data_V44 # _chem_comp.id V44 _chem_comp.name "S-[2,2-bis(1-methyl-1H-imidazol-2-yl)ethyl]-L-cysteine" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C13 H19 N5 O2 S" _chem_comp.mon_nstd_parent_comp_id CYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-06-23 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 309.387 _chem_comp.one_letter_code C _chem_comp.three_letter_code V44 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6XJ5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V44 C C C 0 1 N N N Y N Y -6.025 5.780 -63.934 -5.196 -0.506 -0.371 C V44 1 V44 O O O 0 1 N N N Y N Y -4.807 5.777 -63.775 -5.841 -1.296 0.277 O V44 2 V44 N N N 0 1 N N N Y Y N -6.645 7.523 -62.312 -4.049 0.056 1.696 N V44 3 V44 N1 N1 N 0 1 Y N N N N N -8.875 7.723 -70.499 2.876 -1.317 -1.432 N1 V44 4 V44 C1 C1 C 0 1 Y N N N N N -8.781 8.451 -69.314 2.571 -1.081 -0.185 C1 V44 5 V44 C2 C2 C 0 1 Y N N N N N -10.183 7.771 -70.985 3.934 -2.141 -1.480 C2 V44 6 V44 C3 C3 C 0 1 Y N N N N N -10.916 8.551 -70.108 4.297 -2.427 -0.215 C3 V44 7 V44 C4 C4 C 0 1 N N N N N N -10.460 9.818 -67.955 3.441 -1.765 2.072 C4 V44 8 V44 C5 C5 C 0 1 Y N N N N N -6.217 8.360 -68.952 1.647 1.199 -0.221 C5 V44 9 V44 C6 C6 C 0 1 Y N N N N N -4.442 7.536 -70.124 1.898 2.873 -1.560 C6 V44 10 V44 C7 C7 C 0 1 Y N N N N N -3.938 8.286 -69.073 1.950 3.365 -0.307 C7 V44 11 V44 C8 C8 C 0 1 N N N N N N -4.907 9.664 -67.176 1.772 2.357 2.006 C8 V44 12 V44 N2 N2 N 0 1 Y N N N N N -10.045 8.965 -69.084 3.433 -1.755 0.607 N2 V44 13 V44 C9 C9 C 0 1 N N N N N N -7.594 8.630 -68.401 1.443 -0.203 0.292 C9 V44 14 V44 C10 C10 C 0 1 N N N N N N -7.703 7.720 -67.149 0.114 -0.750 -0.232 C10 V44 15 V44 N3 N3 N 0 1 Y N N N N N -5.841 7.599 -70.054 1.710 1.548 -1.477 N3 V44 16 V44 N4 N4 N 0 1 Y N N N N N -5.038 8.794 -68.359 1.789 2.304 0.542 N4 V44 17 V44 CA CA C 0 1 N N R Y N N -6.829 7.051 -63.676 -3.979 0.147 0.231 CA V44 18 V44 CB CB C 0 1 N N N N N N -6.479 8.187 -64.617 -2.719 -0.567 -0.264 CB V44 19 V44 SG SG S 0 1 N N N N N N -7.974 8.625 -65.594 -1.254 0.219 0.461 SG V44 20 V44 H2 H2 H 0 1 N Y N Y Y N -6.870 6.789 -61.671 -4.083 -0.906 1.997 H2 V44 21 V44 H H3 H 0 1 N N N Y Y N -5.693 7.799 -62.181 -3.277 0.543 2.126 H3 V44 22 V44 H5 H5 H 0 1 N N N N N N -10.553 7.290 -71.878 4.410 -2.511 -2.376 H5 V44 23 V44 H6 H6 H 0 1 N N N N N N -11.964 8.797 -70.194 5.113 -3.065 0.092 H6 V44 24 V44 H7 H7 H 0 1 N N N N N N -9.599 9.998 -67.295 2.812 -2.578 2.433 H7 V44 25 V44 H8 H8 H 0 1 N N N N N N -10.835 10.778 -68.339 4.461 -1.910 2.428 H8 V44 26 V44 H9 H9 H 0 1 N N N N N N -11.257 9.314 -67.388 3.058 -0.815 2.444 H9 V44 27 V44 H10 H10 H 0 1 N N N N N N -3.863 7.001 -70.862 1.989 3.446 -2.471 H10 V44 28 V44 H11 H11 H 0 1 N N N N N N -2.895 8.450 -68.845 2.092 4.398 -0.027 H11 V44 29 V44 H12 H12 H 0 1 N N N N N N -5.907 9.925 -66.800 2.786 2.228 2.386 H12 V44 30 V44 H13 H13 H 0 1 N N N N N N -4.347 9.134 -66.391 1.383 3.322 2.330 H13 V44 31 V44 H14 H14 H 0 1 N N N N N N -4.368 10.582 -67.454 1.135 1.560 2.391 H14 V44 32 V44 H15 H15 H 0 1 N N N N N N -7.608 9.670 -68.043 1.427 -0.192 1.382 H15 V44 33 V44 H16 H16 H 0 1 N N N N N N -8.545 7.028 -67.297 0.095 -0.678 -1.320 H16 V44 34 V44 H17 H17 H 0 1 N N N N N N -6.769 7.146 -67.057 0.008 -1.793 0.065 H17 V44 35 V44 HA H18 H 0 1 N N N Y N N -7.892 6.809 -63.822 -3.944 1.194 -0.067 H18 V44 36 V44 H19 H19 H 0 1 N N N N N N -5.673 7.871 -65.295 -2.755 -1.615 0.034 H19 V44 37 V44 H20 H20 H 0 1 N N N N N N -6.148 9.060 -64.036 -2.667 -0.500 -1.351 H20 V44 38 V44 OXT OXT O 0 1 N Y N Y N Y ? ? ? -5.560 -0.215 -1.630 OXT V44 39 V44 HXT HXT H 0 1 N Y N Y N Y ? ? ? -6.345 -0.662 -1.974 HXT V44 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V44 C2 N1 SING Y N 1 V44 C2 C3 DOUB Y N 2 V44 N1 C1 DOUB Y N 3 V44 C6 N3 SING Y N 4 V44 C6 C7 DOUB Y N 5 V44 C3 N2 SING Y N 6 V44 N3 C5 DOUB Y N 7 V44 C1 N2 SING Y N 8 V44 C1 C9 SING N N 9 V44 N2 C4 SING N N 10 V44 C7 N4 SING Y N 11 V44 C5 C9 SING N N 12 V44 C5 N4 SING Y N 13 V44 C9 C10 SING N N 14 V44 N4 C8 SING N N 15 V44 C10 SG SING N N 16 V44 SG CB SING N N 17 V44 CB CA SING N N 18 V44 C O DOUB N N 19 V44 C CA SING N N 20 V44 CA N SING N N 21 V44 N H2 SING N N 22 V44 N H SING N N 23 V44 C2 H5 SING N N 24 V44 C3 H6 SING N N 25 V44 C4 H7 SING N N 26 V44 C4 H8 SING N N 27 V44 C4 H9 SING N N 28 V44 C6 H10 SING N N 29 V44 C7 H11 SING N N 30 V44 C8 H12 SING N N 31 V44 C8 H13 SING N N 32 V44 C8 H14 SING N N 33 V44 C9 H15 SING N N 34 V44 C10 H16 SING N N 35 V44 C10 H17 SING N N 36 V44 CA HA SING N N 37 V44 CB H19 SING N N 38 V44 CB H20 SING N N 39 V44 C OXT SING N N 40 V44 OXT HXT SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V44 SMILES ACDLabs 12.01 "C(=O)(C(N)CSCC(c1nccn1C)c2n(ccn2)C)O" V44 InChI InChI 1.03 "InChI=1S/C13H19N5O2S/c1-17-5-3-15-11(17)9(12-16-4-6-18(12)2)7-21-8-10(14)13(19)20/h3-6,9-10H,7-8,14H2,1-2H3,(H,19,20)/t10-/m0/s1" V44 InChIKey InChI 1.03 JSRXQYXKAMXSOP-JTQLQIEISA-N V44 SMILES_CANONICAL CACTVS 3.385 "Cn1ccnc1C(CSC[C@H](N)C(O)=O)c2nccn2C" V44 SMILES CACTVS 3.385 "Cn1ccnc1C(CSC[CH](N)C(O)=O)c2nccn2C" V44 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1ccnc1C(CSC[C@@H](C(=O)O)N)c2nccn2C" V44 SMILES "OpenEye OEToolkits" 2.0.7 "Cn1ccnc1C(CSCC(C(=O)O)N)c2nccn2C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier V44 "SYSTEMATIC NAME" ACDLabs 12.01 "S-[2,2-bis(1-methyl-1H-imidazol-2-yl)ethyl]-L-cysteine" V44 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R})-2-azanyl-3-[2,2-bis(1-methylimidazol-2-yl)ethylsulfanyl]propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V44 "Create component" 2020-06-23 RCSB V44 "Initial release" 2021-06-30 RCSB V44 "Modify backbone" 2023-11-03 PDBE #