data_V3H # _chem_comp.id V3H _chem_comp.name "(2R,4S)-2-[(1R)-2-butoxy-1-[(5-methyl-3-phenyl-1,2-oxazol-4-yl)carbonylamino]-2-oxidanylidene-ethyl]-5,5-dimethyl-1,3-thiazolidin-3-ium-4-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H30 N3 O6 S" _chem_comp.mon_nstd_parent_comp_id 0WO _chem_comp.pdbx_synonyms "Hydrolyzed Oxacillin" _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2021-04-09 _chem_comp.pdbx_modified_date 2022-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 476.566 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V3H _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7O5Q _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V3H C1 C1 C 0 1 N N N 0.354 -35.760 28.607 3.986 6.940 -0.192 C1 V3H 1 V3H C2 C2 C 0 1 N N N 1.797 -35.293 28.792 3.134 5.975 -1.018 C2 V3H 2 V3H C3 C3 C 0 1 N N N 1.856 -34.246 29.859 2.797 4.743 -0.176 C3 V3H 3 V3H C4 C4 C 0 1 N N N 3.149 -33.783 30.427 1.946 3.777 -1.003 C4 V3H 4 V3H C C5 C 0 1 N N N 3.739 -31.984 31.955 0.879 1.657 -0.786 C V3H 5 V3H SAR S1 S 0 1 N N N 5.228 -34.178 35.107 3.210 -0.025 0.495 SAR V3H 6 V3H CAW C6 C 0 1 Y N N 9.671 -33.056 34.603 -4.530 0.507 0.357 CAW V3H 7 V3H CA C7 C 0 1 N N R 4.648 -32.868 32.787 0.508 0.415 -0.018 CA V3H 8 V3H CAU C8 C 0 1 N N N 7.081 -32.735 32.598 -1.539 -0.879 0.255 CAU V3H 9 V3H CAY C9 C 0 1 Y N N 8.244 -31.874 32.721 -2.808 -1.416 -0.264 CAY V3H 10 V3H CAX C10 C 0 1 Y N N 9.346 -32.005 33.622 -4.153 -0.804 -0.225 CAX V3H 11 V3H N N1 N 0 1 N N N 5.926 -32.206 33.004 -0.755 -0.120 -0.535 N V3H 12 V3H O O1 O 0 1 N N N 2.792 -32.709 31.332 1.626 2.608 -0.203 O V3H 13 V3H OXT O2 O 0 1 N N N 3.816 -30.774 31.908 0.504 1.798 -1.926 OXT V3H 14 V3H OAF O3 O 0 1 N N N 7.170 -33.876 32.145 -1.199 -1.120 1.398 OAF V3H 15 V3H CAL C11 C 0 1 Y N N 8.723 -33.499 35.516 -5.527 1.276 -0.241 CAL V3H 16 V3H CAJ C12 C 0 1 Y N N 9.022 -34.507 36.417 -5.874 2.495 0.305 CAJ V3H 17 V3H CAI C13 C 0 1 Y N N 10.263 -35.099 36.405 -5.235 2.954 1.443 CAI V3H 18 V3H CAK C14 C 0 1 Y N N 11.208 -34.678 35.499 -4.246 2.194 2.040 CAK V3H 19 V3H CAM C15 C 0 1 Y N N 10.917 -33.665 34.601 -3.894 0.971 1.507 CAM V3H 20 V3H NAN N2 N 0 1 Y N N 10.183 -31.012 33.470 -4.938 -1.670 -0.813 NAN V3H 21 V3H OAQ O4 O 0 1 Y N N 9.628 -30.192 32.458 -4.339 -2.649 -1.184 OAQ V3H 22 V3H CAV C16 C 0 1 Y N N 8.475 -30.732 32.027 -3.033 -2.606 -0.910 CAV V3H 23 V3H CAA C17 C 0 1 N N N 7.741 -29.981 30.973 -2.009 -3.662 -1.236 CAA V3H 24 V3H CB C18 C 0 1 N N R 3.988 -33.281 34.117 1.610 -0.634 -0.181 CB V3H 25 V3H NAP N3 N 1 1 N N N 3.570 -32.149 34.976 1.364 -1.812 0.697 NAP V3H 26 V3H CBB C19 C 0 1 N N S 3.706 -32.382 36.434 2.596 -2.579 0.901 CBB V3H 27 V3H CAT C20 C 0 1 N N N 2.384 -32.067 37.170 2.715 -3.609 -0.192 CAT V3H 28 V3H OAH O5 O 0 1 N N N 2.486 -31.719 38.347 3.531 -4.663 -0.036 OAH V3H 29 V3H OAE O6 O 0 1 N N N 1.307 -32.201 36.542 2.075 -3.487 -1.210 OAE V3H 30 V3H CBC C21 C 0 1 N N N 4.185 -33.868 36.598 3.859 -1.697 0.892 CBC V3H 31 V3H CAB C22 C 0 1 N N N 5.097 -34.061 37.791 4.530 -1.703 2.267 CAB V3H 32 V3H CAC C23 C 0 1 N N N 3.063 -34.898 36.647 4.836 -2.166 -0.188 CAC V3H 33 V3H H1 H1 H 0 1 N N N 0.315 -36.529 27.822 3.431 7.247 0.695 H1 V3H 34 V3H H2 H2 H 0 1 N N N -0.019 -36.181 29.552 4.908 6.444 0.110 H2 V3H 35 V3H H3 H3 H 0 1 N N N -0.273 -34.905 28.314 4.225 7.819 -0.792 H3 V3H 36 V3H H4 H4 H 0 1 N N N 2.423 -36.149 29.084 2.212 6.471 -1.320 H4 V3H 37 V3H H5 H5 H 0 1 N N N 2.169 -34.872 27.846 3.689 5.669 -1.905 H5 V3H 38 V3H H6 H6 H 0 1 N N N 1.363 -33.354 29.445 3.720 4.246 0.126 H6 V3H 39 V3H H7 H7 H 0 1 N N N 1.267 -34.632 30.704 2.243 5.049 0.711 H7 V3H 40 V3H H8 H8 H 0 1 N N N 3.648 -34.599 30.971 1.023 4.274 -1.305 H8 V3H 41 V3H H9 H9 H 0 1 N N N 3.812 -33.414 29.631 2.500 3.471 -1.889 H9 V3H 42 V3H HA H10 H 0 1 N N N 4.830 -33.789 32.214 0.393 0.661 1.038 HA V3H 43 V3H HN H11 H 0 1 N N N 5.938 -31.323 33.474 -1.026 0.073 -1.446 HN V3H 44 V3H HAL H12 H 0 1 N N N 7.740 -33.052 35.523 -6.025 0.920 -1.130 HAL V3H 45 V3H HAJ H13 H 0 1 N N N 8.279 -34.829 37.131 -6.646 3.093 -0.158 HAJ V3H 46 V3H HAI H14 H 0 1 N N N 10.494 -35.890 37.103 -5.510 3.909 1.866 HAI V3H 47 V3H HAK H15 H 0 1 N N N 12.184 -35.141 35.488 -3.750 2.557 2.929 HAK V3H 48 V3H HAM H16 H 0 1 N N N 11.667 -33.346 33.893 -3.121 0.379 1.974 HAM V3H 49 V3H HAAB H17 H 0 0 N N N 8.298 -29.068 30.717 -2.494 -4.495 -1.744 HAAB V3H 50 V3H HAA H18 H 0 1 N N N 7.639 -30.611 30.077 -1.243 -3.237 -1.885 HAA V3H 51 V3H HAAA H19 H 0 0 N N N 6.742 -29.709 31.345 -1.547 -4.017 -0.315 HAAA V3H 52 V3H HB H20 H 0 1 N N N 3.154 -33.974 33.934 1.713 -0.934 -1.224 HB V3H 53 V3H HNAQ H21 H 0 0 N Y N 4.129 -31.355 34.736 1.019 -1.495 1.590 HNAQ V3H 54 V3H HNAP H22 H 0 0 N N N 2.609 -31.951 34.782 0.671 -2.407 0.267 HNAP V3H 55 V3H HBB H23 H 0 1 N N N 4.491 -31.724 36.834 2.534 -3.095 1.860 HBB V3H 56 V3H HOAH H24 H 0 0 N N N 1.621 -31.567 38.709 3.574 -5.297 -0.765 HOAH V3H 57 V3H HABA H25 H 0 0 N N N 4.530 -33.889 38.718 3.810 -1.391 3.024 HABA V3H 58 V3H HABB H26 H 0 0 N N N 5.492 -35.088 37.788 4.885 -2.708 2.494 HABB V3H 59 V3H HAB H27 H 0 1 N N N 5.932 -33.347 37.734 5.374 -1.012 2.262 HAB V3H 60 V3H HAC H28 H 0 1 N N N 2.438 -34.718 37.534 5.684 -1.483 -0.232 HAC V3H 61 V3H HACA H29 H 0 0 N N N 2.446 -34.812 35.740 5.189 -3.169 0.052 HACA V3H 62 V3H HACB H30 H 0 0 N N N 3.495 -35.908 36.702 4.331 -2.180 -1.154 HACB V3H 63 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V3H C1 C2 SING N N 1 V3H C2 C3 SING N N 2 V3H C3 C4 SING N N 3 V3H C4 O SING N N 4 V3H CAA CAV SING N N 5 V3H O C SING N N 6 V3H OXT C DOUB N N 7 V3H C CA SING N N 8 V3H CAV OAQ SING Y N 9 V3H CAV CAY DOUB Y N 10 V3H OAF CAU DOUB N N 11 V3H OAQ NAN SING Y N 12 V3H CAU CAY SING N N 13 V3H CAU N SING N N 14 V3H CAY CAX SING Y N 15 V3H CA N SING N N 16 V3H CA CB SING N N 17 V3H NAN CAX DOUB Y N 18 V3H CAX CAW SING N N 19 V3H CB NAP SING N N 20 V3H CB SAR SING N N 21 V3H CAM CAW DOUB Y N 22 V3H CAM CAK SING Y N 23 V3H CAW CAL SING Y N 24 V3H NAP CBB SING N N 25 V3H SAR CBC SING N N 26 V3H CAK CAI DOUB Y N 27 V3H CAL CAJ DOUB Y N 28 V3H CAI CAJ SING Y N 29 V3H CBB CBC SING N N 30 V3H CBB CAT SING N N 31 V3H OAE CAT DOUB N N 32 V3H CBC CAC SING N N 33 V3H CBC CAB SING N N 34 V3H CAT OAH SING N N 35 V3H C1 H1 SING N N 36 V3H C1 H2 SING N N 37 V3H C1 H3 SING N N 38 V3H C2 H4 SING N N 39 V3H C2 H5 SING N N 40 V3H C3 H6 SING N N 41 V3H C3 H7 SING N N 42 V3H C4 H8 SING N N 43 V3H C4 H9 SING N N 44 V3H CA HA SING N N 45 V3H N HN SING N N 46 V3H CAL HAL SING N N 47 V3H CAJ HAJ SING N N 48 V3H CAI HAI SING N N 49 V3H CAK HAK SING N N 50 V3H CAM HAM SING N N 51 V3H CAA HAAB SING N N 52 V3H CAA HAA SING N N 53 V3H CAA HAAA SING N N 54 V3H CB HB SING N N 55 V3H NAP HNAQ SING N N 56 V3H NAP HNAP SING N N 57 V3H CBB HBB SING N N 58 V3H OAH HOAH SING N N 59 V3H CAB HABA SING N N 60 V3H CAB HABB SING N N 61 V3H CAB HAB SING N N 62 V3H CAC HAC SING N N 63 V3H CAC HACA SING N N 64 V3H CAC HACB SING N N 65 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V3H InChI InChI 1.03 "InChI=1S/C23H29N3O6S/c1-5-6-12-31-22(30)17(20-25-18(21(28)29)23(3,4)33-20)24-19(27)15-13(2)32-26-16(15)14-10-8-7-9-11-14/h7-11,17-18,20,25H,5-6,12H2,1-4H3,(H,24,27)(H,28,29)/p+1/t17-,18-,20+/m0/s1" V3H InChIKey InChI 1.03 KTVAJMKGNMTGBA-CMKODMSKSA-O V3H SMILES_CANONICAL CACTVS 3.385 "CCCCOC(=O)[C@@H](NC(=O)c1c(C)onc1c2ccccc2)[C@@H]3[NH2+][C@@H](C(O)=O)C(C)(C)S3" V3H SMILES CACTVS 3.385 "CCCCOC(=O)[CH](NC(=O)c1c(C)onc1c2ccccc2)[CH]3[NH2+][CH](C(O)=O)C(C)(C)S3" V3H SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCOC(=O)[C@H]([C@@H]1[NH2+][C@H](C(S1)(C)C)C(=O)O)NC(=O)c2c(onc2c3ccccc3)C" V3H SMILES "OpenEye OEToolkits" 2.0.7 "CCCCOC(=O)C(C1[NH2+]C(C(S1)(C)C)C(=O)O)NC(=O)c2c(onc2c3ccccc3)C" # _pdbx_chem_comp_identifier.comp_id V3H _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},4~{S})-2-[(1~{R})-2-butoxy-1-[(5-methyl-3-phenyl-1,2-oxazol-4-yl)carbonylamino]-2-oxidanylidene-ethyl]-5,5-dimethyl-1,3-thiazolidin-3-ium-4-carboxylic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V3H "Create component" 2021-04-09 PDBE V3H "Modify charge" 2021-04-09 PDBE V3H "Initial release" 2022-04-20 RCSB ##