data_V0B # _chem_comp.id V0B _chem_comp.name "N-[(6-methylimidazo[1,2-a]pyridin-2-yl)methyl]-4-oxidanylidene-pyrido[1,2-a]pyrimidine-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H15 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "~{N}-[(6-methylimidazo[1,2-a]pyridin-2-yl)methyl]-4-oxidanylidene-pyrido[1,2-a]pyrimidine-2-carboxamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-31 _chem_comp.pdbx_modified_date 2021-04-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 333.344 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V0B _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7O2X _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V0B C10 C1 C 0 1 N N N -41.552 36.898 27.012 1.165 -1.899 -0.038 C10 V0B 1 V0B C13 C2 C 0 1 N N N -40.047 38.988 27.081 3.639 -1.613 -0.095 C13 V0B 2 V0B C17 C3 C 0 1 N N N -39.559 41.818 24.359 5.667 1.386 -0.029 C17 V0B 3 V0B C20 C4 C 0 1 N N N -41.573 40.014 22.951 3.140 2.477 0.068 C20 V0B 4 V0B C21 C5 C 0 1 N N N -41.023 39.692 24.364 3.318 1.081 0.012 C21 V0B 5 V0B C01 C6 C 0 1 N N N -42.978 29.140 21.758 -7.290 1.934 -1.087 C01 V0B 6 V0B C02 C7 C 0 1 Y N N -43.380 30.425 22.481 -6.165 1.208 -0.395 C02 V0B 7 V0B C03 C8 C 0 1 Y N N -44.494 31.231 21.970 -6.060 1.253 1.005 C03 V0B 8 V0B C04 C9 C 0 1 Y N N -44.885 32.476 22.664 -5.044 0.596 1.626 C04 V0B 9 V0B C05 C10 C 0 1 Y N N -44.088 32.912 23.958 -4.111 -0.122 0.851 C05 V0B 10 V0B C07 C11 C 0 1 Y N N -43.301 33.895 25.746 -2.486 -1.323 0.065 C07 V0B 11 V0B C08 C12 C 0 1 N N N -43.105 34.886 26.874 -1.254 -2.189 0.005 C08 V0B 12 V0B C12 C13 C 0 1 N N N -41.014 38.125 26.353 2.375 -1.038 -0.039 C12 V0B 13 V0B C14 C14 C 0 1 N N N -39.546 40.222 26.417 4.763 -0.774 -0.089 C14 V0B 14 V0B C18 C15 C 0 1 N N N -40.090 42.163 22.963 5.515 2.729 0.024 C18 V0B 15 V0B C19 C16 C 0 1 N N N -41.086 41.258 22.282 4.232 3.292 0.075 C19 V0B 16 V0B C23 C17 C 0 1 Y N N -42.548 32.741 25.530 -3.210 -0.908 -0.998 C23 V0B 17 V0B C25 C18 C 0 1 Y N N -42.629 30.847 23.714 -5.267 0.512 -1.123 C25 V0B 18 V0B N06 N1 N 0 1 Y N N -44.230 33.995 24.783 -3.045 -0.839 1.177 N06 V0B 19 V0B N09 N2 N 0 1 N N N -42.509 36.068 26.292 -0.060 -1.340 0.010 N09 V0B 20 V0B N16 N3 N 0 1 N N N -40.040 40.566 25.063 4.583 0.563 -0.035 N16 V0B 21 V0B N22 N4 N 0 1 N N N -41.511 38.463 25.046 2.252 0.286 0.013 N22 V0B 22 V0B N24 N5 N 0 1 Y N N -43.038 32.138 24.437 -4.240 -0.148 -0.513 N24 V0B 23 V0B O11 O1 O 0 1 N N N -41.212 36.701 28.114 1.279 -3.108 -0.086 O11 V0B 24 V0B O15 O2 O 0 1 N N N -38.749 40.902 26.990 5.888 -1.246 -0.131 O15 V0B 25 V0B H1 H1 H 0 1 N N N -39.714 38.724 28.074 3.754 -2.686 -0.138 H1 V0B 26 V0B H3 H3 H 0 1 N N N -38.842 42.467 24.840 6.659 0.962 -0.067 H3 V0B 27 V0B H4 H4 H 0 1 N N N -42.284 39.361 22.467 2.146 2.897 0.112 H4 V0B 28 V0B H5 H5 H 0 1 N N N -42.220 29.370 20.995 -8.150 1.271 -1.178 H5 V0B 29 V0B H6 H6 H 0 1 N N N -42.563 28.425 22.484 -7.568 2.812 -0.504 H6 V0B 30 V0B H7 H7 H 0 1 N N N -43.862 28.699 21.275 -6.965 2.246 -2.079 H7 V0B 31 V0B H8 H8 H 0 1 N N N -45.029 30.915 21.087 -6.783 1.808 1.586 H8 V0B 32 V0B H9 H9 H 0 1 N N N -45.702 33.078 22.293 -4.953 0.624 2.702 H9 V0B 33 V0B H10 H10 H 0 1 N N N -44.074 35.136 27.331 -1.233 -2.851 0.870 H10 V0B 34 V0B H11 H11 H 0 1 N N N -42.437 34.462 27.639 -1.272 -2.784 -0.908 H11 V0B 35 V0B H12 H12 H 0 1 N N N -39.749 43.059 22.465 6.384 3.370 0.029 H12 V0B 36 V0B H13 H13 H 0 1 N N N -41.452 41.512 21.298 4.110 4.364 0.117 H13 V0B 37 V0B H14 H14 H 0 1 N N N -41.721 32.396 26.133 -3.013 -1.134 -2.035 H14 V0B 38 V0B H15 H15 H 0 1 N N N -41.811 30.248 24.087 -5.360 0.479 -2.199 H15 V0B 39 V0B H16 H16 H 0 1 N N N -42.763 36.326 25.360 -0.152 -0.375 0.048 H16 V0B 40 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V0B C01 C02 SING N N 1 V0B C03 C02 SING Y N 2 V0B C03 C04 DOUB Y N 3 V0B C19 C20 DOUB N N 4 V0B C19 C18 SING N N 5 V0B C02 C25 DOUB Y N 6 V0B C04 C05 SING Y N 7 V0B C20 C21 SING N N 8 V0B C18 C17 DOUB N N 9 V0B C25 N24 SING Y N 10 V0B C05 N24 SING Y N 11 V0B C05 N06 DOUB Y N 12 V0B C17 N16 SING N N 13 V0B C21 N22 DOUB N N 14 V0B C21 N16 SING N N 15 V0B N24 C23 SING Y N 16 V0B N06 C07 SING Y N 17 V0B N22 C12 SING N N 18 V0B N16 C14 SING N N 19 V0B C23 C07 DOUB Y N 20 V0B C07 C08 SING N N 21 V0B N09 C08 SING N N 22 V0B N09 C10 SING N N 23 V0B C12 C10 SING N N 24 V0B C12 C13 DOUB N N 25 V0B C14 O15 DOUB N N 26 V0B C14 C13 SING N N 27 V0B C10 O11 DOUB N N 28 V0B C13 H1 SING N N 29 V0B C17 H3 SING N N 30 V0B C20 H4 SING N N 31 V0B C01 H5 SING N N 32 V0B C01 H6 SING N N 33 V0B C01 H7 SING N N 34 V0B C03 H8 SING N N 35 V0B C04 H9 SING N N 36 V0B C08 H10 SING N N 37 V0B C08 H11 SING N N 38 V0B C18 H12 SING N N 39 V0B C19 H13 SING N N 40 V0B C23 H14 SING N N 41 V0B C25 H15 SING N N 42 V0B N09 H16 SING N N 43 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V0B InChI InChI 1.03 "InChI=1S/C18H15N5O2/c1-12-5-6-15-20-13(11-22(15)10-12)9-19-18(25)14-8-17(24)23-7-3-2-4-16(23)21-14/h2-8,10-11H,9H2,1H3,(H,19,25)" V0B InChIKey InChI 1.03 HGTYDECGVDYGCR-UHFFFAOYSA-N V0B SMILES_CANONICAL CACTVS 3.385 "Cc1ccc2nc(CNC(=O)C3=CC(=O)N4C=CC=CC4=N3)cn2c1" V0B SMILES CACTVS 3.385 "Cc1ccc2nc(CNC(=O)C3=CC(=O)N4C=CC=CC4=N3)cn2c1" V0B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc2nc(cn2c1)CNC(=O)C3=CC(=O)N4C=CC=CC4=N3" V0B SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccc2nc(cn2c1)CNC(=O)C3=CC(=O)N4C=CC=CC4=N3" # _pdbx_chem_comp_identifier.comp_id V0B _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(6-methylimidazo[1,2-a]pyridin-2-yl)methyl]-4-oxidanylidene-pyrido[1,2-a]pyrimidine-2-carboxamide" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id V0B _pdbx_chem_comp_synonyms.name "~{N}-[(6-methylimidazo[1,2-a]pyridin-2-yl)methyl]-4-oxidanylidene-pyrido[1,2-a]pyrimidine-2-carboxamide" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V0B "Create component" 2021-03-31 PDBE V0B "Initial release" 2021-04-07 RCSB ##