7.904 11.851 3.174 1.924 0.693 H23 UZO 94 UZO H24 H42 H 0 1 N N N N N N 15.400 6.550 10.380 4.065 3.953 -0.050 H24 UZO 95 UZO H32 H43 H 0 1 N N N N N N 19.502 7.793 17.167 1.296 -1.698 4.668 H32 UZO 96 UZO H37 H44 H 0 1 N N N N N N 14.627 11.980 8.539 -7.130 -3.702 1.476 H37 UZO 97 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UZO N C SING N N 1 UZO C C1 SING N N 2 UZO C1 C2 SING N N 3 UZO C2 N1 SING N N 4 UZO N1 C3 SING N N 5 UZO C3 C4 SING N N 6 UZO C4 C5 TRIP N N 7 UZO C5 C6 SING N N 8 UZO C6 N2 DOUB Y N 9 UZO N2 C7 SING Y N 10 UZO C7 C8 DOUB Y N 11 UZO N3 C8 SING N N 12 UZO C8 N4 SING Y N 13 UZO N4 C9 DOUB Y N 14 UZO C9 N5 SING Y N 15 UZO N5 C10 DOUB Y N 16 UZO C7 C10 SING Y N 17 UZO C10 N6 SING Y N 18 UZO C6 N6 SING Y N 19 UZO N6 C11 SING N N 20 UZO C11 O SING N N 21 UZO O C12 SING N N 22 UZO C12 C13 SING N N 23 UZO C13 N7 SING N N 24 UZO N7 C14 SING N N 25 UZO C14 O1 DOUB N N 26 UZO N8 C14 SING N N 27 UZO C15 N8 SING N N 28 UZO C16 C15 SING N N 29 UZO C16 C17 DOUB Y N 30 UZO C17 C18 SING Y N 31 UZO C18 C19 DOUB Y N 32 UZO C19 C20 SING Y N 33 UZO C20 C21 DOUB Y N 34 UZO C21 C16 SING Y N 35 UZO C22 C12 SING N N 36 UZO O2 C22 SING N N 37 UZO C23 C22 SING N N 38 UZO C11 C23 SING N N 39 UZO O3 C23 SING N N 40 UZO C24 N1 SING N N 41 UZO C25 C24 SING N N 42 UZO C25 O4 SING N N 43 UZO O4 C26 SING N N 44 UZO C26 C27 SING N N 45 UZO O5 C27 SING N N 46 UZO C27 C28 SING N N 47 UZO C28 C25 SING N N 48 UZO O6 C28 SING N N 49 UZO N9 C26 SING N N 50 UZO N9 C29 SING Y N 51 UZO C29 N10 DOUB Y N 52 UZO N10 C30 SING Y N 53 UZO C30 C31 DOUB Y N 54 UZO N11 C31 SING N N 55 UZO C31 N12 SING Y N 56 UZO N12 C32 DOUB Y N 57 UZO C32 N13 SING Y N 58 UZO N13 C33 DOUB Y N 59 UZO C33 N9 SING Y N 60 UZO C30 C33 SING Y N 61 UZO C9 H20 SING N N 62 UZO C1 H13 SING N N 63 UZO C1 H12 SING N N 64 UZO O5 H36 SING N N 65 UZO N3 H18 SING N N 66 UZO N3 H19 SING N N 67 UZO C3 H17 SING N N 68 UZO C3 H16 SING N N 69 UZO O3 H33 SING N N 70 UZO C2 H14 SING N N 71 UZO C2 H15 SING N N 72 UZO N H8 SING N N 73 UZO N H43 SING N N 74 UZO C H11 SING N N 75 UZO C H10 SING N N 76 UZO C11 H SING N N 77 UZO C12 H1 SING N N 78 UZO C13 H22 SING N N 79 UZO C13 H21 SING N N 80 UZO C15 H26 SING N N 81 UZO C15 H25 SING N N 82 UZO C17 H27 SING N N 83 UZO C18 H28 SING N N 84 UZO C19 H29 SING N N 85 UZO C20 H30 SING N N 86 UZO C21 H31 SING N N 87 UZO C22 H2 SING N N 88 UZO C23 H3 SING N N 89 UZO C24 H35 SING N N 90 UZO C24 H34 SING N N 91 UZO C25 H4 SING N N 92 UZO C26 H5 SING N N 93 UZO C27 H6 SING N N 94 UZO C28 H7 SING N N 95 UZO C29 H38 SING N N 96 UZO C32 H41 SING N N 97 UZO N11 H39 SING N N 98 UZO N11 H40 SING N N 99 UZO N7 H23 SING N N 100 UZO N8 H24 SING N N 101 UZO O2 H32 SING N N 102 UZO O6 H37 SING N N 103 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UZO InChI InChI 1.06 "InChI=1S/C34H42N14O7/c35-9-5-11-46(14-20-25(50)26(51)32(55-20)47-17-44-22-28(36)40-15-42-30(22)47)10-4-8-21-45-23-29(37)41-16-43-31(23)48(21)33-27(52)24(49)19(54-33)13-39-34(53)38-12-18-6-2-1-3-7-18/h1-3,6-7,15-17,19-20,24-27,32-33,49-52H,5,9-14,35H2,(H2,36,40,42)(H2,37,41,43)(H2,38,39,53)/t19-,20+,24-,25-,26-,27-,32+,33+/m1/s1" UZO InChIKey InChI 1.06 GGSIMEWGMXDKIG-CHNVMXDGSA-N UZO SMILES_CANONICAL CACTVS 3.385 "NCCCN(CC#Cc1nc2c(N)ncnc2n1[C@H]3O[C@H](CNC(=O)NCc4ccccc4)[C@@H](O)[C@H]3O)C[C@@H]5O[C@@H]([C@H](O)[C@@H]5O)n6cnc7c(N)ncnc67" UZO SMILES CACTVS 3.385 "NCCCN(CC#Cc1nc2c(N)ncnc2n1[CH]3O[CH](CNC(=O)NCc4ccccc4)[CH](O)[CH]3O)C[CH]5O[CH]([CH](O)[CH]5O)n6cnc7c(N)ncnc67" UZO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CNC(=O)NC[C@@H]2[C@H]([C@H]([C@@H](O2)n3c(nc4c3ncnc4N)C#CCN(CCCN)C[C@@H]5[C@H]([C@H]([C@@H](O5)n6cnc7c6ncnc7N)O)O)O)O" UZO SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CNC(=O)NCC2C(C(C(O2)n3c(nc4c3ncnc4N)C#CCN(CCCN)CC5C(C(C(O5)n6cnc7c6ncnc7N)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id UZO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[[(2~{R},3~{S},4~{R},5~{R})-5-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(3-azanylpropyl)amino]prop-1-ynyl]-6-azanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-3-(phenylmethyl)urea" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UZO "Create component" 2023-09-07 PDBE UZO "Initial release" 2025-03-19 RCSB #