data_V0G # _chem_comp.id V0G _chem_comp.name "N-(3-{[5-chloro-4-(1H-indol-3-yl)pyrimidin-2-yl]amino}phenyl)-4-{[4-(dimethylamino)butanoyl]amino}benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H30 Cl N7 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-06-10 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 568.069 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V0G _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6XD3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V0G C13 C1 C 0 1 Y N N N N N 119.415 96.922 78.951 3.501 1.784 0.614 C13 V0G 1 V0G C15 C2 C 0 1 Y N N N N N 120.455 96.860 76.784 5.762 1.759 -0.185 C15 V0G 2 V0G C17 C3 C 0 1 N N N N N N 122.005 98.524 75.716 7.179 -0.141 -0.033 C17 V0G 3 V0G C20 C4 C 0 1 N N N N N N 124.969 97.265 75.804 9.835 -2.869 0.368 C20 V0G 4 V0G C22 C5 C 0 1 N N N N N N 127.355 97.175 75.908 9.182 -4.938 -0.708 C22 V0G 5 V0G C26 C6 C 0 1 Y N N N N N 118.204 96.040 77.070 4.241 3.423 -1.003 C26 V0G 6 V0G C28 C7 C 0 1 Y N N N N N 115.314 94.820 81.566 -0.589 4.848 0.289 C28 V0G 7 V0G C02 C8 C 0 1 Y N N N N N 108.218 92.213 81.756 -3.643 -1.519 -0.706 C02 V0G 8 V0G C03 C9 C 0 1 Y N N N N N 108.236 92.449 80.391 -2.619 -0.618 -0.935 C03 V0G 9 V0G C05 C10 C 0 1 Y N N N N N 110.363 93.296 80.573 -3.793 0.997 0.220 C05 V0G 10 V0G C07 C11 C 0 1 Y N N N N N 112.811 94.205 80.505 -2.763 3.150 0.559 C07 V0G 11 V0G C08 C12 C 0 1 Y N N N N N 113.914 94.366 79.672 -1.475 2.641 0.645 C08 V0G 12 V0G C09 C13 C 0 1 Y N N N N N 115.162 94.668 80.197 -0.386 3.490 0.504 C09 V0G 13 V0G C11 C14 C 0 1 N N N N N N 117.061 96.088 79.343 1.886 3.495 -0.200 C11 V0G 14 V0G C12 C15 C 0 1 Y N N N N N 118.268 96.347 78.420 3.232 2.890 -0.196 C12 V0G 15 V0G C14 C16 C 0 1 Y N N N N N 120.511 97.175 78.133 4.759 1.226 0.619 C14 V0G 16 V0G C18 C17 C 0 1 N N N N N N 123.199 98.873 74.810 8.555 -0.741 0.090 C18 V0G 17 V0G C19 C18 C 0 1 N N N N N N 124.572 98.708 75.472 8.438 -2.259 0.243 C19 V0G 18 V0G C23 C19 C 0 1 N N N N N N 126.291 97.412 73.790 11.017 -4.921 0.872 C23 V0G 19 V0G C25 C20 C 0 1 Y N N N N N 119.302 96.295 76.250 5.496 2.857 -0.997 C25 V0G 20 V0G C29 C21 C 0 1 Y N N N N N 114.217 94.668 82.404 -1.873 5.353 0.215 C29 V0G 21 V0G C30 C22 C 0 1 Y N N N N N 112.972 94.365 81.871 -2.959 4.509 0.349 C30 V0G 22 V0G C32 C23 C 0 1 Y N N N N N 109.329 92.556 82.508 -4.763 -1.087 0.015 C32 V0G 23 V0G C33 C24 C 0 1 Y N N N N N 109.420 92.339 84.022 -5.888 -2.009 0.281 C33 V0G 24 V0G C34 C25 C 0 1 Y N N N N N 108.381 92.295 84.938 -5.800 -3.281 0.748 C34 V0G 25 V0G C36 C26 C 0 1 Y N N N N N 110.258 92.015 86.047 -7.998 -2.897 0.478 C36 V0G 26 V0G C37 C27 C 0 1 Y N N N N N 111.250 91.815 87.040 -9.387 -2.934 0.408 C37 V0G 27 V0G C38 C28 C 0 1 Y N N N N N 112.590 91.772 86.680 -10.084 -1.830 -0.031 C38 V0G 28 V0G C39 C29 C 0 1 Y N N N N N 112.964 91.925 85.345 -9.414 -0.675 -0.407 C39 V0G 29 V0G C40 C30 C 0 1 Y N N N N N 111.989 92.122 84.374 -8.039 -0.615 -0.341 C40 V0G 30 V0G C41 C31 C 0 1 Y N N N N N 110.622 92.167 84.740 -7.321 -1.726 0.097 C41 V0G 31 V0G N04 N1 N 0 1 Y N N N N N 109.313 92.985 79.849 -2.724 0.615 -0.464 N04 V0G 32 V0G N06 N2 N 0 1 N N N N N N 111.517 93.887 79.893 -3.863 2.297 0.694 N06 V0G 33 V0G N10 N3 N 0 1 N N N N N N 116.308 94.834 79.296 0.914 2.980 0.579 N10 V0G 34 V0G N16 N4 N 0 1 N N N N N N 121.606 97.134 75.921 7.035 1.192 -0.178 N16 V0G 35 V0G N21 N5 N 0 1 N N N N N N 126.184 96.838 75.121 9.722 -4.326 0.514 N21 V0G 36 V0G N31 N6 N 0 1 Y N N N N N 110.359 93.083 81.873 -4.799 0.170 0.457 N31 V0G 37 V0G N35 N7 N 0 1 Y N N N N N 108.899 92.095 86.147 -7.047 -3.816 0.866 N35 V0G 38 V0G O24 O1 O 0 1 N N N N N N 121.395 99.391 76.238 6.200 -0.856 -0.002 O24 V0G 39 V0G O27 O2 O 0 1 N N N N N N 116.739 96.942 80.096 1.653 4.457 -0.906 O27 V0G 40 V0G CL01 CL1 CL 0 0 N N N N N N 106.763 91.494 82.496 -3.546 -3.146 -1.305 CL01 V0G 41 V0G H1 H1 H 0 1 N N N N N N 119.456 97.173 80.001 2.723 1.370 1.239 H1 V0G 42 V0G H2 H2 H 0 1 N N N N N N 124.147 96.598 75.507 10.414 -2.637 -0.526 H2 V0G 43 V0G H3 H3 H 0 1 N N N N N N 125.131 97.187 76.889 10.336 -2.454 1.242 H3 V0G 44 V0G H4 H4 H 0 1 N N N N N N 127.262 96.735 76.912 9.043 -6.007 -0.548 H4 V0G 45 V0G H5 H5 H 0 1 N N N N N N 128.255 96.777 75.416 8.224 -4.479 -0.951 H5 V0G 46 V0G H6 H6 H 0 1 N N N N N N 127.437 98.269 75.993 9.879 -4.781 -1.531 H6 V0G 47 V0G H7 H7 H 0 1 N N N N N N 117.307 95.605 76.655 4.037 4.278 -1.631 H7 V0G 48 V0G H8 H8 H 0 1 N N N N N N 116.283 95.056 81.980 0.258 5.510 0.184 H8 V0G 49 V0G H9 H9 H 0 1 N N N N N N 107.382 92.198 79.780 -1.743 -0.918 -1.490 H9 V0G 50 V0G H10 H10 H 0 1 N N N N N N 113.797 94.255 78.604 -1.320 1.586 0.812 H10 V0G 51 V0G H11 H11 H 0 1 N N N N N N 121.405 97.616 78.548 4.969 0.373 1.248 H11 V0G 52 V0G H12 H12 H 0 1 N N N N N N 123.095 99.921 74.493 9.134 -0.510 -0.804 H12 V0G 53 V0G H13 H13 H 0 1 N N N N N N 123.163 98.218 73.927 9.056 -0.326 0.965 H13 V0G 54 V0G H14 H14 H 0 1 N N N N N N 125.330 99.121 74.790 7.937 -2.674 -0.632 H14 V0G 55 V0G H15 H15 H 0 1 N N N N N N 124.569 99.284 76.409 7.859 -2.491 1.137 H15 V0G 56 V0G H16 H16 H 0 1 N N N N N N 127.219 97.064 73.314 11.361 -4.501 1.817 H16 V0G 57 V0G H17 H17 H 0 1 N N N N N N 125.428 97.097 73.185 10.905 -6.001 0.974 H17 V0G 58 V0G H18 H18 H 0 1 N N N N N N 126.306 98.509 73.864 11.745 -4.704 0.091 H18 V0G 59 V0G H19 H19 H 0 1 N N N N N N 119.257 96.053 75.198 6.276 3.269 -1.620 H19 V0G 60 V0G H20 H20 H 0 1 N N N N N N 114.333 94.786 83.471 -2.027 6.409 0.052 H20 V0G 61 V0G H21 H21 H 0 1 N N N N N N 112.122 94.253 82.527 -3.961 4.906 0.282 H21 V0G 62 V0G H22 H22 H 0 1 N N N N N N 107.331 92.404 84.710 -4.880 -3.793 0.989 H22 V0G 63 V0G H23 H23 H 0 1 N N N N N N 110.964 91.696 88.075 -9.919 -3.829 0.698 H23 V0G 64 V0G H24 H24 H 0 1 N N N N N N 113.346 91.620 87.436 -11.162 -1.864 -0.084 H24 V0G 65 V0G H25 H25 H 0 1 N N N N N N 114.007 91.891 85.067 -9.973 0.183 -0.750 H25 V0G 66 V0G H26 H26 H 0 1 N N N N N N 112.275 92.241 83.339 -7.520 0.285 -0.635 H26 V0G 67 V0G H27 H27 H 0 1 N N N N N N 111.413 94.093 78.920 -4.674 2.616 1.120 H27 V0G 68 V0G H28 H28 H 0 1 N N N N N N 116.569 94.105 78.663 1.116 2.255 1.191 H28 V0G 69 V0G H29 H29 H 0 1 N N N N N N 122.107 96.388 75.483 7.818 1.756 -0.276 H29 V0G 70 V0G H31 H31 H 0 1 N N N N N N 108.375 92.016 86.995 -7.238 -4.713 1.180 H31 V0G 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V0G C23 N21 SING N N 1 V0G C18 C19 SING N N 2 V0G C18 C17 SING N N 3 V0G N21 C20 SING N N 4 V0G N21 C22 SING N N 5 V0G C19 C20 SING N N 6 V0G C17 N16 SING N N 7 V0G C17 O24 DOUB N N 8 V0G N16 C15 SING N N 9 V0G C25 C15 DOUB Y N 10 V0G C25 C26 SING Y N 11 V0G C15 C14 SING Y N 12 V0G C26 C12 DOUB Y N 13 V0G C14 C13 DOUB Y N 14 V0G C12 C13 SING Y N 15 V0G C12 C11 SING N N 16 V0G N10 C11 SING N N 17 V0G N10 C09 SING N N 18 V0G C11 O27 DOUB N N 19 V0G C08 C09 DOUB Y N 20 V0G C08 C07 SING Y N 21 V0G N04 C03 DOUB Y N 22 V0G N04 C05 SING Y N 23 V0G N06 C07 SING N N 24 V0G N06 C05 SING N N 25 V0G C09 C28 SING Y N 26 V0G C03 C02 SING Y N 27 V0G C07 C30 DOUB Y N 28 V0G C05 N31 DOUB Y N 29 V0G C28 C29 DOUB Y N 30 V0G C02 CL01 SING N N 31 V0G C02 C32 DOUB Y N 32 V0G C30 C29 SING Y N 33 V0G N31 C32 SING Y N 34 V0G C32 C33 SING N N 35 V0G C33 C41 SING Y N 36 V0G C33 C34 DOUB Y N 37 V0G C40 C41 DOUB Y N 38 V0G C40 C39 SING Y N 39 V0G C41 C36 SING Y N 40 V0G C34 N35 SING Y N 41 V0G C39 C38 DOUB Y N 42 V0G C36 N35 SING Y N 43 V0G C36 C37 DOUB Y N 44 V0G C38 C37 SING Y N 45 V0G C13 H1 SING N N 46 V0G C20 H2 SING N N 47 V0G C20 H3 SING N N 48 V0G C22 H4 SING N N 49 V0G C22 H5 SING N N 50 V0G C22 H6 SING N N 51 V0G C26 H7 SING N N 52 V0G C28 H8 SING N N 53 V0G C03 H9 SING N N 54 V0G C08 H10 SING N N 55 V0G C14 H11 SING N N 56 V0G C18 H12 SING N N 57 V0G C18 H13 SING N N 58 V0G C19 H14 SING N N 59 V0G C19 H15 SING N N 60 V0G C23 H16 SING N N 61 V0G C23 H17 SING N N 62 V0G C23 H18 SING N N 63 V0G C25 H19 SING N N 64 V0G C29 H20 SING N N 65 V0G C30 H21 SING N N 66 V0G C34 H22 SING N N 67 V0G C37 H23 SING N N 68 V0G C38 H24 SING N N 69 V0G C39 H25 SING N N 70 V0G C40 H26 SING N N 71 V0G N06 H27 SING N N 72 V0G N10 H28 SING N N 73 V0G N16 H29 SING N N 74 V0G N35 H31 SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V0G SMILES ACDLabs 12.01 "c1c(ccc(c1)NC(=O)CCCN(C)C)C(=O)Nc2cccc(c2)Nc3nc(c(Cl)cn3)c4c5c(nc4)cccc5" V0G InChI InChI 1.03 "InChI=1S/C31H30ClN7O2/c1-39(2)16-6-11-28(40)35-21-14-12-20(13-15-21)30(41)36-22-7-5-8-23(17-22)37-31-34-19-26(32)29(38-31)25-18-33-27-10-4-3-9-24(25)27/h3-5,7-10,12-15,17-19,33H,6,11,16H2,1-2H3,(H,35,40)(H,36,41)(H,34,37,38)" V0G InChIKey InChI 1.03 TUERFPPIPKZNKE-UHFFFAOYSA-N V0G SMILES_CANONICAL CACTVS 3.385 "CN(C)CCCC(=O)Nc1ccc(cc1)C(=O)Nc2cccc(Nc3ncc(Cl)c(n3)c4c[nH]c5ccccc45)c2" V0G SMILES CACTVS 3.385 "CN(C)CCCC(=O)Nc1ccc(cc1)C(=O)Nc2cccc(Nc3ncc(Cl)c(n3)c4c[nH]c5ccccc45)c2" V0G SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)CCCC(=O)Nc1ccc(cc1)C(=O)Nc2cccc(c2)Nc3ncc(c(n3)c4c[nH]c5c4cccc5)Cl" V0G SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)CCCC(=O)Nc1ccc(cc1)C(=O)Nc2cccc(c2)Nc3ncc(c(n3)c4c[nH]c5c4cccc5)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier V0G "SYSTEMATIC NAME" ACDLabs 12.01 "N-(3-{[5-chloro-4-(1H-indol-3-yl)pyrimidin-2-yl]amino}phenyl)-4-{[4-(dimethylamino)butanoyl]amino}benzamide" V0G "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[3-[[5-chloranyl-4-(1~{H}-indol-3-yl)pyrimidin-2-yl]amino]phenyl]-4-[4-(dimethylamino)butanoylamino]benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V0G "Create component" 2020-06-10 RCSB V0G "Initial release" 2020-09-09 RCSB V0G "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id V0G _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C19 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #