data_V0A # _chem_comp.id V0A _chem_comp.name "(3E)-3-{(2E,4E,6R)-1-hydroxy-4-methyl-6-[(1R,3R,4S,5R)-1,4,8-trimethyl-2,9-dioxabicyclo[3.3.1]non-7-en-3-yl]hepta-2,4-dien-1-ylidene}-2H-pyrrole-2,4(3H)-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H27 N O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Tirandamycin C" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-06-09 _chem_comp.pdbx_modified_date 2021-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 385.453 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V0A _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6XA2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V0A C07 C1 C 0 1 N N S 32.157 -33.993 89.702 2.507 0.590 -1.054 C07 V0A 1 V0A C08 C2 C 0 1 N N R 33.139 -33.577 90.792 3.532 -0.098 -1.949 C08 V0A 2 V0A C09 C3 C 0 1 N N R 32.676 -34.965 88.632 2.991 0.594 0.398 C09 V0A 3 V0A C10 C4 C 0 1 N N R 34.831 -34.897 89.800 4.409 -1.263 -0.061 C10 V0A 4 V0A C11 C5 C 0 1 N N N 33.060 -34.446 92.051 4.774 0.765 -2.135 C11 V0A 5 V0A C12 C6 C 0 1 N N R 32.415 -34.409 87.227 1.869 1.090 1.311 C12 V0A 6 V0A C13 C7 C 0 1 N N N 34.672 -35.937 90.885 5.544 -0.271 -0.036 C13 V0A 7 V0A C14 C8 C 0 1 N N N 30.967 -34.630 90.391 2.309 2.032 -1.527 C14 V0A 8 V0A C15 C9 C 0 1 N N N 33.850 -35.723 91.919 5.694 0.634 -0.955 C15 V0A 9 V0A C16 C10 C 0 1 N N N 36.257 -34.831 89.267 4.879 -2.629 0.441 C16 V0A 10 V0A C17 C11 C 0 1 N N N 31.180 -35.062 86.607 2.378 1.162 2.752 C17 V0A 11 V0A C18 C12 C 0 1 N N N 33.644 -34.513 86.322 0.703 0.138 1.237 C18 V0A 12 V0A C19 C13 C 0 1 N N N 35.406 -37.240 90.804 6.539 -0.332 1.095 C19 V0A 13 V0A C20 C14 C 0 1 N N N 34.310 -35.576 85.812 -0.514 0.594 0.932 C20 V0A 14 V0A C21 C15 C 0 1 N N N 33.948 -37.010 86.069 -0.752 2.077 0.801 C21 V0A 15 V0A C22 C16 C 0 1 N N N 35.501 -35.317 84.977 -1.616 -0.343 0.724 C22 V0A 16 V0A C23 C17 C 0 1 N N N 36.048 -36.330 84.312 -2.852 0.121 0.414 C23 V0A 17 V0A C24 C18 C 0 1 N N N 37.259 -36.203 83.479 -3.916 -0.785 0.213 C24 V0A 18 V0A C25 C19 C 0 1 N N N 37.607 -37.319 82.547 -5.186 -0.308 -0.106 C25 V0A 19 V0A C26 C20 C 0 1 N N N 38.609 -37.410 81.484 -6.414 -1.089 -0.350 C26 V0A 20 V0A C27 C21 C 0 1 N N N 38.717 -38.731 80.787 -7.454 -0.056 -0.644 C27 V0A 21 V0A C28 C22 C 0 1 N N N 37.145 -38.734 82.503 -5.616 1.096 -0.270 C28 V0A 22 V0A N06 N1 N 0 1 N N N 37.701 -39.513 81.531 -6.920 1.118 -0.580 N06 V0A 23 V0A O01 O1 O 0 1 N N N 34.456 -33.599 90.257 3.905 -1.365 -1.399 O01 V0A 24 V0A O02 O2 O 0 1 N N N 34.048 -35.340 88.704 3.357 -0.742 0.768 O02 V0A 25 V0A O03 O3 O 0 1 N N N 38.017 -35.110 83.553 -3.703 -2.114 0.331 O03 V0A 26 V0A O04 O4 O 0 1 N N N 39.331 -36.404 81.145 -6.549 -2.296 -0.320 O04 V0A 27 V0A O05 O5 O 0 1 N N N 36.217 -39.181 83.271 -4.902 2.072 -0.148 O05 V0A 28 V0A H1 H1 H 0 1 N N N 31.810 -33.083 89.191 1.558 0.057 -1.115 H1 V0A 29 V0A H2 H2 H 0 1 N N N 32.891 -32.546 91.086 3.080 -0.277 -2.925 H2 V0A 30 V0A H3 H3 H 0 1 N N N 32.072 -35.880 88.723 3.857 1.249 0.492 H3 V0A 31 V0A H4 H4 H 0 1 N N N 33.456 -33.872 92.902 5.299 0.448 -3.036 H4 V0A 32 V0A H5 H5 H 0 1 N N N 32.006 -34.700 92.239 4.475 1.807 -2.242 H5 V0A 33 V0A H6 H6 H 0 1 N N N 32.190 -33.338 87.342 1.549 2.081 0.989 H6 V0A 34 V0A H7 H7 H 0 1 N N N 30.581 -33.947 91.162 2.110 2.039 -2.598 H7 V0A 35 V0A H8 H8 H 0 1 N N N 30.179 -34.830 89.650 1.466 2.475 -0.998 H8 V0A 36 V0A H9 H9 H 0 1 N N N 31.278 -35.575 90.860 3.211 2.609 -1.321 H9 V0A 37 V0A H10 H10 H 0 1 N N N 33.750 -36.485 92.678 6.519 1.325 -0.867 H10 V0A 38 V0A H11 H11 H 0 1 N N N 36.932 -34.492 90.066 5.672 -3.002 -0.208 H11 V0A 39 V0A H12 H12 H 0 1 N N N 36.567 -35.829 88.924 5.259 -2.532 1.458 H12 V0A 40 V0A H13 H13 H 0 1 N N N 36.301 -34.124 88.425 4.042 -3.328 0.431 H13 V0A 41 V0A H14 H14 H 0 1 N N N 30.327 -34.961 87.294 3.167 1.910 2.822 H14 V0A 42 V0A H15 H15 H 0 1 N N N 30.943 -34.567 85.653 1.557 1.436 3.414 H15 V0A 43 V0A H16 H16 H 0 1 N N N 31.381 -36.128 86.427 2.773 0.189 3.047 H16 V0A 44 V0A H17 H17 H 0 1 N N N 34.059 -33.558 86.036 0.852 -0.914 1.431 H17 V0A 45 V0A H18 H18 H 0 1 N N N 35.159 -37.856 91.682 7.359 -0.996 0.822 H18 V0A 46 V0A H19 H19 H 0 1 N N N 35.109 -37.772 89.888 6.930 0.667 1.289 H19 V0A 47 V0A H20 H20 H 0 1 N N N 36.489 -37.050 90.782 6.047 -0.710 1.991 H20 V0A 48 V0A H21 H21 H 0 1 N N N 33.048 -37.054 86.700 -0.489 2.399 -0.207 H21 V0A 49 V0A H22 H22 H 0 1 N N N 33.750 -37.515 85.112 -1.803 2.295 0.989 H22 V0A 50 V0A H23 H23 H 0 1 N N N 34.781 -37.512 86.583 -0.135 2.609 1.525 H23 V0A 51 V0A H24 H24 H 0 1 N N N 35.919 -34.324 84.908 -1.446 -1.406 0.818 H24 V0A 52 V0A H25 H25 H 0 1 N N N 35.580 -37.300 84.386 -3.022 1.183 0.320 H25 V0A 53 V0A H27 H27 H 0 1 N N N 39.357 -39.030 79.970 -8.489 -0.259 -0.874 H27 V0A 54 V0A H28 H28 H 0 1 N N N 37.648 -34.511 84.192 -4.491 -2.654 0.176 H28 V0A 55 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V0A C27 C26 SING N N 1 V0A C27 N06 DOUB N N 2 V0A O04 C26 DOUB N N 3 V0A C26 C25 SING N N 4 V0A N06 C28 SING N N 5 V0A C28 C25 SING N N 6 V0A C28 O05 DOUB N N 7 V0A C25 C24 DOUB N E 8 V0A C24 O03 SING N N 9 V0A C24 C23 SING N N 10 V0A C23 C22 DOUB N E 11 V0A C22 C20 SING N N 12 V0A C20 C21 SING N N 13 V0A C20 C18 DOUB N E 14 V0A C18 C12 SING N N 15 V0A C17 C12 SING N N 16 V0A C12 C09 SING N N 17 V0A C09 O02 SING N N 18 V0A C09 C07 SING N N 19 V0A O02 C10 SING N N 20 V0A C16 C10 SING N N 21 V0A C07 C14 SING N N 22 V0A C07 C08 SING N N 23 V0A C10 O01 SING N N 24 V0A C10 C13 SING N N 25 V0A O01 C08 SING N N 26 V0A C08 C11 SING N N 27 V0A C19 C13 SING N N 28 V0A C13 C15 DOUB N N 29 V0A C15 C11 SING N N 30 V0A C07 H1 SING N N 31 V0A C08 H2 SING N N 32 V0A C09 H3 SING N N 33 V0A C11 H4 SING N N 34 V0A C11 H5 SING N N 35 V0A C12 H6 SING N N 36 V0A C14 H7 SING N N 37 V0A C14 H8 SING N N 38 V0A C14 H9 SING N N 39 V0A C15 H10 SING N N 40 V0A C16 H11 SING N N 41 V0A C16 H12 SING N N 42 V0A C16 H13 SING N N 43 V0A C17 H14 SING N N 44 V0A C17 H15 SING N N 45 V0A C17 H16 SING N N 46 V0A C18 H17 SING N N 47 V0A C19 H18 SING N N 48 V0A C19 H19 SING N N 49 V0A C19 H20 SING N N 50 V0A C21 H21 SING N N 51 V0A C21 H22 SING N N 52 V0A C21 H23 SING N N 53 V0A C22 H24 SING N N 54 V0A C23 H25 SING N N 55 V0A C27 H27 SING N N 56 V0A O03 H28 SING N N 57 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V0A SMILES ACDLabs 12.01 "C2(C)C1CC=C(C(O1)(C)OC2C(C)[C@H]=C(C)[C@H]=[C@H]/C(O)=C3/C(C=NC3=O)=O)C" V0A InChI InChI 1.03 "InChI=1S/C22H27NO5/c1-12(6-8-16(24)19-17(25)11-23-21(19)26)10-13(2)20-15(4)18-9-7-14(3)22(5,27-18)28-20/h6-8,10-11,13,15,18,20,24H,9H2,1-5H3/b8-6+,12-10+,19-16+/t13-,15+,18-,20-,22-/m1/s1" V0A InChIKey InChI 1.03 MHIKRZGCDBIVFG-IVGQTCGHSA-N V0A SMILES_CANONICAL CACTVS 3.385 "C[C@H](/C=C(C)/C=C/C(O)=C1/C(=O)C=NC1=O)[C@H]2O[C@@]3(C)O[C@H](CC=C3C)[C@@H]2C" V0A SMILES CACTVS 3.385 "C[CH](C=C(C)C=CC(O)=C1C(=O)C=NC1=O)[CH]2O[C]3(C)O[CH](CC=C3C)[CH]2C" V0A SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1[C@H]2CC=C([C@](O2)(O[C@@H]1[C@H](C)/C=C(\C)/C=C/C(=C\3/C(=O)C=NC3=O)/O)C)C" V0A SMILES "OpenEye OEToolkits" 2.0.7 "CC1C2CC=C(C(O2)(OC1C(C)C=C(C)C=CC(=C3C(=O)C=NC3=O)O)C)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier V0A "SYSTEMATIC NAME" ACDLabs 12.01 "(3E)-3-{(2E,4E,6R)-1-hydroxy-4-methyl-6-[(1R,3R,4S,5R)-1,4,8-trimethyl-2,9-dioxabicyclo[3.3.1]non-7-en-3-yl]hepta-2,4-dien-1-ylidene}-2H-pyrrole-2,4(3H)-dione" V0A "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{E})-3-[(2~{E},4~{E},6~{R})-4-methyl-1-oxidanyl-6-[(1~{R},3~{R},4~{S},5~{R})-1,4,8-trimethyl-2,9-dioxabicyclo[3.3.1]non-7-en-3-yl]hepta-2,4-dienylidene]pyrrole-2,4-dione" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id V0A _pdbx_chem_comp_synonyms.name "Tirandamycin C" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V0A "Create component" 2020-06-09 RCSB V0A "Modify synonyms" 2021-03-01 PDBE V0A "Initial release" 2021-06-09 RCSB ##