data_V2W # _chem_comp.id V2W _chem_comp.name "4-methanoyl-~{N}-[(4-methoxyphenyl)methyl]benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H15 N O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 269.295 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V2W _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7O5D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V2W C01 C1 C 0 1 N N N N N N -31.400 -15.083 -2.393 6.451 -1.870 -0.834 C01 V2W 1 V2W C03 C2 C 0 1 Y N N N N N -29.965 -16.920 -1.946 4.765 -0.613 0.275 C03 V2W 2 V2W C04 C3 C 0 1 Y N N N N N -29.613 -18.256 -2.102 4.229 -0.337 -0.974 C04 V2W 3 V2W C05 C4 C 0 1 Y N N N N N -28.604 -18.812 -1.321 3.093 0.442 -1.080 C05 V2W 4 V2W C06 C5 C 0 1 Y N N N N N -27.941 -18.025 -0.390 2.490 0.946 0.058 C06 V2W 5 V2W C07 C6 C 0 1 Y N N N N N -28.288 -16.694 -0.237 3.023 0.671 1.304 C07 V2W 6 V2W C08 C7 C 0 1 Y N N N N N -29.294 -16.138 -1.013 4.159 -0.107 1.415 C08 V2W 7 V2W C09 C8 C 0 1 N N N N N N -26.834 -18.614 0.476 1.251 1.795 -0.060 C09 V2W 8 V2W C11 C9 C 0 1 N N N N N N -25.505 -20.532 -0.501 -1.165 1.483 -0.101 C11 V2W 9 V2W C12 C10 C 0 1 Y N N N N N -24.361 -20.957 -1.407 -2.364 0.616 -0.054 C12 V2W 10 V2W C13 C11 C 0 1 Y N N N N N -24.495 -22.108 -2.171 -3.637 1.181 -0.146 C13 V2W 11 V2W C14 C12 C 0 1 Y N N N N N -23.454 -22.481 -3.006 -4.754 0.376 -0.101 C14 V2W 12 V2W C15 C13 C 0 1 Y N N N N N -22.298 -21.720 -3.082 -4.612 -1.008 0.036 C15 V2W 13 V2W C16 C14 C 0 1 Y N N N N N -22.166 -20.578 -2.309 -3.336 -1.573 0.127 C16 V2W 14 V2W C17 C15 C 0 1 Y N N N N N -23.206 -20.183 -1.479 -2.221 -0.766 0.078 C17 V2W 15 V2W C18 C16 C 0 1 N N N N N N -21.144 -22.157 -3.998 -5.806 -1.871 0.084 C18 V2W 16 V2W N10 N1 N 0 1 N N N N N N -25.762 -19.106 -0.361 0.064 0.938 -0.013 N10 V2W 17 V2W O02 O1 O 0 1 N N N N N N -30.991 -16.375 -2.730 5.880 -1.384 0.382 O02 V2W 18 V2W O19 O2 O 0 1 N N N N N N -26.158 -21.359 0.046 -1.289 2.686 -0.221 O19 V2W 19 V2W H1 H1 H 0 1 N N N N N N -32.204 -14.763 -3.072 5.720 -2.485 -1.359 H1 V2W 20 V2W H2 H2 H 0 1 N N N N N N -31.770 -15.074 -1.357 6.736 -1.028 -1.464 H2 V2W 21 V2W H3 H3 H 0 1 N N N N N N -30.548 -14.393 -2.484 7.333 -2.470 -0.607 H3 V2W 22 V2W H4 H4 H 0 1 N N N N N N -30.125 -18.865 -2.832 4.700 -0.729 -1.863 H4 V2W 23 V2W H5 H5 H 0 1 N N N N N N -28.338 -19.852 -1.439 2.675 0.657 -2.052 H5 V2W 24 V2W H6 H6 H 0 1 N N N N N N -27.772 -16.085 0.491 2.550 1.066 2.192 H6 V2W 25 V2W H7 H7 H 0 1 N N N N N N -29.556 -15.097 -0.892 4.574 -0.322 2.389 H7 V2W 26 V2W H8 H8 H 0 1 N N N N N N -26.444 -17.836 1.148 1.219 2.507 0.765 H8 V2W 27 V2W H9 H9 H 0 1 N N N N N N -27.241 -19.444 1.073 1.271 2.337 -1.006 H9 V2W 28 V2W H10 H10 H 0 1 N N N N N N -25.395 -22.703 -2.116 -3.747 2.251 -0.251 H10 V2W 29 V2W H11 H11 H 0 1 N N N N N N -23.544 -23.375 -3.605 -5.739 0.814 -0.171 H11 V2W 30 V2W H12 H12 H 0 1 N N N N N N -21.257 -19.997 -2.352 -3.226 -2.642 0.233 H12 V2W 31 V2W H13 H13 H 0 1 N N N N N N -23.120 -19.280 -0.892 -1.236 -1.202 0.148 H13 V2W 32 V2W H14 H14 H 0 1 N N N N N N -20.504 -23.012 -3.837 -5.696 -2.940 0.189 H14 V2W 33 V2W H17 H17 H 0 1 N N N N N N -25.186 -18.454 -0.853 0.163 -0.023 0.082 H17 V2W 34 V2W O1 O3 O 0 1 N Y N N N N -21.055 -21.249 -5.097 -6.912 -1.380 0.005 O1 V2W 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V2W C18 C15 SING N N 1 V2W C15 C14 DOUB Y N 2 V2W C15 C16 SING Y N 3 V2W C14 C13 SING Y N 4 V2W O02 C01 SING N N 5 V2W O02 C03 SING N N 6 V2W C16 C17 DOUB Y N 7 V2W C13 C12 DOUB Y N 8 V2W C04 C03 DOUB Y N 9 V2W C04 C05 SING Y N 10 V2W C03 C08 SING Y N 11 V2W C17 C12 SING Y N 12 V2W C12 C11 SING N N 13 V2W C05 C06 DOUB Y N 14 V2W C08 C07 DOUB Y N 15 V2W C11 N10 SING N N 16 V2W C11 O19 DOUB N N 17 V2W C06 C07 SING Y N 18 V2W C06 C09 SING N N 19 V2W N10 C09 SING N N 20 V2W C01 H1 SING N N 21 V2W C01 H2 SING N N 22 V2W C01 H3 SING N N 23 V2W C04 H4 SING N N 24 V2W C05 H5 SING N N 25 V2W C07 H6 SING N N 26 V2W C08 H7 SING N N 27 V2W C09 H8 SING N N 28 V2W C09 H9 SING N N 29 V2W C13 H10 SING N N 30 V2W C14 H11 SING N N 31 V2W C16 H12 SING N N 32 V2W C17 H13 SING N N 33 V2W C18 H14 SING N N 34 V2W N10 H17 SING N N 35 V2W C18 O1 DOUB N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V2W InChI InChI 1.03 "InChI=1S/C16H15NO3/c1-20-15-8-4-12(5-9-15)10-17-16(19)14-6-2-13(11-18)3-7-14/h2-9,11H,10H2,1H3,(H,17,19)" V2W InChIKey InChI 1.03 SCOZUTCGYBXUCE-UHFFFAOYSA-N V2W SMILES_CANONICAL CACTVS 3.385 "COc1ccc(CNC(=O)c2ccc(C=O)cc2)cc1" V2W SMILES CACTVS 3.385 "COc1ccc(CNC(=O)c2ccc(C=O)cc2)cc1" V2W SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1ccc(cc1)CNC(=O)c2ccc(cc2)C=O" V2W SMILES "OpenEye OEToolkits" 2.0.7 "COc1ccc(cc1)CNC(=O)c2ccc(cc2)C=O" # _pdbx_chem_comp_identifier.comp_id V2W _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-methanoyl-~{N}-[(4-methoxyphenyl)methyl]benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V2W "Create component" 2021-04-08 PDBE V2W "Initial release" 2021-06-09 RCSB V2W "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id V2W _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C18 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #