data_V2N # _chem_comp.id V2N _chem_comp.name "4-(6-methoxy-2-methyl-benzimidazol-1-yl)benzaldehyde" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H14 N2 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 266.295 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V2N _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7O59 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V2N C10 C1 C 0 1 Y N N N N N -13.473 -19.325 0.111 2.981 1.254 0.080 C10 V2N 1 V2N C12 C2 C 0 1 N N N N N N -13.781 -17.458 1.528 4.749 2.840 0.172 C12 V2N 2 V2N C13 C3 C 0 1 Y N N N N N -12.863 -19.779 -1.057 3.955 0.266 -0.029 C13 V2N 3 V2N C14 C4 C 0 1 Y N N N N N -13.455 -20.789 -1.808 3.603 -1.050 -0.130 C14 V2N 4 V2N C15 C5 C 0 1 Y N N N N N -14.686 -21.359 -1.380 2.254 -1.414 -0.125 C15 V2N 5 V2N C17 C6 C 0 1 Y N N N N N -16.548 -22.478 -1.079 0.322 -2.413 -0.158 C17 V2N 6 V2N C18 C7 C 0 1 N N N N N N -17.701 -23.460 -1.265 -0.718 -3.501 -0.221 C18 V2N 7 V2N C02 C8 C 0 1 N N N N N N -19.765 -20.932 4.492 -5.048 1.281 0.294 C02 V2N 8 V2N C03 C9 C 0 1 Y N N N N N -18.876 -21.109 3.266 -3.716 0.668 0.209 C03 V2N 9 V2N C04 C10 C 0 1 Y N N N N N -19.161 -20.391 2.116 -3.268 -0.182 1.227 C04 V2N 10 V2N C05 C11 C 0 1 Y N N N N N -18.363 -20.535 0.996 -2.026 -0.756 1.141 C05 V2N 11 V2N C06 C12 C 0 1 Y N N N N N -17.297 -21.414 1.039 -1.210 -0.494 0.044 C06 V2N 12 V2N C08 C13 C 0 1 Y N N N N N -15.276 -20.910 -0.241 1.268 -0.419 -0.015 C08 V2N 13 V2N C09 C14 C 0 1 Y N N N N N -14.677 -19.879 0.527 1.639 0.914 0.087 C09 V2N 14 V2N C19 C15 C 0 1 Y N N N N N -17.004 -22.126 2.185 -1.651 0.350 -0.970 C19 V2N 15 V2N C20 C16 C 0 1 Y N N N N N -17.797 -21.982 3.307 -2.892 0.929 -0.893 C20 V2N 16 V2N N07 N1 N 0 1 Y N N N N N -16.419 -21.603 -0.085 0.054 -1.080 -0.038 N07 V2N 17 V2N N16 N2 N 0 1 Y N N N N N -15.493 -22.332 -1.887 1.607 -2.606 -0.208 N16 V2N 18 V2N O11 O1 O 0 1 N N N N N N -12.886 -18.311 0.868 3.349 2.558 0.185 O11 V2N 19 V2N H1 H1 H 0 1 N N N N N N -13.218 -16.700 2.092 4.905 3.915 0.263 H1 V2N 20 V2N H2 H2 H 0 1 N N N N N N -14.426 -16.961 0.789 5.231 2.332 1.007 H2 V2N 21 V2N H3 H3 H 0 1 N N N N N N -14.402 -18.044 2.221 5.182 2.489 -0.765 H3 V2N 22 V2N H4 H4 H 0 1 N N N N N N -11.928 -19.345 -1.380 4.999 0.543 -0.033 H4 V2N 23 V2N H5 H5 H 0 1 N N N N N N -12.982 -21.139 -2.713 4.367 -1.809 -0.214 H5 V2N 24 V2N H6 H6 H 0 1 N N N N N N -17.539 -24.047 -2.181 -0.997 -3.678 -1.260 H6 V2N 25 V2N H7 H7 H 0 1 N N N N N N -17.749 -24.137 -0.399 -0.312 -4.418 0.206 H7 V2N 26 V2N H8 H8 H 0 1 N N N N N N -18.646 -22.904 -1.348 -1.599 -3.196 0.344 H8 V2N 27 V2N H9 H9 H 0 1 N N N N N N -20.564 -20.206 4.534 -5.682 1.079 1.144 H9 V2N 28 V2N H12 H12 H 0 1 N N N N N N -20.006 -19.719 2.094 -3.900 -0.386 2.079 H12 V2N 29 V2N H13 H13 H 0 1 N N N N N N -18.570 -19.969 0.100 -1.679 -1.412 1.926 H13 V2N 30 V2N H14 H14 H 0 1 N N N N N N -15.154 -19.527 1.430 0.885 1.682 0.176 H14 V2N 31 V2N H15 H15 H 0 1 N N N N N N -16.156 -22.795 2.204 -1.015 0.551 -1.819 H15 V2N 32 V2N H16 H16 H 0 1 N N N N N N -17.580 -22.542 4.205 -3.235 1.580 -1.683 H16 V2N 33 V2N O1 O2 O 0 1 N Y N N N N -19.456 -21.804 5.582 -5.436 2.013 -0.592 O1 V2N 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V2N N16 C15 SING Y N 1 V2N N16 C17 DOUB Y N 2 V2N C14 C15 DOUB Y N 3 V2N C14 C13 SING Y N 4 V2N C15 C08 SING Y N 5 V2N C18 C17 SING N N 6 V2N C17 N07 SING Y N 7 V2N C13 C10 DOUB Y N 8 V2N C08 N07 SING Y N 9 V2N C08 C09 DOUB Y N 10 V2N N07 C06 SING N N 11 V2N C10 C09 SING Y N 12 V2N C10 O11 SING N N 13 V2N O11 C12 SING N N 14 V2N C05 C06 DOUB Y N 15 V2N C05 C04 SING Y N 16 V2N C06 C19 SING Y N 17 V2N C04 C03 DOUB Y N 18 V2N C19 C20 DOUB Y N 19 V2N C03 C20 SING Y N 20 V2N C03 C02 SING N N 21 V2N C12 H1 SING N N 22 V2N C12 H2 SING N N 23 V2N C12 H3 SING N N 24 V2N C13 H4 SING N N 25 V2N C14 H5 SING N N 26 V2N C18 H6 SING N N 27 V2N C18 H7 SING N N 28 V2N C18 H8 SING N N 29 V2N C02 H9 SING N N 30 V2N C04 H12 SING N N 31 V2N C05 H13 SING N N 32 V2N C09 H14 SING N N 33 V2N C19 H15 SING N N 34 V2N C20 H16 SING N N 35 V2N C02 O1 DOUB N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V2N InChI InChI 1.03 "InChI=1S/C16H14N2O2/c1-11-17-15-8-7-14(20-2)9-16(15)18(11)13-5-3-12(10-19)4-6-13/h3-10H,1-2H3" V2N InChIKey InChI 1.03 FDRJTWROIPLYIS-UHFFFAOYSA-N V2N SMILES_CANONICAL CACTVS 3.385 "COc1ccc2nc(C)n(c3ccc(C=O)cc3)c2c1" V2N SMILES CACTVS 3.385 "COc1ccc2nc(C)n(c3ccc(C=O)cc3)c2c1" V2N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1nc2ccc(cc2n1c3ccc(cc3)C=O)OC" V2N SMILES "OpenEye OEToolkits" 2.0.7 "Cc1nc2ccc(cc2n1c3ccc(cc3)C=O)OC" # _pdbx_chem_comp_identifier.comp_id V2N _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-(6-methoxy-2-methyl-benzimidazol-1-yl)benzaldehyde" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V2N "Create component" 2021-04-08 PDBE V2N "Initial release" 2021-06-09 RCSB V2N "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id V2N _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C02 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #