data_V08 # _chem_comp.id V08 _chem_comp.name "(2 {R},3 {S})-3-methanoyl-4-methyl-2-hydroxy-pentanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H12 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-31 _chem_comp.pdbx_modified_date 2022-04-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 160.168 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V08 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7O2L _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V08 C4 C1 C 0 1 N N R 62.544 -138.427 41.421 -0.536 -0.848 0.178 C4 V08 1 V08 C7 C2 C 0 1 N N S 62.382 -136.953 41.745 0.567 0.140 -0.208 C7 V08 2 V08 C8 C3 C 0 1 N N N 63.304 -136.175 40.851 1.931 -0.457 0.146 C8 V08 3 V08 O8 O1 O 0 1 N N N 61.206 -140.376 41.731 -2.712 -0.014 0.531 O8 V08 4 V08 C3 C4 C 0 1 N N N 61.561 -139.284 42.233 -1.870 -0.315 -0.281 C3 V08 5 V08 O13 O2 O 0 1 N N N 61.168 -138.834 43.328 -2.121 -0.176 -1.592 O13 V08 6 V08 O5 O3 O 0 1 N N N 63.888 -138.792 41.718 -0.553 -1.013 1.597 O5 V08 7 V08 C37 C5 C 0 1 N N N 62.607 -136.027 39.511 2.129 -1.767 -0.619 C37 V08 8 V08 C9 C6 C 0 1 N N N 63.534 -134.813 41.469 3.034 0.530 -0.240 C9 V08 9 V08 C16 C7 C 0 1 N N N 62.819 -136.706 43.161 0.372 1.430 0.545 C16 V08 10 V08 O17 O4 O 0 1 N N N 62.105 -136.061 43.915 0.201 2.462 -0.059 O17 V08 11 V08 H1 H1 H 0 1 N N N 62.339 -138.579 40.351 -0.346 -1.810 -0.298 H1 V08 12 V08 H2 H2 H 0 1 N N N 61.338 -136.638 41.598 0.522 0.334 -1.279 H2 V08 13 V08 H3 H3 H 0 1 N N N 64.260 -136.705 40.727 1.976 -0.651 1.217 H3 V08 14 V08 H4 H4 H 0 1 N N N 60.558 -139.447 43.722 -2.990 0.170 -1.838 H4 V08 15 V08 H5 H5 H 0 1 N N N 64.017 -139.713 41.524 -0.717 -0.195 2.087 H5 V08 16 V08 H6 H6 H 0 1 N N N 62.444 -137.021 39.070 2.084 -1.573 -1.691 H6 V08 17 V08 H7 H7 H 0 1 N N N 61.638 -135.527 39.655 3.100 -2.192 -0.367 H7 V08 18 V08 H8 H8 H 0 1 N N N 63.234 -135.425 38.836 1.342 -2.470 -0.344 H8 V08 19 V08 H9 H9 H 0 1 N N N 64.039 -134.931 42.439 2.894 1.464 0.305 H9 V08 20 V08 H10 H10 H 0 1 N N N 64.163 -134.208 40.799 4.006 0.106 0.012 H10 V08 21 V08 H11 H11 H 0 1 N N N 62.567 -134.310 41.618 2.990 0.725 -1.312 H11 V08 22 V08 H12 H12 H 0 1 N N N 63.762 -137.098 43.512 0.386 1.433 1.625 H12 V08 23 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V08 C37 C8 SING N N 1 V08 C8 C9 SING N N 2 V08 C8 C7 SING N N 3 V08 C4 O5 SING N N 4 V08 C4 C7 SING N N 5 V08 C4 C3 SING N N 6 V08 O8 C3 DOUB N N 7 V08 C7 C16 SING N N 8 V08 C3 O13 SING N N 9 V08 C16 O17 DOUB N N 10 V08 C4 H1 SING N N 11 V08 C7 H2 SING N N 12 V08 C8 H3 SING N N 13 V08 O13 H4 SING N N 14 V08 O5 H5 SING N N 15 V08 C37 H6 SING N N 16 V08 C37 H7 SING N N 17 V08 C37 H8 SING N N 18 V08 C9 H9 SING N N 19 V08 C9 H10 SING N N 20 V08 C9 H11 SING N N 21 V08 C16 H12 SING N N 22 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V08 InChI InChI 1.03 "InChI=1S/C7H12O4/c1-4(2)5(3-8)6(9)7(10)11/h3-6,9H,1-2H3,(H,10,11)/t5-,6+/m0/s1" V08 InChIKey InChI 1.03 YIJPJSMEWHRJCU-NTSWFWBYSA-N V08 SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@H](C=O)[C@@H](O)C(O)=O" V08 SMILES CACTVS 3.385 "CC(C)[CH](C=O)[CH](O)C(O)=O" V08 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@H](C=O)[C@H](C(=O)O)O" V08 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C(C=O)C(C(=O)O)O" # _pdbx_chem_comp_identifier.comp_id V08 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{S})-3-methanoyl-4-methyl-2-oxidanyl-pentanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V08 "Create component" 2021-03-31 PDBE V08 "Modify name" 2021-07-07 PDBE V08 "Initial release" 2022-04-13 RCSB ##