data_V3P # _chem_comp.id V3P _chem_comp.name "4-iodophenyl 1,4-dithio-beta-D-glucopyranoside" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C12 H15 I O4 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-06-21 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 414.280 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V3P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1F9O _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V3P C4 C4 C 0 1 N N S 61.976 78.940 58.002 4.538 0.796 -0.193 C4 V3P 1 V3P C1 C1 C 0 1 N N S 63.708 80.074 55.936 2.305 -1.010 0.082 C1 V3P 2 V3P C2 C2 C 0 1 N N R 62.438 79.298 55.514 3.736 -1.552 0.063 C2 V3P 3 V3P O2 O2 O 0 1 N N N 61.866 79.932 54.376 3.811 -2.732 0.865 O2 V3P 4 V3P C3 C3 C 0 1 N N R 61.372 79.226 56.617 4.684 -0.489 0.627 C3 V3P 5 V3P O3 O3 O 0 1 N N N 60.428 78.213 56.293 6.031 -0.958 0.545 O3 V3P 6 V3P C5 C5 C 0 1 N N R 63.095 79.972 58.220 3.075 1.247 -0.164 C5 V3P 7 V3P O5 O5 O 0 1 N N N 64.125 79.735 57.263 2.245 0.201 -0.673 O5 V3P 8 V3P S1 S1 S 0 1 N N N 65.402 80.310 55.146 1.184 -2.235 -0.650 S1 V3P 9 V3P C6 C6 C 0 1 N N N 63.752 79.989 59.589 2.910 2.497 -1.031 C6 V3P 10 V3P O6 O6 O 0 1 N N N 64.741 81.008 59.664 1.572 2.986 -0.911 O6 V3P 11 V3P S4 S4 S 0 1 N N N 60.681 78.997 59.335 5.587 2.093 0.520 S4 V3P 12 V3P C11 C11 C 0 1 Y N N 63.377 83.443 53.663 -2.788 -1.604 -0.659 C11 V3P 13 V3P C21 C21 C 0 1 Y N N 63.738 82.367 54.369 -1.545 -2.173 -0.850 C21 V3P 14 V3P C31 C31 C 0 1 Y N N 65.004 81.807 54.225 -0.405 -1.512 -0.409 C31 V3P 15 V3P C41 C41 C 0 1 Y N N 65.910 82.392 53.337 -0.521 -0.279 0.222 C41 V3P 16 V3P C51 C51 C 0 1 Y N N 65.547 83.494 52.616 -1.767 0.284 0.409 C51 V3P 17 V3P C61 C61 C 0 1 Y N N 64.273 83.998 52.793 -2.900 -0.374 -0.035 C61 V3P 18 V3P I6 I6 I 0 1 N N N 63.648 85.562 51.727 -4.789 0.485 0.251 I6 V3P 19 V3P H4 H4 H 0 1 N N N 62.396 77.924 58.023 4.841 0.608 -1.223 H4 V3P 20 V3P H1 H1 H 0 1 N N N 63.362 81.115 56.010 2.004 -0.812 1.111 H1 V3P 21 V3P H2 H2 H 0 1 N N N 62.736 78.271 55.256 4.023 -1.789 -0.962 H2 V3P 22 V3P HO2 HO2 H 0 1 N Y N 61.085 79.461 54.110 3.231 -3.447 0.568 HO2 V3P 23 V3P H3 H3 H 0 1 N N N 60.864 80.200 56.663 4.429 -0.289 1.668 H3 V3P 24 V3P HO3 HO3 H 0 1 N Y N 59.767 78.166 56.974 6.194 -1.775 1.037 HO3 V3P 25 V3P H5 H5 H 0 1 N N N 62.665 80.969 58.042 2.785 1.475 0.862 H5 V3P 26 V3P H61 H61 H 0 1 N N N 62.984 80.175 60.355 3.608 3.265 -0.698 H61 V3P 27 V3P H62 H62 H 0 1 N N N 64.225 79.013 59.774 3.114 2.247 -2.072 H62 V3P 28 V3P HO6 HO6 H 0 1 N Y N 65.139 81.001 60.527 1.395 3.779 -1.435 HO6 V3P 29 V3P HS4 HS4 H 0 1 N Y N 61.378 78.736 60.401 6.821 1.567 0.430 HS4 V3P 30 V3P H12 H12 H 0 1 N N N 62.391 83.868 53.778 -3.675 -2.117 -1.002 H12 V3P 31 V3P H13 H13 H 0 1 N N N 63.037 81.925 55.062 -1.458 -3.131 -1.340 H13 V3P 32 V3P H14 H14 H 0 1 N N N 66.898 81.973 53.220 0.363 0.237 0.566 H14 V3P 33 V3P H15 H15 H 0 1 N N N 66.237 83.958 51.927 -1.858 1.244 0.897 H15 V3P 34 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V3P I6 C61 SING N N 1 V3P C51 C61 DOUB Y N 2 V3P C51 C41 SING Y N 3 V3P C61 C11 SING Y N 4 V3P C41 C31 DOUB Y N 5 V3P C11 C21 DOUB Y N 6 V3P C31 C21 SING Y N 7 V3P C31 S1 SING N N 8 V3P O2 C2 SING N N 9 V3P S1 C1 SING N N 10 V3P C2 C1 SING N N 11 V3P C2 C3 SING N N 12 V3P C1 O5 SING N N 13 V3P O3 C3 SING N N 14 V3P C3 C4 SING N N 15 V3P O5 C5 SING N N 16 V3P C4 C5 SING N N 17 V3P C4 S4 SING N N 18 V3P C5 C6 SING N N 19 V3P C6 O6 SING N N 20 V3P C4 H4 SING N N 21 V3P C1 H1 SING N N 22 V3P C2 H2 SING N N 23 V3P O2 HO2 SING N N 24 V3P C3 H3 SING N N 25 V3P O3 HO3 SING N N 26 V3P C5 H5 SING N N 27 V3P C6 H61 SING N N 28 V3P C6 H62 SING N N 29 V3P O6 HO6 SING N N 30 V3P S4 HS4 SING N N 31 V3P C11 H12 SING N N 32 V3P C21 H13 SING N N 33 V3P C41 H14 SING N N 34 V3P C51 H15 SING N N 35 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V3P SMILES ACDLabs 12.01 "C1(C(CO)OC(C(C1O)O)Sc2ccc(cc2)I)S" V3P InChI InChI 1.03 "InChI=1S/C12H15IO4S2/c13-6-1-3-7(4-2-6)19-12-10(16)9(15)11(18)8(5-14)17-12/h1-4,8-12,14-16,18H,5H2/t8-,9-,10-,11-,12+/m1/s1" V3P InChIKey InChI 1.03 VVMIJZYWEDEWJA-OOCWMUITSA-N V3P SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@@H](Sc2ccc(I)cc2)[C@H](O)[C@@H](O)[C@@H]1S" V3P SMILES CACTVS 3.385 "OC[CH]1O[CH](Sc2ccc(I)cc2)[CH](O)[CH](O)[CH]1S" V3P SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1S[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)S)O)O)I" V3P SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1SC2C(C(C(C(O2)CO)S)O)O)I" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier V3P "SYSTEMATIC NAME" ACDLabs 12.01 "4-iodophenyl 1,4-dithio-beta-D-glucopyranoside" V3P "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-2-(4-iodophenyl)sulfanyl-5-sulfanyl-oxane-3,4-diol" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support V3P "CARBOHYDRATE ISOMER" D PDB ? V3P "CARBOHYDRATE RING" pyranose PDB ? V3P "CARBOHYDRATE ANOMER" beta PDB ? V3P "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V3P "Create component" 2020-06-21 RCSB V3P "Initial release" 2020-07-01 RCSB ##