data_V2G # _chem_comp.id V2G _chem_comp.name "2-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]amino]ethanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H17 N6 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-06-19 _chem_comp.pdbx_modified_date 2020-11-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 404.273 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V2G _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6XHC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V2G N N1 N 0 1 N N N 12.558 4.554 21.778 5.049 -0.944 0.408 N V2G 1 V2G CA C1 C 0 1 N N N 12.747 3.709 22.953 5.431 -0.231 -0.818 CA V2G 2 V2G C C2 C 0 1 N N N 14.196 3.288 22.915 5.807 1.188 -0.478 C V2G 3 V2G O O1 O 0 1 N N N 14.451 2.114 23.270 6.192 2.032 -1.448 O V2G 4 V2G OXT O2 O 0 1 N N N 15.008 4.175 22.614 5.761 1.566 0.669 OXT V2G 5 V2G P P1 P 0 1 N N N 11.316 5.406 21.685 3.645 -1.842 0.171 P V2G 6 V2G O1 O3 O 0 1 N N N 11.042 5.999 23.023 3.888 -2.920 -0.999 O1 V2G 7 V2G O2 O4 O 0 1 N N N 11.579 6.283 20.513 3.291 -2.545 1.424 O2 V2G 8 V2G "O5'" O5 O 0 1 N N N 10.195 4.229 21.421 2.443 -0.856 -0.250 "O5'" V2G 9 V2G "C5'" C3 C 0 1 N N N 9.148 4.348 20.450 1.847 0.075 0.656 "C5'" V2G 10 V2G "C4'" C4 C 0 1 N N R 9.711 5.143 19.287 0.741 0.849 -0.064 "C4'" V2G 11 V2G "O4'" O6 O 0 1 N N N 10.851 4.499 18.675 -0.339 -0.039 -0.399 "O4'" V2G 12 V2G "C3'" C5 C 0 1 N N S 8.741 5.241 18.159 0.171 1.936 0.868 "C3'" V2G 13 V2G "O3'" O7 O 0 1 N N N 7.706 6.196 18.495 0.350 3.232 0.293 "O3'" V2G 14 V2G "C2'" C6 C 0 1 N N R 9.696 5.748 17.063 -1.335 1.594 0.975 "C2'" V2G 15 V2G "O2'" O8 O 0 1 N N N 9.570 7.162 16.856 -2.133 2.779 0.929 "O2'" V2G 16 V2G "C1'" C7 C 0 1 N N R 11.123 5.386 17.591 -1.560 0.724 -0.293 "C1'" V2G 17 V2G N9 N2 N 0 1 Y N N 11.864 4.668 16.552 -2.711 -0.165 -0.110 N9 V2G 18 V2G C8 C8 C 0 1 Y N N 11.633 3.424 16.110 -2.671 -1.459 0.314 C8 V2G 19 V2G N7 N3 N 0 1 Y N N 12.486 3.188 15.109 -3.875 -1.949 0.362 N7 V2G 20 V2G C5 C9 C 0 1 Y N N 13.109 4.349 14.842 -4.763 -1.002 -0.027 C5 V2G 21 V2G C4 C10 C 0 1 Y N N 12.743 5.255 15.765 -4.027 0.156 -0.330 C4 V2G 22 V2G N3 N4 N 0 1 Y N N 13.312 6.475 15.876 -4.672 1.242 -0.740 N3 V2G 23 V2G C2 C11 C 0 1 Y N N 14.317 6.945 14.959 -5.983 1.238 -0.863 C2 V2G 24 V2G N1 N5 N 0 1 Y N N 14.591 5.916 13.943 -6.717 0.175 -0.591 N1 V2G 25 V2G C6 C12 C 0 1 Y N N 14.025 4.668 13.955 -6.160 -0.956 -0.170 C6 V2G 26 V2G N6 N6 N 0 1 N N N 14.346 3.706 13.091 -6.938 -2.066 0.112 N6 V2G 27 V2G H1 H1 H 0 1 N N N 12.561 3.952 20.980 4.943 -0.304 1.180 H1 V2G 28 V2G H2 H2 H 0 1 N N N 12.535 4.275 23.872 6.282 -0.732 -1.279 H2 V2G 29 V2G H3 H3 H 0 1 N N N 12.089 2.829 22.904 4.591 -0.228 -1.514 H3 V2G 30 V2G H4 H4 H 0 1 N N N 15.392 1.983 23.280 6.424 2.932 -1.181 H4 V2G 31 V2G H5 H5 H 0 1 N N N 11.071 6.947 22.962 4.124 -2.530 -1.852 H5 V2G 32 V2G H6 H6 H 0 1 N N N 8.286 4.875 20.886 1.422 -0.463 1.503 H6 V2G 33 V2G H7 H7 H 0 1 N N N 8.834 3.351 20.109 2.606 0.772 1.012 H7 V2G 34 V2G H8 H8 H 0 1 N N N 9.981 6.152 19.632 1.138 1.308 -0.969 H8 V2G 35 V2G H9 H9 H 0 1 N N N 8.329 4.256 17.894 0.646 1.886 1.848 H9 V2G 36 V2G H10 H10 H 0 1 N N N 7.148 5.833 19.173 0.010 3.955 0.837 H10 V2G 37 V2G H11 H11 H 0 1 N N N 9.507 5.197 16.130 -1.540 1.023 1.880 H11 V2G 38 V2G H12 H12 H 0 1 N N N 8.698 7.359 16.536 -2.027 3.355 1.698 H12 V2G 39 V2G H13 H13 H 0 1 N N N 11.652 6.294 17.916 -1.696 1.354 -1.172 H13 V2G 40 V2G H14 H14 H 0 1 N N N 10.892 2.738 16.493 -1.771 -2.000 0.572 H14 V2G 41 V2G H15 H15 H 0 1 N N N 14.799 7.910 15.009 -6.476 2.138 -1.199 H15 V2G 42 V2G H16 H16 H 0 1 N N N 15.044 4.044 12.460 -7.900 -2.023 0.004 H16 V2G 43 V2G H17 H17 H 0 1 N N N 14.702 2.916 13.590 -6.519 -2.886 0.419 H17 V2G 44 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V2G N6 C6 SING N N 1 V2G N1 C6 DOUB Y N 2 V2G N1 C2 SING Y N 3 V2G C6 C5 SING Y N 4 V2G C5 N7 SING Y N 5 V2G C5 C4 DOUB Y N 6 V2G C2 N3 DOUB Y N 7 V2G N7 C8 DOUB Y N 8 V2G C4 N3 SING Y N 9 V2G C4 N9 SING Y N 10 V2G C8 N9 SING Y N 11 V2G N9 "C1'" SING N N 12 V2G "O2'" "C2'" SING N N 13 V2G "C2'" "C1'" SING N N 14 V2G "C2'" "C3'" SING N N 15 V2G "C1'" "O4'" SING N N 16 V2G "C3'" "O3'" SING N N 17 V2G "C3'" "C4'" SING N N 18 V2G "O4'" "C4'" SING N N 19 V2G "C4'" "C5'" SING N N 20 V2G "C5'" "O5'" SING N N 21 V2G O2 P DOUB N N 22 V2G "O5'" P SING N N 23 V2G P N SING N N 24 V2G P O1 SING N N 25 V2G N CA SING N N 26 V2G OXT C DOUB N N 27 V2G C CA SING N N 28 V2G C O SING N N 29 V2G N H1 SING N N 30 V2G CA H2 SING N N 31 V2G CA H3 SING N N 32 V2G O H4 SING N N 33 V2G O1 H5 SING N N 34 V2G "C5'" H6 SING N N 35 V2G "C5'" H7 SING N N 36 V2G "C4'" H8 SING N N 37 V2G "C3'" H9 SING N N 38 V2G "O3'" H10 SING N N 39 V2G "C2'" H11 SING N N 40 V2G "O2'" H12 SING N N 41 V2G "C1'" H13 SING N N 42 V2G C8 H14 SING N N 43 V2G C2 H15 SING N N 44 V2G N6 H16 SING N N 45 V2G N6 H17 SING N N 46 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V2G SMILES ACDLabs 12.01 "N(CC(O)=O)P(O)(=O)OCC1OC(C(C1O)O)n2cnc3c2ncnc3N" V2G InChI InChI 1.03 "InChI=1S/C12H17N6O8P/c13-10-7-11(15-3-14-10)18(4-16-7)12-9(22)8(21)5(26-12)2-25-27(23,24)17-1-6(19)20/h3-5,8-9,12,21-22H,1-2H2,(H,19,20)(H2,13,14,15)(H2,17,23,24)/t5-,8-,9-,12-/m1/s1" V2G InChIKey InChI 1.03 OFENVOUOJQRLCP-JJNLEZRASA-N V2G SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)NCC(O)=O)[C@@H](O)[C@H]3O" V2G SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)NCC(O)=O)[CH](O)[CH]3O" V2G SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(NCC(=O)O)O)O)O)N" V2G SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(NCC(=O)O)O)O)O)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier V2G "SYSTEMATIC NAME" ACDLabs 12.01 "{[(S)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]amino}acetic acid (non-preferred name)" V2G "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]amino]ethanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V2G "Create component" 2020-06-19 RCSB V2G "Initial release" 2020-12-02 RCSB ##