data_V0Y # _chem_comp.id V0Y _chem_comp.name "4-[2-(4-aminopiperidin-1-yl)-5-(3-fluoro-4-methoxyphenyl)-1-methyl-6-oxo-1,6-dihydropyrimidin-4-yl]-2-fluorobenzonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H23 F2 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-06-11 _chem_comp.pdbx_modified_date 2020-10-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 451.469 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V0Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6W4K _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V0Y N15 N1 N 0 1 N N N -68.898 -31.849 -39.264 -3.368 -5.662 -0.096 N15 V0Y 1 V0Y C14 C1 C 0 1 N N N -68.473 -32.572 -38.437 -2.718 -4.730 -0.094 C14 V0Y 2 V0Y C10 C2 C 0 1 Y N N -67.977 -33.497 -37.654 -1.899 -3.556 -0.092 C10 V0Y 3 V0Y C11 C3 C 0 1 Y N N -68.812 -34.561 -37.347 -2.189 -2.501 0.782 C11 V0Y 4 V0Y F13 F1 F 0 1 N N N -70.065 -34.426 -37.834 -3.241 -2.591 1.624 F13 V0Y 5 V0Y C12 C4 C 0 1 Y N N -68.412 -35.622 -36.526 -1.398 -1.371 0.782 C12 V0Y 6 V0Y C9 C5 C 0 1 Y N N -66.657 -33.492 -37.206 -0.806 -3.464 -0.958 C9 V0Y 7 V0Y C8 C6 C 0 1 Y N N -66.219 -34.569 -36.438 -0.018 -2.336 -0.956 C8 V0Y 8 V0Y C7 C7 C 0 1 Y N N -67.085 -35.615 -36.057 -0.310 -1.280 -0.088 C7 V0Y 9 V0Y C6 C8 C 0 1 N N N -66.390 -36.679 -35.253 0.538 -0.068 -0.088 C6 V0Y 10 V0Y C5 C9 C 0 1 N N N -66.602 -38.108 -35.424 -0.048 1.201 -0.140 C5 V0Y 11 V0Y C16 C10 C 0 1 Y N N -67.646 -38.728 -36.365 -1.519 1.355 -0.197 C16 V0Y 12 V0Y C17 C11 C 0 1 Y N N -68.811 -39.426 -36.030 -2.204 1.929 0.876 C17 V0Y 13 V0Y C18 C12 C 0 1 Y N N -69.735 -39.893 -37.000 -3.576 2.071 0.818 C18 V0Y 14 V0Y F22 F2 F 0 1 N N N -70.875 -40.563 -36.645 -4.241 2.627 1.855 F22 V0Y 15 V0Y C19 C13 C 0 1 Y N N -69.468 -39.632 -38.330 -4.274 1.643 -0.305 C19 V0Y 16 V0Y O23 O1 O 0 1 N N N -70.221 -39.989 -39.396 -5.625 1.785 -0.359 O23 V0Y 17 V0Y C24 C14 C 0 1 N N N -70.707 -41.326 -39.345 -6.279 1.324 -1.543 C24 V0Y 18 V0Y C20 C15 C 0 1 Y N N -68.345 -38.991 -38.661 -3.595 1.072 -1.372 C20 V0Y 19 V0Y C21 C16 C 0 1 Y N N -67.458 -38.554 -37.707 -2.224 0.931 -1.324 C21 V0Y 20 V0Y C4 C17 C 0 1 N N N -65.803 -38.929 -34.663 0.800 2.335 -0.138 C4 V0Y 21 V0Y O25 O2 O 0 1 N N N -65.968 -40.167 -34.713 0.333 3.461 -0.182 O25 V0Y 22 V0Y N1 N2 N 0 1 N N N -65.432 -36.156 -34.423 1.871 -0.178 -0.031 N1 V0Y 23 V0Y C2 C18 C 0 1 N N N -64.674 -36.976 -33.651 2.647 0.885 -0.029 C2 V0Y 24 V0Y N3 N3 N 0 1 N N N -64.831 -38.368 -33.809 2.135 2.145 -0.085 N3 V0Y 25 V0Y C26 C19 C 0 1 N N N -63.987 -39.236 -32.995 3.037 3.299 -0.081 C26 V0Y 26 V0Y N27 N4 N 0 1 N N N -63.653 -36.557 -32.732 4.005 0.719 0.030 N27 V0Y 27 V0Y C28 C20 C 0 1 N N N -63.693 -36.929 -31.372 4.685 0.567 1.323 C28 V0Y 28 V0Y C29 C21 C 0 1 N N N -62.282 -36.991 -30.796 5.530 -0.711 1.289 C29 V0Y 29 V0Y C30 C22 C 0 1 N N N -61.515 -35.689 -30.982 6.473 -0.661 0.085 C30 V0Y 30 V0Y N33 N5 N 0 1 N N N -60.196 -35.814 -30.766 7.308 -1.870 0.068 N33 V0Y 31 V0Y C31 C23 C 0 1 N N N -61.753 -35.123 -32.361 5.653 -0.590 -1.205 C31 V0Y 32 V0Y C32 C24 C 0 1 N N N -63.196 -35.251 -32.852 4.809 0.683 -1.200 C32 V0Y 33 V0Y H1 H1 H 0 1 N N N -69.096 -36.416 -36.263 -1.620 -0.556 1.455 H1 V0Y 34 V0Y H2 H2 H 0 1 N N N -65.992 -32.676 -37.447 -0.579 -4.279 -1.630 H2 V0Y 35 V0Y H3 H3 H 0 1 N N N -65.186 -34.604 -36.125 0.827 -2.266 -1.625 H3 V0Y 36 V0Y H4 H4 H 0 1 N N N -69.016 -39.618 -34.987 -1.662 2.262 1.748 H4 V0Y 37 V0Y H5 H5 H 0 1 N N N -71.306 -41.534 -40.244 -7.352 1.495 -1.455 H5 V0Y 38 V0Y H6 H6 H 0 1 N N N -69.857 -42.023 -39.302 -5.894 1.866 -2.406 H6 V0Y 39 V0Y H7 H7 H 0 1 N N N -71.333 -41.455 -38.450 -6.091 0.257 -1.670 H7 V0Y 40 V0Y H8 H8 H 0 1 N N N -68.128 -38.812 -39.704 -4.141 0.741 -2.243 H8 V0Y 41 V0Y H9 H9 H 0 1 N N N -66.564 -38.045 -38.036 -1.696 0.487 -2.155 H9 V0Y 42 V0Y H10 H10 H 0 1 N N N -63.296 -38.622 -32.399 2.458 4.213 -0.214 H10 V0Y 43 V0Y H11 H11 H 0 1 N N N -64.618 -39.835 -32.322 3.570 3.341 0.868 H11 V0Y 44 V0Y H12 H12 H 0 1 N N N -63.411 -39.906 -33.650 3.754 3.203 -0.896 H12 V0Y 45 V0Y H13 H13 H 0 1 N N N -64.281 -36.188 -30.811 5.331 1.427 1.500 H13 V0Y 46 V0Y H14 H14 H 0 1 N N N -64.166 -37.918 -31.281 3.944 0.494 2.119 H14 V0Y 47 V0Y H15 H15 H 0 1 N N N -62.350 -37.209 -29.720 6.115 -0.785 2.206 H15 V0Y 48 V0Y H16 H16 H 0 1 N N N -61.731 -37.799 -31.300 4.875 -1.578 1.203 H16 V0Y 49 V0Y H17 H17 H 0 1 N N N -61.932 -34.968 -30.263 7.111 0.220 0.159 H17 V0Y 50 V0Y H18 H18 H 0 1 N N N -60.041 -36.189 -29.852 7.941 -1.861 -0.719 H18 V0Y 51 V0Y H19 H19 H 0 1 N N N -59.803 -36.429 -31.449 7.812 -1.973 0.935 H19 V0Y 52 V0Y H21 H21 H 0 1 N N N -61.100 -35.654 -33.069 6.325 -0.579 -2.064 H21 V0Y 53 V0Y H22 H22 H 0 1 N N N -61.487 -34.056 -32.346 4.998 -1.459 -1.268 H22 V0Y 54 V0Y H23 H23 H 0 1 N N N -63.243 -34.950 -33.909 4.150 0.687 -2.068 H23 V0Y 55 V0Y H24 H24 H 0 1 N N N -63.839 -34.589 -32.253 5.465 1.553 -1.233 H24 V0Y 56 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V0Y O23 C24 SING N N 1 V0Y O23 C19 SING N N 2 V0Y N15 C14 TRIP N N 3 V0Y C20 C19 DOUB Y N 4 V0Y C20 C21 SING Y N 5 V0Y C14 C10 SING N N 6 V0Y C19 C18 SING Y N 7 V0Y F13 C11 SING N N 8 V0Y C21 C16 DOUB Y N 9 V0Y C10 C11 DOUB Y N 10 V0Y C10 C9 SING Y N 11 V0Y C11 C12 SING Y N 12 V0Y C9 C8 DOUB Y N 13 V0Y C18 F22 SING N N 14 V0Y C18 C17 DOUB Y N 15 V0Y C12 C7 DOUB Y N 16 V0Y C8 C7 SING Y N 17 V0Y C16 C17 SING Y N 18 V0Y C16 C5 SING N N 19 V0Y C7 C6 SING N N 20 V0Y C5 C6 DOUB N N 21 V0Y C5 C4 SING N N 22 V0Y C6 N1 SING N N 23 V0Y O25 C4 DOUB N N 24 V0Y C4 N3 SING N N 25 V0Y N1 C2 DOUB N N 26 V0Y N3 C2 SING N N 27 V0Y N3 C26 SING N N 28 V0Y C2 N27 SING N N 29 V0Y C32 N27 SING N N 30 V0Y C32 C31 SING N N 31 V0Y N27 C28 SING N N 32 V0Y C31 C30 SING N N 33 V0Y C28 C29 SING N N 34 V0Y C30 C29 SING N N 35 V0Y C30 N33 SING N N 36 V0Y C12 H1 SING N N 37 V0Y C9 H2 SING N N 38 V0Y C8 H3 SING N N 39 V0Y C17 H4 SING N N 40 V0Y C24 H5 SING N N 41 V0Y C24 H6 SING N N 42 V0Y C24 H7 SING N N 43 V0Y C20 H8 SING N N 44 V0Y C21 H9 SING N N 45 V0Y C26 H10 SING N N 46 V0Y C26 H11 SING N N 47 V0Y C26 H12 SING N N 48 V0Y C28 H13 SING N N 49 V0Y C28 H14 SING N N 50 V0Y C29 H15 SING N N 51 V0Y C29 H16 SING N N 52 V0Y C30 H17 SING N N 53 V0Y N33 H18 SING N N 54 V0Y N33 H19 SING N N 55 V0Y C31 H21 SING N N 56 V0Y C31 H22 SING N N 57 V0Y C32 H23 SING N N 58 V0Y C32 H24 SING N N 59 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V0Y SMILES ACDLabs 12.01 "N#Cc1c(cc(cc1)C=3N=C(N2CCC(N)CC2)N(C(C=3c4cc(F)c(OC)cc4)=O)C)F" V0Y InChI InChI 1.03 "InChI=1S/C24H23F2N5O2/c1-30-23(32)21(14-5-6-20(33-2)19(26)11-14)22(15-3-4-16(13-27)18(25)12-15)29-24(30)31-9-7-17(28)8-10-31/h3-6,11-12,17H,7-10,28H2,1-2H3" V0Y InChIKey InChI 1.03 NBAIXBAUHIQQGF-UHFFFAOYSA-N V0Y SMILES_CANONICAL CACTVS 3.385 "COc1ccc(cc1F)C2=C(N=C(N(C)C2=O)N3CCC(N)CC3)c4ccc(C#N)c(F)c4" V0Y SMILES CACTVS 3.385 "COc1ccc(cc1F)C2=C(N=C(N(C)C2=O)N3CCC(N)CC3)c4ccc(C#N)c(F)c4" V0Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1C(=O)C(=C(N=C1N2CCC(CC2)N)c3ccc(c(c3)F)C#N)c4ccc(c(c4)F)OC" V0Y SMILES "OpenEye OEToolkits" 2.0.7 "CN1C(=O)C(=C(N=C1N2CCC(CC2)N)c3ccc(c(c3)F)C#N)c4ccc(c(c4)F)OC" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier V0Y "SYSTEMATIC NAME" ACDLabs 12.01 "4-[2-(4-aminopiperidin-1-yl)-5-(3-fluoro-4-methoxyphenyl)-1-methyl-6-oxo-1,6-dihydropyrimidin-4-yl]-2-fluorobenzonitrile" V0Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[2-(4-azanylpiperidin-1-yl)-5-(3-fluoranyl-4-methoxy-phenyl)-1-methyl-6-oxidanylidene-pyrimidin-4-yl]-2-fluoranyl-benzenecarbonitrile" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V0Y "Create component" 2020-06-11 RCSB V0Y "Initial release" 2020-10-21 RCSB ##