data_V0I # _chem_comp.id V0I _chem_comp.name "8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-methyl-amino]prop-1-ynyl]-6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-[(dimethylsulfamoylamino)methyl]-3,4-bis(oxidanyl)oxolan-2-yl]purine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H35 N13 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-07 _chem_comp.pdbx_modified_date 2025-03-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 689.703 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V0I _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QGM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V0I N N1 N 0 1 N N N N N N 14.052 -9.468 -12.031 -1.978 -1.858 -2.436 N V0I 1 V0I C C1 C 0 1 N N N N N N 12.739 -8.962 -12.523 -1.000 -1.299 -3.378 C V0I 2 V0I O O1 O 0 1 N N N N N N 15.836 -8.339 -9.922 -4.196 -0.823 -0.926 O V0I 3 V0I C1 C2 C 0 1 N N N N N N 14.041 -9.800 -10.605 -3.339 -1.788 -2.985 C1 V0I 4 V0I C10 C3 C 0 1 Y N N N N N 18.665 -4.009 -7.482 -6.818 3.469 2.132 C10 V0I 5 V0I C11 C4 C 0 1 N N N N N N 14.524 -10.569 -12.887 -1.628 -3.237 -2.071 C11 V0I 6 V0I C12 C5 C 0 1 N N N N N N 15.971 -10.835 -12.843 -0.405 -3.233 -1.252 C12 V0I 7 V0I C13 C6 C 0 1 N N N N N N 17.160 -10.961 -12.892 0.570 -3.230 -0.598 C13 V0I 8 V0I C14 C7 C 0 1 Y N N N N N 18.536 -11.272 -12.831 1.760 -3.225 0.199 C14 V0I 9 V0I C15 C8 C 0 1 Y N N N N N 20.388 -12.198 -12.333 3.440 -3.922 1.390 C15 V0I 10 V0I C16 C9 C 0 1 Y N N N N N 20.726 -11.066 -13.050 3.534 -2.521 1.316 C16 V0I 11 V0I C17 C10 C 0 1 N N R N N N 19.443 -9.217 -14.091 2.142 -0.721 0.204 C17 V0I 12 V0I C18 C11 C 0 1 N N R N N N 18.326 -7.203 -13.976 3.021 1.383 -0.065 C18 V0I 13 V0I C19 C12 C 0 1 N N S N N N 18.368 -7.673 -15.432 2.240 1.469 1.266 C19 V0I 14 V0I C2 C13 C 0 1 N N R N N N 15.402 -9.711 -9.943 -4.355 -1.915 -1.848 C2 V0I 15 V0I C20 C14 C 0 1 N N R N N N 18.509 -9.180 -15.286 1.649 0.053 1.446 C20 V0I 16 V0I C21 C15 C 0 1 N N N N N N 16.969 -7.231 -13.308 4.307 2.207 0.018 C21 V0I 17 V0I C22 C16 C 0 1 N N N N N N 13.622 -5.020 -13.266 8.522 2.158 -0.925 C22 V0I 18 V0I C23 C17 C 0 1 N N N N N N 14.013 -5.200 -10.826 7.374 3.637 0.788 C23 V0I 19 V0I C24 C18 C 0 1 Y N N N N N 22.882 -11.468 -12.841 5.439 -2.598 2.601 C24 V0I 20 V0I C25 C19 C 0 1 Y N N N N N 21.442 -12.979 -11.842 4.425 -4.615 2.119 C25 V0I 21 V0I C3 C20 C 0 1 N N R N N N 16.885 -8.274 -8.961 -5.510 -0.500 -0.425 C3 V0I 22 V0I C4 C21 C 0 1 N N R N N N 16.652 -9.384 -7.930 -6.416 -0.625 -1.676 C4 V0I 23 V0I C5 C22 C 0 1 N N S N N N 15.398 -10.093 -8.463 -5.786 -1.832 -2.412 C5 V0I 24 V0I C6 C23 C 0 1 Y N N N N N 15.972 -6.262 -7.706 -4.700 1.884 -0.248 C6 V0I 25 V0I C7 C24 C 0 1 Y N N N N N 17.680 -5.000 -7.660 -6.069 2.709 1.218 C7 V0I 26 V0I C8 C25 C 0 1 Y N N N N N 18.051 -6.125 -8.377 -6.421 1.362 1.029 C8 V0I 27 V0I C9 C26 C 0 1 Y N N N N N 20.092 -5.365 -8.697 -8.115 1.608 2.562 C9 V0I 28 V0I N1 N2 N 0 1 Y N N N N N 16.947 -6.940 -8.396 -5.541 0.868 0.099 N1 V0I 29 V0I N10 N3 N 0 1 Y N N N N N 21.963 -10.642 -13.348 4.540 -1.908 1.931 N10 V0I 30 V0I N11 N4 N 0 1 Y N N N N N 22.699 -12.582 -12.126 5.393 -3.914 2.700 N11 V0I 31 V0I N12 N5 N 0 1 N N N N N N 21.260 -14.064 -11.087 4.386 -5.994 2.227 N12 V0I 32 V0I N2 N6 N 0 1 Y N N N N N 16.359 -5.099 -7.237 -5.012 2.963 0.409 N2 V0I 33 V0I N3 N7 N 0 1 Y N N N N N 19.254 -6.376 -8.919 -7.441 0.859 1.715 N3 V0I 34 V0I N4 N8 N 0 1 Y N N N N N 19.878 -4.231 -8.023 -7.822 2.878 2.773 N4 V0I 35 V0I N5 N9 N 0 1 N N N N N N 18.457 -2.849 -6.847 -6.515 4.799 2.365 N5 V0I 36 V0I N6 N10 N 0 1 Y N N N N N 19.008 -12.325 -12.218 2.345 -4.292 0.691 N6 V0I 37 V0I N7 N11 N 0 1 Y N N N N N 19.535 -10.464 -13.370 2.467 -2.105 0.560 N7 V0I 38 V0I N8 N12 N 0 1 N N N N N N 16.281 -5.969 -13.579 4.978 2.197 -1.284 N8 V0I 39 V0I N9 N13 N 0 1 N N N N N N 14.589 -5.006 -12.162 7.403 3.021 -0.541 N9 V0I 40 V0I O1 O2 O 0 1 N N N N N N 15.504 -11.493 -8.276 -6.509 -3.030 -2.119 O1 V0I 41 V0I O2 O3 O 0 1 N N N N N N 17.819 -10.210 -7.919 -7.767 -0.904 -1.302 O2 V0I 42 V0I O3 O4 O 0 1 N N N N N N 19.003 -8.209 -13.210 3.331 -0.019 -0.221 O3 V0I 43 V0I O4 O5 O 0 1 N N N N N N 19.117 -9.764 -16.442 0.221 0.106 1.469 O4 V0I 44 V0I O5 O6 O 0 1 N N N N N N 19.541 -7.191 -16.070 1.198 2.441 1.173 O5 V0I 45 V0I O6 O7 O 0 1 N N N N N N 16.487 -3.635 -13.155 6.674 2.977 -2.899 O6 V0I 46 V0I O7 O8 O 0 1 N N N N N N 16.862 -5.148 -11.233 5.635 4.576 -1.282 O7 V0I 47 V0I S S1 S 0 1 N N N N N N 16.173 -4.832 -12.442 6.169 3.300 -1.610 S V0I 48 V0I H9 H2 H 0 1 N N N N N N 12.813 -8.732 -13.596 -1.038 -1.856 -4.314 H9 V0I 49 V0I H10 H3 H 0 1 N N N N N N 11.968 -9.730 -12.365 -1.238 -0.252 -3.569 H10 V0I 50 V0I H8 H4 H 0 1 N N N N N N 12.467 -8.051 -11.970 -0.000 -1.373 -2.951 H8 V0I 51 V0I H12 H5 H 0 1 N N N N N N 13.360 -9.104 -10.093 -3.477 -0.833 -3.491 H12 V0I 52 V0I H11 H6 H 0 1 N N N N N N 13.667 -10.828 -10.492 -3.486 -2.601 -3.696 H11 V0I 53 V0I H20 H7 H 0 1 N N N N N N 14.002 -11.486 -12.577 -2.445 -3.681 -1.502 H20 V0I 54 V0I H19 H8 H 0 1 N N N N N N 14.256 -10.328 -13.926 -1.457 -3.820 -2.976 H19 V0I 55 V0I H4 H9 H 0 1 N N N N N N 20.448 -8.954 -14.453 1.387 -0.698 -0.582 H4 V0I 56 V0I H5 H10 H 0 1 N N N N N N 18.796 -6.214 -13.872 2.401 1.730 -0.891 H5 V0I 57 V0I H6 H11 H 0 1 N N N N N N 17.445 -7.404 -15.966 2.913 1.709 2.089 H6 V0I 58 V0I H H12 H 0 1 N N N N N N 16.122 -10.342 -10.485 -4.213 -2.862 -1.328 H V0I 59 V0I H7 H13 H 0 1 N N N N N N 17.541 -9.644 -15.044 2.030 -0.407 2.358 H7 V0I 60 V0I H23 H14 H 0 1 N N N N N N 16.377 -8.067 -13.709 4.064 3.233 0.294 H23 V0I 61 V0I H24 H15 H 0 1 N N N N N N 17.094 -7.357 -12.223 4.967 1.775 0.771 H24 V0I 62 V0I H28 H16 H 0 1 N N N N N N 12.606 -5.148 -12.863 9.231 2.093 -0.098 H28 V0I 63 V0I H26 H17 H 0 1 N N N N N N 13.681 -4.070 -13.817 8.149 1.162 -1.162 H26 V0I 64 V0I H27 H18 H 0 1 N N N N N N 13.854 -5.853 -13.946 9.021 2.576 -1.799 H27 V0I 65 V0I H31 H19 H 0 1 N N N N N N 12.920 -5.291 -10.907 7.792 4.642 0.731 H31 V0I 66 V0I H30 H20 H 0 1 N N N N N N 14.425 -6.117 -10.379 6.344 3.691 1.141 H30 V0I 67 V0I H29 H21 H 0 1 N N N N N N 14.263 -4.338 -10.190 7.965 3.036 1.479 H29 V0I 68 V0I H32 H22 H 0 1 N N N N N N 23.910 -11.200 -13.035 6.243 -2.068 3.088 H32 V0I 69 V0I H1 H23 H 0 1 N N N N N N 17.841 -8.485 -9.463 -5.814 -1.212 0.342 H1 V0I 70 V0I H2 H24 H 0 1 N N N N N N 16.451 -8.948 -6.940 -6.361 0.275 -2.288 H2 V0I 71 V0I H3 H25 H 0 1 N N N N N N 14.502 -9.686 -7.973 -5.762 -1.654 -3.487 H3 V0I 72 V0I H15 H26 H 0 1 N N N N N N 14.975 -6.652 -7.562 -3.895 1.804 -0.963 H15 V0I 73 V0I H16 H27 H 0 1 N N N N N N 21.080 -5.477 -9.119 -8.939 1.168 3.104 H16 V0I 74 V0I H34 H28 H 0 1 N N N N N N 22.148 -14.444 -10.829 3.674 -6.494 1.799 H34 V0I 75 V0I H33 H29 H 0 1 N N N N N N 20.752 -13.815 -10.263 5.071 -6.460 2.732 H33 V0I 76 V0I H18 H30 H 0 1 N N N N N N 19.290 -2.297 -6.878 -7.037 5.311 3.001 H18 V0I 77 V0I H17 H31 H 0 1 N N N N N N 17.712 -2.353 -7.294 -5.780 5.218 1.891 H17 V0I 78 V0I H25 H32 H 0 1 N N N N N N 16.748 -5.551 -14.358 4.725 1.544 -1.955 H25 V0I 79 V0I H13 H33 H 0 1 N N N N N N 14.722 -11.918 -8.610 -7.434 -3.010 -2.401 H13 V0I 80 V0I H14 H34 H 0 1 N N N N N N 17.706 -10.911 -7.287 -8.372 -0.991 -2.051 H14 V0I 81 V0I H21 H35 H 0 1 N N N N N N 19.191 -10.703 -16.321 -0.143 0.580 2.229 H21 V0I 82 V0I H22 H36 H 0 1 N N N N N N 19.556 -7.489 -16.972 0.675 2.537 1.981 H22 V0I 83 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V0I C N SING N N 1 V0I C1 N SING N N 2 V0I C2 C1 SING N N 3 V0I C2 O SING N N 4 V0I O C3 SING N N 5 V0I C3 C4 SING N N 6 V0I C4 C5 SING N N 7 V0I C5 C2 SING N N 8 V0I O1 C5 SING N N 9 V0I O2 C4 SING N N 10 V0I N1 C3 SING N N 11 V0I N1 C6 SING Y N 12 V0I C6 N2 DOUB Y N 13 V0I N2 C7 SING Y N 14 V0I C7 C8 DOUB Y N 15 V0I C8 N1 SING Y N 16 V0I N3 C8 SING Y N 17 V0I C9 N3 DOUB Y N 18 V0I N4 C9 SING Y N 19 V0I C10 N4 DOUB Y N 20 V0I C7 C10 SING Y N 21 V0I N5 C10 SING N N 22 V0I N C11 SING N N 23 V0I C11 C12 SING N N 24 V0I C12 C13 TRIP N N 25 V0I C13 C14 SING N N 26 V0I C14 N6 DOUB Y N 27 V0I N6 C15 SING Y N 28 V0I C15 C16 DOUB Y N 29 V0I C16 N7 SING Y N 30 V0I C14 N7 SING Y N 31 V0I N7 C17 SING N N 32 V0I C17 O3 SING N N 33 V0I O3 C18 SING N N 34 V0I C19 C18 SING N N 35 V0I C20 C19 SING N N 36 V0I C17 C20 SING N N 37 V0I O4 C20 SING N N 38 V0I O5 C19 SING N N 39 V0I C18 C21 SING N N 40 V0I C21 N8 SING N N 41 V0I N8 S SING N N 42 V0I O6 S DOUB N N 43 V0I S O7 DOUB N N 44 V0I N9 S SING N N 45 V0I C22 N9 SING N N 46 V0I C23 N9 SING N N 47 V0I N10 C16 SING Y N 48 V0I C24 N10 DOUB Y N 49 V0I N11 C24 SING Y N 50 V0I C25 N11 DOUB Y N 51 V0I C15 C25 SING Y N 52 V0I N12 C25 SING N N 53 V0I C H9 SING N N 54 V0I C H10 SING N N 55 V0I C H8 SING N N 56 V0I C1 H12 SING N N 57 V0I C1 H11 SING N N 58 V0I C11 H20 SING N N 59 V0I C11 H19 SING N N 60 V0I C17 H4 SING N N 61 V0I C18 H5 SING N N 62 V0I C19 H6 SING N N 63 V0I C2 H SING N N 64 V0I C20 H7 SING N N 65 V0I C21 H23 SING N N 66 V0I C21 H24 SING N N 67 V0I C22 H28 SING N N 68 V0I C22 H26 SING N N 69 V0I C22 H27 SING N N 70 V0I C23 H31 SING N N 71 V0I C23 H30 SING N N 72 V0I C23 H29 SING N N 73 V0I C24 H32 SING N N 74 V0I C3 H1 SING N N 75 V0I C4 H2 SING N N 76 V0I C5 H3 SING N N 77 V0I C6 H15 SING N N 78 V0I C9 H16 SING N N 79 V0I N12 H34 SING N N 80 V0I N12 H33 SING N N 81 V0I N5 H18 SING N N 82 V0I N5 H17 SING N N 83 V0I N8 H25 SING N N 84 V0I O1 H13 SING N N 85 V0I O2 H14 SING N N 86 V0I O4 H21 SING N N 87 V0I O5 H22 SING N N 88 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V0I InChI InChI 1.06 "InChI=1S/C26H35N13O8S/c1-36(2)48(44,45)34-7-12-17(40)20(43)26(46-12)39-14(35-16-22(28)30-10-32-24(16)39)5-4-6-37(3)8-13-18(41)19(42)25(47-13)38-11-33-15-21(27)29-9-31-23(15)38/h9-13,17-20,25-26,34,40-43H,6-8H2,1-3H3,(H2,27,29,31)(H2,28,30,32)/t12-,13+,17-,18-,19-,20-,25+,26+/m1/s1" V0I InChIKey InChI 1.06 LGNKFLUWHXMZRD-YPYLWAKUSA-N V0I SMILES_CANONICAL CACTVS 3.385 "CN(C)[S](=O)(=O)NC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2c(nc3c(N)ncnc23)C#CCN(C)C[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56" V0I SMILES CACTVS 3.385 "CN(C)[S](=O)(=O)NC[CH]1O[CH]([CH](O)[CH]1O)n2c(nc3c(N)ncnc23)C#CCN(C)C[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56" V0I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)S(=O)(=O)NC[C@@H]1[C@H]([C@H]([C@@H](O1)n2c(nc3c2ncnc3N)C#CCN(C)C[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O)O)O" V0I SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)S(=O)(=O)NCC1C(C(C(O1)n2c(nc3c2ncnc3N)C#CCN(C)CC4C(C(C(O4)n5cnc6c5ncnc6N)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id V0I _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-methyl-amino]prop-1-ynyl]-6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-[(dimethylsulfamoylamino)methyl]-3,4-bis(oxidanyl)oxolan-2-yl]purine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V0I "Create component" 2023-09-07 PDBE V0I "Initial release" 2025-03-19 RCSB #