data_V40 # _chem_comp.id V40 _chem_comp.name "(2S)-1-{[(1R,2R)-2-(aminomethyl)cyclohexyl]methyl}pyrrolidin-2-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H24 N2 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-08-29 _chem_comp.pdbx_modified_date 2022-10-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 212.332 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V40 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5SU8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V40 N1 N1 N 0 1 N N N 25.439 15.911 36.389 1.659 -0.441 -0.192 N1 V40 1 V40 C7 C1 C 0 1 N N N 25.466 15.935 37.843 0.463 0.357 -0.491 C7 V40 2 V40 C8 C2 C 0 1 N N N 24.943 17.138 35.846 1.958 -0.426 1.263 C8 V40 3 V40 C9 C3 C 0 1 N N N 23.477 16.824 35.521 3.454 -0.828 1.321 C9 V40 4 V40 C1 C4 C 0 1 N N R 27.788 16.468 38.771 -2.005 0.535 -0.143 C1 V40 5 V40 C5 C5 C 0 1 N N N 26.391 14.600 39.658 -0.976 -1.676 -0.685 C5 V40 6 V40 C6 C6 C 0 1 N N R 26.756 15.383 38.416 -0.776 -0.354 0.058 C6 V40 7 V40 C4 C7 C 0 1 N N N 26.881 15.176 40.993 -2.214 -2.387 -0.136 C4 V40 8 V40 C3 C8 C 0 1 N N N 26.951 16.701 41.095 -3.444 -1.499 -0.337 C3 V40 9 V40 C2 C9 C 0 1 N N N 27.164 17.408 39.768 -3.243 -0.176 0.406 C2 V40 10 V40 O O1 O 0 1 N N N 24.056 14.002 36.729 2.677 1.527 -1.062 O V40 11 V40 C11 C10 C 0 1 N N S 24.620 14.786 35.772 2.853 0.124 -0.855 C11 V40 12 V40 C10 C11 C 0 1 N N N 23.550 15.456 34.948 4.050 -0.122 0.082 C10 V40 13 V40 C C12 C 0 1 N N N 29.089 15.933 39.354 -1.805 1.858 0.599 C V40 14 V40 N N2 N 0 1 N N N 30.242 15.822 38.349 -2.930 2.757 0.310 N V40 15 V40 H2 H2 H 0 1 N N N 25.349 16.976 38.179 0.555 1.339 -0.025 H2 V40 16 V40 H3 H3 H 0 1 N N N 24.627 15.331 38.220 0.365 0.475 -1.571 H3 V40 17 V40 H4 H4 H 0 1 N N N 25.496 17.417 34.937 1.812 0.572 1.675 H4 V40 18 V40 H5 H5 H 0 1 N N N 25.016 17.951 36.583 1.341 -1.153 1.791 H5 V40 19 V40 H6 H6 H 0 1 N N N 23.072 17.538 34.789 3.917 -0.459 2.236 H6 V40 20 V40 H7 H7 H 0 1 N N N 22.858 16.840 36.430 3.565 -1.910 1.243 H7 V40 21 V40 H8 H8 H 0 1 N N N 28.023 17.032 37.856 -2.141 0.732 -1.207 H8 V40 22 V40 H9 H9 H 0 1 N N N 25.294 14.536 39.703 -1.112 -1.479 -1.748 H9 V40 23 V40 H10 H10 H 0 1 N N N 26.814 13.590 39.554 -0.100 -2.309 -0.542 H10 V40 24 V40 H11 H11 H 0 1 N N N 27.206 14.698 37.683 -0.640 -0.551 1.121 H11 V40 25 V40 H12 H12 H 0 1 N N N 26.201 14.819 41.780 -2.357 -3.330 -0.665 H12 V40 26 V40 H13 H13 H 0 1 N N N 27.892 14.782 41.176 -2.078 -2.585 0.928 H13 V40 27 V40 H14 H14 H 0 1 N N N 27.785 16.963 41.763 -3.579 -1.301 -1.400 H14 V40 28 V40 H15 H15 H 0 1 N N N 26.006 17.061 41.529 -4.326 -2.005 0.054 H15 V40 29 V40 H16 H16 H 0 1 N N N 27.829 18.271 39.919 -3.108 -0.373 1.469 H16 V40 30 V40 H17 H17 H 0 1 N N N 26.194 17.755 39.382 -4.119 0.457 0.263 H17 V40 31 V40 H18 H18 H 0 1 N N N 24.739 13.586 37.241 3.427 1.959 -1.494 H18 V40 32 V40 H19 H19 H 0 1 N N N 25.269 14.197 35.107 3.018 -0.374 -1.811 H19 V40 33 V40 H20 H20 H 0 1 N N N 22.588 14.934 35.054 4.506 0.826 0.370 H20 V40 34 V40 H21 H21 H 0 1 N N N 23.835 15.489 33.886 4.785 -0.765 -0.403 H21 V40 35 V40 H22 H22 H 0 1 N N N 28.894 14.931 39.765 -1.758 1.669 1.672 H22 V40 36 V40 H23 H23 H 0 1 N N N 29.404 16.607 40.164 -0.875 2.322 0.271 H23 V40 37 V40 H24 H24 H 0 1 N N N 31.054 15.465 38.811 -2.821 3.638 0.789 H24 V40 38 V40 H25 H25 H 0 1 N N N 29.980 15.203 37.609 -3.035 2.896 -0.684 H25 V40 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V40 C10 C9 SING N N 1 V40 C10 C11 SING N N 2 V40 C9 C8 SING N N 3 V40 C11 N1 SING N N 4 V40 C11 O SING N N 5 V40 C8 N1 SING N N 6 V40 N1 C7 SING N N 7 V40 C7 C6 SING N N 8 V40 N C SING N N 9 V40 C6 C1 SING N N 10 V40 C6 C5 SING N N 11 V40 C1 C SING N N 12 V40 C1 C2 SING N N 13 V40 C5 C4 SING N N 14 V40 C2 C3 SING N N 15 V40 C4 C3 SING N N 16 V40 C7 H2 SING N N 17 V40 C7 H3 SING N N 18 V40 C8 H4 SING N N 19 V40 C8 H5 SING N N 20 V40 C9 H6 SING N N 21 V40 C9 H7 SING N N 22 V40 C1 H8 SING N N 23 V40 C5 H9 SING N N 24 V40 C5 H10 SING N N 25 V40 C6 H11 SING N N 26 V40 C4 H12 SING N N 27 V40 C4 H13 SING N N 28 V40 C3 H14 SING N N 29 V40 C3 H15 SING N N 30 V40 C2 H16 SING N N 31 V40 C2 H17 SING N N 32 V40 O H18 SING N N 33 V40 C11 H19 SING N N 34 V40 C10 H20 SING N N 35 V40 C10 H21 SING N N 36 V40 C H22 SING N N 37 V40 C H23 SING N N 38 V40 N H24 SING N N 39 V40 N H25 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V40 SMILES ACDLabs 12.01 NCC1CCCCC1CN1CCCC1O V40 InChI InChI 1.06 "InChI=1S/C12H24N2O/c13-8-10-4-1-2-5-11(10)9-14-7-3-6-12(14)15/h10-12,15H,1-9,13H2/t10-,11-,12-/m0/s1" V40 InChIKey InChI 1.06 ITLMVPHXKPDLDM-SRVKXCTJSA-N V40 SMILES_CANONICAL CACTVS 3.385 "NC[C@@H]1CCCC[C@H]1CN2CCC[C@@H]2O" V40 SMILES CACTVS 3.385 "NC[CH]1CCCC[CH]1CN2CCC[CH]2O" V40 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1CC[C@H]([C@@H](C1)CN)CN2CCC[C@@H]2O" V40 SMILES "OpenEye OEToolkits" 2.0.7 "C1CCC(C(C1)CN)CN2CCCC2O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier V40 "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-1-{[(1R,2R)-2-(aminomethyl)cyclohexyl]methyl}pyrrolidin-2-ol" V40 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-1-[[(1~{R},2~{R})-2-(aminomethyl)cyclohexyl]methyl]pyrrolidin-2-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V40 "Create component" 2022-08-29 RCSB V40 "Initial release" 2022-11-02 RCSB #