data_V1K # _chem_comp.id V1K _chem_comp.name "2-chloranyl-6-methoxy-1-(4-methylphenyl)sulfonyl-benzimidazole" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H13 Cl N2 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-06 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 336.793 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V1K _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7O3P _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V1K C02 C1 C 0 1 N N N N N N -19.675 -20.770 4.560 -4.669 3.066 -1.598 C02 V1K 1 V1K C03 C2 C 0 1 Y N N N N N -18.672 -20.903 3.434 -3.713 2.164 -0.861 C03 V1K 2 V1K C04 C3 C 0 1 Y N N N N N -18.684 -19.860 2.526 -3.940 0.801 -0.821 C04 V1K 3 V1K C05 C4 C 0 1 Y N N N N N -17.816 -19.881 1.466 -3.064 -0.027 -0.145 C05 V1K 4 V1K C06 C5 C 0 1 Y N N N N N -16.942 -20.948 1.339 -1.960 0.509 0.492 C06 V1K 5 V1K C09 C6 C 0 1 Y N N N N N -17.367 -22.656 -1.599 1.511 -0.373 0.016 C09 V1K 6 V1K C10 C7 C 0 1 Y N N N N N -16.822 -23.921 -1.249 2.110 0.778 0.507 C10 V1K 7 V1K C11 C8 C 0 1 Y N N N N N -17.318 -25.112 -1.802 3.348 1.165 0.025 C11 V1K 8 V1K C13 C9 C 0 1 N N N N N N -17.411 -27.517 -1.843 5.216 2.635 -0.036 C13 V1K 9 V1K C14 C10 C 0 1 Y N N N N N -18.368 -25.060 -2.722 3.992 0.406 -0.947 C14 V1K 10 V1K C15 C11 C 0 1 Y N N N N N -18.904 -23.820 -3.066 3.413 -0.730 -1.439 C15 V1K 11 V1K C16 C12 C 0 1 Y N N N N N -18.391 -22.616 -2.494 2.167 -1.141 -0.961 C16 V1K 12 V1K C18 C13 C 0 1 Y N N N N N -17.931 -20.545 -1.884 0.274 -2.122 -0.526 C18 V1K 13 V1K C22 C14 C 0 1 Y N N N N N -16.934 -22.021 2.227 -1.732 1.872 0.451 C22 V1K 14 V1K C23 C15 C 0 1 Y N N N N N -17.808 -21.995 3.309 -2.606 2.698 -0.230 C23 V1K 15 V1K N08 N1 N 0 1 Y N N N N N -17.082 -21.364 -1.249 0.318 -1.021 0.274 N08 V1K 16 V1K N17 N2 N 0 1 Y N N N N N -18.721 -21.305 -2.654 1.357 -2.196 -1.245 N17 V1K 17 V1K O12 O1 O 0 1 N N N N N N -16.751 -26.347 -1.436 3.938 2.292 0.504 O12 V1K 18 V1K O20 O2 O 0 1 N N N N N N -15.330 -19.537 -0.302 -0.186 0.268 2.318 O20 V1K 19 V1K O21 O3 O 0 1 N N N N N N -14.750 -21.793 -0.165 -1.576 -1.714 1.696 O21 V1K 20 V1K S07 S1 S 0 1 N N N N N N -15.891 -20.880 -0.124 -0.843 -0.546 1.355 S07 V1K 21 V1K CL1 CL1 CL 0 0 N N N N N N -18.002 -18.755 -1.765 -1.030 -3.267 -0.572 CL1 V1K 22 V1K H1 H1 H 0 1 N N N N N N -20.625 -21.238 4.263 -5.451 3.400 -0.917 H1 V1K 23 V1K H2 H2 H 0 1 N N N N N N -19.286 -21.271 5.459 -4.129 3.930 -1.984 H2 V1K 24 V1K H3 H3 H 0 1 N N N N N N -19.843 -19.705 4.777 -5.119 2.519 -2.427 H3 V1K 25 V1K H4 H4 H 0 1 N N N N N N -19.371 -19.036 2.651 -4.803 0.382 -1.318 H4 V1K 26 V1K H5 H5 H 0 1 N N N N N N -17.813 -19.080 0.742 -3.241 -1.092 -0.113 H5 V1K 27 V1K H6 H6 H 0 1 N N N N N N -16.007 -23.967 -0.541 1.612 1.370 1.261 H6 V1K 28 V1K H7 H7 H 0 1 N N N N N N -16.854 -28.396 -1.486 5.573 3.553 0.431 H7 V1K 29 V1K H8 H8 H 0 1 N N N N N N -18.427 -27.530 -1.421 5.922 1.829 0.162 H8 V1K 30 V1K H9 H9 H 0 1 N N N N N N -17.470 -27.542 -2.941 5.127 2.785 -1.112 H9 V1K 31 V1K H10 H10 H 0 1 N N N N N N -18.759 -25.967 -3.160 4.957 0.717 -1.317 H10 V1K 32 V1K H11 H11 H 0 1 N N N N N N -19.718 -23.769 -3.774 3.921 -1.311 -2.194 H11 V1K 33 V1K H12 H12 H 0 1 N N N N N N -16.264 -22.855 2.079 -0.870 2.290 0.949 H12 V1K 34 V1K H13 H13 H 0 1 N N N N N N -17.819 -22.797 4.033 -2.428 3.763 -0.262 H13 V1K 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V1K C15 C14 DOUB Y N 1 V1K C15 C16 SING Y N 2 V1K C14 C11 SING Y N 3 V1K N17 C16 SING Y N 4 V1K N17 C18 DOUB Y N 5 V1K C16 C09 DOUB Y N 6 V1K C18 CL1 SING N N 7 V1K C18 N08 SING Y N 8 V1K C13 O12 SING N N 9 V1K C11 O12 SING N N 10 V1K C11 C10 DOUB Y N 11 V1K C09 C10 SING Y N 12 V1K C09 N08 SING Y N 13 V1K N08 S07 SING N N 14 V1K O20 S07 DOUB N N 15 V1K O21 S07 DOUB N N 16 V1K S07 C06 SING N N 17 V1K C06 C05 DOUB Y N 18 V1K C06 C22 SING Y N 19 V1K C05 C04 SING Y N 20 V1K C22 C23 DOUB Y N 21 V1K C04 C03 DOUB Y N 22 V1K C23 C03 SING Y N 23 V1K C03 C02 SING N N 24 V1K C02 H1 SING N N 25 V1K C02 H2 SING N N 26 V1K C02 H3 SING N N 27 V1K C04 H4 SING N N 28 V1K C05 H5 SING N N 29 V1K C10 H6 SING N N 30 V1K C13 H7 SING N N 31 V1K C13 H8 SING N N 32 V1K C13 H9 SING N N 33 V1K C14 H10 SING N N 34 V1K C15 H11 SING N N 35 V1K C22 H12 SING N N 36 V1K C23 H13 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V1K InChI InChI 1.03 "InChI=1S/C15H13ClN2O3S/c1-10-3-6-12(7-4-10)22(19,20)18-14-9-11(21-2)5-8-13(14)17-15(18)16/h3-9H,1-2H3" V1K InChIKey InChI 1.03 WYUZKMIXXDZEOS-UHFFFAOYSA-N V1K SMILES_CANONICAL CACTVS 3.385 "COc1ccc2nc(Cl)n(c2c1)[S](=O)(=O)c3ccc(C)cc3" V1K SMILES CACTVS 3.385 "COc1ccc2nc(Cl)n(c2c1)[S](=O)(=O)c3ccc(C)cc3" V1K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1)S(=O)(=O)n2c3cc(ccc3nc2Cl)OC" V1K SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1)S(=O)(=O)n2c3cc(ccc3nc2Cl)OC" # _pdbx_chem_comp_identifier.comp_id V1K _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-chloranyl-6-methoxy-1-(4-methylphenyl)sulfonyl-benzimidazole" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V1K "Create component" 2021-04-06 PDBE V1K "Initial release" 2021-06-09 RCSB V1K "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id V1K _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C02 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #