data_V2K # _chem_comp.id V2K _chem_comp.name "4-(5-methoxy-2-methyl-benzimidazol-1-yl)benzaldehyde" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H14 N2 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 266.295 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V2K _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7O59 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V2K C10 C1 C 0 1 Y N N N N N -16.265 -23.721 -2.138 2.816 1.509 0.085 C10 V2K 1 V2K C11 C2 C 0 1 Y N N N N N -15.152 -23.453 -2.929 3.815 0.540 0.094 C11 V2K 2 V2K C13 C3 C 0 1 N N N N N N -15.432 -25.547 -3.966 5.391 2.318 0.197 C13 V2K 3 V2K C14 C4 C 0 1 Y N N N N N -14.313 -22.390 -2.614 3.488 -0.801 0.045 C14 V2K 4 V2K C15 C5 C 0 1 Y N N N N N -14.599 -21.578 -1.480 2.146 -1.185 -0.012 C15 V2K 5 V2K C17 C6 C 0 1 Y N N N N N -14.682 -20.110 0.141 0.232 -2.215 -0.106 C17 V2K 6 V2K C18 C7 C 0 1 N N N N N N -14.330 -18.933 1.045 -0.789 -3.322 -0.171 C18 V2K 7 V2K C02 C8 C 0 1 N N N N N N -19.727 -21.059 4.392 -5.200 1.415 -0.196 C02 V2K 8 V2K C03 C9 C 0 1 Y N N N N N -18.662 -21.020 3.299 -3.859 0.816 -0.166 C03 V2K 9 V2K C04 C10 C 0 1 Y N N N N N -18.675 -19.992 2.370 -3.465 0.031 0.925 C04 V2K 10 V2K C05 C11 C 0 1 Y N N N N N -17.721 -19.938 1.370 -2.213 -0.527 0.949 C05 V2K 11 V2K C06 C12 C 0 1 Y N N N N N -16.744 -20.916 1.307 -1.334 -0.314 -0.109 C06 V2K 12 V2K C08 C13 C 0 1 Y N N N N N -15.691 -21.845 -0.714 1.144 -0.201 -0.019 C08 V2K 13 V2K C09 C14 C 0 1 Y N N N N N -16.548 -22.930 -1.037 1.489 1.142 0.029 C09 V2K 14 V2K C19 C15 C 0 1 Y N N N N N -16.736 -21.949 2.227 -1.721 0.465 -1.195 C19 V2K 15 V2K C20 C16 C 0 1 Y N N N N N -17.688 -22.005 3.231 -2.973 1.022 -1.231 C20 V2K 16 V2K N07 N1 N 0 1 Y N N N N N -15.725 -20.928 0.275 -0.060 -0.883 -0.080 N07 V2K 17 V2K N16 N2 N 0 1 Y N N N N N -13.987 -20.494 -0.935 1.520 -2.390 -0.066 N16 V2K 18 V2K O12 O1 O 0 1 N N N N N N -14.887 -24.261 -4.038 5.121 0.915 0.149 O12 V2K 19 V2K H1 H1 H 0 1 N N N N N N -16.912 -24.550 -2.384 3.082 2.555 0.127 H1 V2K 20 V2K H2 H2 H 0 1 N N N N N N -15.173 -26.107 -4.877 6.468 2.479 0.239 H2 V2K 21 V2K H3 H3 H 0 1 N N N N N N -15.025 -26.069 -3.087 4.986 2.796 -0.695 H3 V2K 22 V2K H4 H4 H 0 1 N N N N N N -16.526 -25.477 -3.877 4.924 2.748 1.083 H4 V2K 23 V2K H5 H5 H 0 1 N N N N N N -13.448 -22.181 -3.227 4.267 -1.549 0.052 H5 V2K 24 V2K H6 H6 H 0 1 N N N N N N -13.415 -18.447 0.676 -0.999 -3.560 -1.214 H6 V2K 25 V2K H7 H7 H 0 1 N N N N N N -15.157 -18.208 1.041 -0.398 -4.206 0.332 H7 V2K 26 V2K H8 H8 H 0 1 N N N N N N -14.164 -19.295 2.070 -1.706 -2.999 0.320 H8 V2K 27 V2K H9 H9 H 0 1 N N N N N N -20.664 -20.536 4.269 -5.502 2.020 -1.038 H9 V2K 28 V2K H12 H12 H 0 1 N N N N N N -19.436 -19.227 2.427 -4.147 -0.135 1.746 H12 V2K 29 V2K H13 H13 H 0 1 N N N N N N -17.738 -19.139 0.644 -1.908 -1.132 1.790 H13 V2K 30 V2K H14 H14 H 0 1 N N N N N N -17.415 -23.137 -0.428 0.718 1.899 0.027 H14 V2K 31 V2K H15 H15 H 0 1 N N N N N N -15.981 -22.718 2.162 -1.035 0.628 -2.014 H15 V2K 32 V2K H16 H16 H 0 1 N N N N N N -17.672 -22.807 3.954 -3.273 1.627 -2.074 H16 V2K 33 V2K O1 O2 O 0 1 N Y N N N N -19.456 -21.804 5.582 -5.968 1.231 0.725 O1 V2K 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V2K O12 C13 SING N N 1 V2K O12 C11 SING N N 2 V2K C11 C14 DOUB Y N 3 V2K C11 C10 SING Y N 4 V2K C14 C15 SING Y N 5 V2K C10 C09 DOUB Y N 6 V2K C15 N16 SING Y N 7 V2K C15 C08 DOUB Y N 8 V2K C09 C08 SING Y N 9 V2K N16 C17 DOUB Y N 10 V2K C08 N07 SING Y N 11 V2K C17 N07 SING Y N 12 V2K C17 C18 SING N N 13 V2K N07 C06 SING N N 14 V2K C06 C05 DOUB Y N 15 V2K C06 C19 SING Y N 16 V2K C05 C04 SING Y N 17 V2K C19 C20 DOUB Y N 18 V2K C04 C03 DOUB Y N 19 V2K C20 C03 SING Y N 20 V2K C03 C02 SING N N 21 V2K C10 H1 SING N N 22 V2K C13 H2 SING N N 23 V2K C13 H3 SING N N 24 V2K C13 H4 SING N N 25 V2K C14 H5 SING N N 26 V2K C18 H6 SING N N 27 V2K C18 H7 SING N N 28 V2K C18 H8 SING N N 29 V2K C02 H9 SING N N 30 V2K C04 H12 SING N N 31 V2K C05 H13 SING N N 32 V2K C09 H14 SING N N 33 V2K C19 H15 SING N N 34 V2K C20 H16 SING N N 35 V2K C02 O1 DOUB N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V2K InChI InChI 1.03 "InChI=1S/C16H14N2O2/c1-11-17-15-9-14(20-2)7-8-16(15)18(11)13-5-3-12(10-19)4-6-13/h3-10H,1-2H3" V2K InChIKey InChI 1.03 GCZSSCUCVAUGKC-UHFFFAOYSA-N V2K SMILES_CANONICAL CACTVS 3.385 "COc1ccc2n(c(C)nc2c1)c3ccc(C=O)cc3" V2K SMILES CACTVS 3.385 "COc1ccc2n(c(C)nc2c1)c3ccc(C=O)cc3" V2K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1nc2cc(ccc2n1c3ccc(cc3)C=O)OC" V2K SMILES "OpenEye OEToolkits" 2.0.7 "Cc1nc2cc(ccc2n1c3ccc(cc3)C=O)OC" # _pdbx_chem_comp_identifier.comp_id V2K _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-(5-methoxy-2-methyl-benzimidazol-1-yl)benzaldehyde" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V2K "Create component" 2021-04-08 PDBE V2K "Initial release" 2021-06-09 RCSB V2K "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id V2K _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C02 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #