data_V1W # _chem_comp.id V1W _chem_comp.name v-coelenterazine _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H21 N3 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-06 _chem_comp.pdbx_modified_date 2022-02-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 479.483 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V1W _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7O3U _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V1W C1 C1 C 0 1 N N N 14.266 -2.978 -17.464 1.208 -2.242 0.105 C1 V1W 1 V1W C10 C2 C 0 1 Y N N 16.243 0.779 -20.070 -3.531 -0.847 -0.172 C10 V1W 2 V1W C11 C3 C 0 1 Y N N 18.148 2.110 -19.408 -5.319 -2.480 -0.405 C11 V1W 3 V1W C12 C4 C 0 1 Y N N 18.057 2.780 -20.625 -6.229 -1.446 -0.411 C12 V1W 4 V1W C13 C5 C 0 1 Y N N 17.037 2.492 -21.473 -5.804 -0.121 -0.300 C13 V1W 5 V1W C14 C6 C 0 1 Y N N 16.117 1.493 -21.295 -4.480 0.180 -0.182 C14 V1W 6 V1W C15 C7 C 0 1 N N N 12.386 -1.920 -21.676 0.029 2.435 0.294 C15 V1W 7 V1W C16 C8 C 0 1 Y N N 11.263 -0.864 -21.729 -1.182 3.331 0.258 C16 V1W 8 V1W C17 C9 C 0 1 Y N N 9.844 -1.274 -21.376 -1.827 3.670 1.432 C17 V1W 9 V1W C18 C10 C 0 1 Y N N 8.826 -0.419 -21.379 -2.938 4.492 1.399 C18 V1W 10 V1W C19 C11 C 0 1 Y N N 9.091 1.021 -21.750 -3.404 4.975 0.190 C19 V1W 11 V1W C2 C12 C 0 1 N N N 13.536 -2.330 -19.490 0.600 -0.080 0.185 C2 V1W 12 V1W C20 C13 C 0 1 Y N N 10.338 1.377 -22.039 -2.759 4.636 -0.984 C20 V1W 13 V1W C21 C14 C 0 1 Y N N 11.511 0.394 -22.043 -1.645 3.819 -0.950 C21 V1W 14 V1W C22 C15 C 0 1 N N N 11.924 -3.804 -16.941 3.362 -1.548 -0.962 C22 V1W 15 V1W C23 C16 C 0 1 Y N N 12.330 -4.384 -15.580 4.577 -0.672 -0.798 C23 V1W 16 V1W C24 C17 C 0 1 Y N N 12.641 -3.556 -14.604 4.565 0.623 -1.283 C24 V1W 17 V1W C25 C18 C 0 1 Y N N 13.027 -4.170 -13.239 5.677 1.428 -1.134 C25 V1W 18 V1W C26 C19 C 0 1 Y N N 13.062 -5.478 -13.083 6.808 0.937 -0.498 C26 V1W 19 V1W C27 C20 C 0 1 Y N N 12.702 -6.404 -14.233 6.818 -0.363 -0.012 C27 V1W 20 V1W C28 C21 C 0 1 Y N N 12.366 -5.892 -15.408 5.701 -1.162 -0.159 C28 V1W 21 V1W C3 C22 C 0 1 N N S 13.131 -3.860 -17.882 2.439 -1.370 0.245 C3 V1W 22 V1W C4 C23 C 0 1 Y N N 15.428 -1.007 -18.644 -1.201 -1.630 -0.043 C4 V1W 23 V1W C5 C24 C 0 1 Y N N 15.382 -0.261 -19.813 -2.100 -0.560 -0.047 C5 V1W 24 V1W C6 C25 C 0 1 N N N 13.455 -1.598 -20.632 -0.407 0.997 0.174 C6 V1W 25 V1W C7 C26 C 0 1 Y N N 16.399 -0.688 -17.734 -1.666 -2.943 -0.156 C7 V1W 26 V1W C8 C27 C 0 1 Y N N 17.307 0.344 -17.921 -2.989 -3.224 -0.273 C8 V1W 27 V1W C9 C28 C 0 1 Y N N 17.249 1.061 -19.157 -3.949 -2.194 -0.285 C9 V1W 28 V1W N1 N1 N 0 1 N N N 14.498 -2.003 -18.560 0.164 -1.385 0.074 N1 V1W 29 V1W N2 N2 N 0 1 N N N 12.657 -3.390 -19.123 1.903 -0.003 0.287 N2 V1W 30 V1W N3 N3 N 0 1 N N N 14.403 -0.576 -20.735 -1.671 0.709 0.061 N3 V1W 31 V1W O1 O1 O 0 1 N N N 18.961 3.818 -20.944 -7.555 -1.720 -0.528 O1 V1W 32 V1W O2 O2 O 0 1 N N N 15.089 -3.050 -16.346 1.169 -3.451 0.031 O2 V1W 33 V1W O3 O3 O 0 1 N N N 13.611 -5.149 -18.091 3.134 -1.676 1.455 O3 V1W 34 V1W O4 O4 O 0 1 N N N 15.026 -5.073 -18.041 2.298 -1.600 2.661 O4 V1W 35 V1W O5 O5 O 0 1 N N N 13.441 -6.006 -11.828 7.904 1.727 -0.351 O5 V1W 36 V1W H1 H1 H 0 1 N N N 18.891 2.390 -18.676 -5.655 -3.502 -0.492 H1 V1W 37 V1W H2 H2 H 0 1 N N N 16.943 3.100 -22.361 -6.534 0.676 -0.307 H2 V1W 38 V1W H3 H3 H 0 1 N N N 15.356 1.265 -22.027 -4.165 1.210 -0.096 H3 V1W 39 V1W H4 H4 H 0 1 N N N 11.940 -2.895 -21.432 0.691 2.684 -0.535 H4 V1W 40 V1W H5 H5 H 0 1 N N N 12.865 -1.973 -22.665 0.558 2.577 1.237 H5 V1W 41 V1W H6 H6 H 0 1 N N N 9.654 -2.304 -21.111 -1.463 3.293 2.376 H6 V1W 42 V1W H7 H7 H 0 1 N N N 7.830 -0.747 -21.121 -3.442 4.757 2.317 H7 V1W 43 V1W H8 H8 H 0 1 N N N 8.288 1.742 -21.780 -4.272 5.617 0.164 H8 V1W 44 V1W H9 H9 H 0 1 N N N 10.533 2.411 -22.283 -3.124 5.013 -1.929 H9 V1W 45 V1W H10 H10 H 0 1 N N N 12.510 0.719 -22.295 -1.141 3.554 -1.868 H10 V1W 46 V1W H11 H11 H 0 1 N N N 11.601 -2.760 -16.816 2.830 -1.265 -1.871 H11 V1W 47 V1W H12 H12 H 0 1 N N N 11.098 -4.396 -17.363 3.673 -2.590 -1.032 H12 V1W 48 V1W H13 H13 H 0 1 N N N 12.627 -2.486 -14.752 3.684 1.005 -1.778 H13 V1W 49 V1W H14 H14 H 0 1 N N N 13.269 -3.523 -12.409 5.667 2.440 -1.514 H14 V1W 50 V1W H15 H15 H 0 1 N N N 12.720 -7.475 -14.093 7.696 -0.748 0.484 H15 V1W 51 V1W H16 H16 H 0 1 N N N 12.120 -6.541 -16.235 5.706 -2.172 0.223 H16 V1W 52 V1W H17 H17 H 0 1 N N N 16.462 -1.268 -16.825 -0.954 -3.756 -0.151 H17 V1W 53 V1W H18 H18 H 0 1 N N N 18.031 0.597 -17.161 -3.309 -4.252 -0.359 H18 V1W 54 V1W H20 H20 H 0 1 N N N 19.612 3.894 -20.256 -8.005 -1.852 0.318 H20 V1W 55 V1W H21 H21 H 0 1 N N N 15.285 -4.371 -17.455 2.769 -1.807 3.480 H21 V1W 56 V1W H22 H22 H 0 1 N N N 13.631 -5.294 -11.229 7.910 2.243 0.467 H22 V1W 57 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V1W C21 C20 DOUB Y N 1 V1W C21 C16 SING Y N 2 V1W C20 C19 SING Y N 3 V1W C19 C18 DOUB Y N 4 V1W C16 C15 SING N N 5 V1W C16 C17 DOUB Y N 6 V1W C15 C6 SING N N 7 V1W C13 C14 DOUB Y N 8 V1W C13 C12 SING Y N 9 V1W C18 C17 SING Y N 10 V1W C14 C10 SING Y N 11 V1W O1 C12 SING N N 12 V1W N3 C6 DOUB N N 13 V1W N3 C5 SING N N 14 V1W C6 C2 SING N N 15 V1W C12 C11 DOUB Y N 16 V1W C10 C5 DOUB Y N 17 V1W C10 C9 SING Y N 18 V1W C5 C4 SING Y N 19 V1W C2 N2 DOUB N N 20 V1W C2 N1 SING N N 21 V1W C11 C9 SING Y N 22 V1W C9 C8 DOUB Y N 23 V1W N2 C3 SING N N 24 V1W C4 N1 SING N N 25 V1W C4 C7 DOUB Y N 26 V1W N1 C1 SING N N 27 V1W O3 O4 SING N N 28 V1W O3 C3 SING N N 29 V1W C8 C7 SING Y N 30 V1W C3 C1 SING N N 31 V1W C3 C22 SING N N 32 V1W C1 O2 DOUB N N 33 V1W C22 C23 SING N N 34 V1W C23 C28 DOUB Y N 35 V1W C23 C24 SING Y N 36 V1W C28 C27 SING Y N 37 V1W C24 C25 DOUB Y N 38 V1W C27 C26 DOUB Y N 39 V1W C25 C26 SING Y N 40 V1W C26 O5 SING N N 41 V1W C11 H1 SING N N 42 V1W C13 H2 SING N N 43 V1W C14 H3 SING N N 44 V1W C15 H4 SING N N 45 V1W C15 H5 SING N N 46 V1W C17 H6 SING N N 47 V1W C18 H7 SING N N 48 V1W C19 H8 SING N N 49 V1W C20 H9 SING N N 50 V1W C21 H10 SING N N 51 V1W C22 H11 SING N N 52 V1W C22 H12 SING N N 53 V1W C24 H13 SING N N 54 V1W C25 H14 SING N N 55 V1W C27 H15 SING N N 56 V1W C28 H16 SING N N 57 V1W C7 H17 SING N N 58 V1W C8 H18 SING N N 59 V1W O1 H20 SING N N 60 V1W O4 H21 SING N N 61 V1W O5 H22 SING N N 62 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V1W InChI InChI 1.03 "InChI=1S/C28H21N3O5/c32-20-9-6-18(7-10-20)16-28(36-35)27(34)31-24-13-8-19-15-21(33)11-12-22(19)25(24)29-23(26(31)30-28)14-17-4-2-1-3-5-17/h1-13,15,32-33,35H,14,16H2/t28-/m0/s1" V1W InChIKey InChI 1.03 ZSLLQPODRCGPLM-NDEPHWFRSA-N V1W SMILES_CANONICAL CACTVS 3.385 "OO[C@]1(Cc2ccc(O)cc2)N=C3N(C1=O)c4ccc5cc(O)ccc5c4N=C3Cc6ccccc6" V1W SMILES CACTVS 3.385 "OO[C]1(Cc2ccc(O)cc2)N=C3N(C1=O)c4ccc5cc(O)ccc5c4N=C3Cc6ccccc6" V1W SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CC2=Nc3c4ccc(cc4ccc3N5C2=N[C@@](C5=O)(Cc6ccc(cc6)O)OO)O" V1W SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CC2=Nc3c4ccc(cc4ccc3N5C2=NC(C5=O)(Cc6ccc(cc6)O)OO)O" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V1W "Create component" 2021-04-06 PDBE V1W "Initial release" 2022-02-09 RCSB ##