data_V46
#
_chem_comp.id V46
_chem_comp.name "(1S,2S)-2-[(N-{[(3-chlorophenyl)methoxy]carbonyl}-L-leucyl)amino]-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H30 Cl N3 O8 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-01-19
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 519.996
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code V46
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7TIU
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
V46 C1 C1 C 0 1 Y N N N N N 10.026 -4.393 21.655 5.922 -1.089 0.211 C1 V46 1
V46 C12 C2 C 0 1 N N S N N N 7.486 0.052 23.371 -0.019 0.126 0.596 C12 V46 2
V46 C13 C3 C 0 1 N N N N N N 7.623 1.117 24.461 -0.128 1.544 1.161 C13 V46 3
V46 C14 C4 C 0 1 N N N N N N 6.799 0.674 25.666 0.885 1.721 2.293 C14 V46 4
V46 C15 C5 C 0 1 N N N N N N 7.074 1.648 26.811 0.863 3.173 2.774 C15 V46 5
V46 C16 C6 C 0 1 N N N N N N 5.309 0.672 25.327 0.519 0.794 3.454 C16 V46 6
V46 C17 C7 C 0 1 N N N N N N 8.265 0.538 22.153 -1.097 -0.089 -0.434 C17 V46 7
V46 C2 C8 C 0 1 Y N N N N N 10.902 -3.313 21.601 6.750 0.004 0.035 C2 V46 8
V46 C20 C9 C 0 1 N N S N N N 8.210 1.508 19.918 -3.443 -0.186 -1.088 C20 V46 9
V46 C21 C10 C 0 1 N N S N N N 7.896 2.996 19.785 -3.717 1.129 -1.821 C21 V46 10
V46 C24 C11 C 0 1 N N N N N N 7.697 0.734 18.702 -4.722 -0.661 -0.396 C24 V46 11
V46 C25 C12 C 0 1 N N S N N N 8.239 -0.729 18.791 -4.485 -2.041 0.222 C25 V46 12
V46 C26 C13 C 0 1 N N N N N N 9.712 -0.728 18.669 -4.224 -3.091 -0.882 C26 V46 13
V46 C27 C14 C 0 1 N N N N N N 9.992 -2.064 17.979 -4.929 -4.338 -0.305 C27 V46 14
V46 C29 C15 C 0 1 N N N N N N 7.711 -1.561 17.652 -5.736 -2.531 0.916 C29 V46 15
V46 C3 C16 C 0 1 Y N N N N N 11.914 -3.289 20.647 7.909 -0.120 -0.710 C3 V46 16
V46 C4 C17 C 0 1 Y N N N N N 12.053 -4.338 19.745 8.239 -1.337 -1.279 C4 V46 17
V46 C5 C18 C 0 1 Y N N N N N 11.178 -5.415 19.798 7.410 -2.429 -1.102 C5 V46 18
V46 C6 C19 C 0 1 Y N N N N N 10.167 -5.442 20.752 6.255 -2.307 -0.353 C6 V46 19
V46 C7 C20 C 0 1 N N N N N N 8.902 -4.441 22.693 4.659 -0.955 1.022 C7 V46 20
V46 C9 C21 C 0 1 N N N N N N 8.123 -2.281 23.069 2.355 -0.408 0.725 C9 V46 21
V46 CL CL1 CL 0 0 N N N N N N 12.977 -1.979 20.582 8.948 1.253 -0.932 CL V46 22
V46 N11 N1 N 0 1 N N N N N N 8.011 -1.212 23.864 1.295 -0.052 -0.027 N11 V46 23
V46 N19 N2 N 0 1 N N N N N N 7.567 1.010 21.120 -2.394 0.023 -0.086 N19 V46 24
V46 N28 N3 N 0 1 N N N N N N 8.699 -2.328 17.182 -5.965 -3.819 0.597 N28 V46 25
V46 O10 O1 O 0 1 N N N N N N 7.568 -2.324 22.010 2.221 -0.582 1.920 O10 V46 26
V46 O18 O2 O 0 1 N N N N N N 9.471 0.495 22.141 -0.798 -0.364 -1.577 O18 V46 27
V46 O22 O3 O 0 1 N N N N N N 8.589 3.542 18.694 -4.818 0.955 -2.715 O22 V46 28
V46 O30 O4 O 0 1 N N N N N N 6.586 -1.541 17.242 -6.431 -1.862 1.651 O30 V46 29
V46 O8 O5 O 0 1 N N N N N N 8.875 -3.288 23.486 3.563 -0.571 0.151 O8 V46 30
V46 H1 H1 H 0 1 N N N N N N 6.425 -0.056 23.103 -0.138 -0.597 1.403 H1 V46 31
V46 H2 H2 H 0 1 N N N N N N 8.679 1.221 24.750 0.079 2.266 0.371 H2 V46 32
V46 H3 H3 H 0 1 N N N N N N 7.249 2.082 24.088 -1.135 1.705 1.545 H3 V46 33
V46 H4 H4 H 0 1 N N N N N N 7.106 -0.339 25.967 1.882 1.474 1.931 H4 V46 34
V46 H5 H5 H 0 1 N N N N N N 6.490 1.350 27.695 -0.135 3.421 3.137 H5 V46 35
V46 H6 H6 H 0 1 N N N N N N 8.146 1.631 27.057 1.584 3.300 3.581 H6 V46 36
V46 H7 H7 H 0 1 N N N N N N 6.784 2.664 26.505 1.123 3.834 1.947 H7 V46 37
V46 H8 H8 H 0 1 N N N N N N 4.733 0.350 26.207 0.535 -0.241 3.112 H8 V46 38
V46 H9 H9 H 0 1 N N N N N N 4.998 1.686 25.036 1.241 0.920 4.261 H9 V46 39
V46 H10 H10 H 0 1 N N N N N N 5.124 -0.022 24.494 -0.479 1.041 3.817 H10 V46 40
V46 H11 H11 H 0 1 N N N N N N 10.796 -2.495 22.298 6.491 0.954 0.479 H11 V46 41
V46 H12 H12 H 0 1 N N N N N N 9.300 1.377 19.992 -3.115 -0.940 -1.804 H12 V46 42
V46 H13 H13 H 0 1 N N N N N N 6.938 3.394 20.150 -2.832 1.421 -2.386 H13 V46 43
V46 H15 H15 H 0 1 N N N N N N 8.058 1.210 17.778 -4.995 0.046 0.387 H15 V46 44
V46 H16 H16 H 0 1 N N N N N N 6.597 0.724 18.703 -5.528 -0.724 -1.127 H16 V46 45
V46 H17 H17 H 0 1 N N N N N N 7.935 -1.170 19.751 -3.649 -2.006 0.921 H17 V46 46
V46 H18 H18 H 0 1 N N N N N N 10.192 -0.684 19.658 -4.679 -2.787 -1.825 H18 V46 47
V46 H19 H19 H 0 1 N N N N N N 10.059 0.116 18.055 -3.155 -3.269 -1.007 H19 V46 48
V46 H20 H20 H 0 1 N N N N N N 10.169 -2.860 18.718 -5.383 -4.920 -1.106 H20 V46 49
V46 H21 H21 H 0 1 N N N N N N 10.860 -1.987 17.308 -4.218 -4.951 0.249 H21 V46 50
V46 H22 H22 H 0 1 N N N N N N 12.839 -4.315 19.005 9.141 -1.433 -1.865 H22 V46 51
V46 H23 H23 H 0 1 N N N N N N 11.283 -6.231 19.099 7.668 -3.379 -1.546 H23 V46 52
V46 H24 H24 H 0 1 N N N N N N 9.488 -6.281 20.792 5.608 -3.160 -0.215 H24 V46 53
V46 H25 H25 H 0 1 N N N N N N 7.939 -4.536 22.170 4.429 -1.909 1.497 H25 V46 54
V46 H26 H26 H 0 1 N N N N N N 9.054 -5.316 23.342 4.799 -0.192 1.788 H26 V46 55
V46 H27 H27 H 0 1 N N N N N N 8.295 -1.283 24.820 1.402 0.088 -0.981 H27 V46 56
V46 H28 H28 H 0 1 N N N N N N 6.569 1.021 21.175 -2.634 0.243 0.828 H28 V46 57
V46 H29 H29 H 0 1 N N N N N N 8.613 -2.977 16.426 -6.716 -4.339 0.923 H29 V46 58
V46 H30 H30 H 0 1 N N N N N N 8.387 4.467 18.621 -5.641 0.693 -2.280 H30 V46 59
V46 S1 S1 S 0 1 N Y N N N N ? ? ? -4.118 2.422 -0.613 S1 V46 60
V46 O3 O6 O 0 1 N Y N N N N ? ? ? -5.314 2.099 0.084 O3 V46 61
V46 O1 O7 O 0 1 N Y N N N N ? ? ? -2.951 2.831 0.086 O1 V46 62
V46 O2 O8 O 0 1 N Y N N N N ? ? ? -4.491 3.630 -1.460 O2 V46 63
V46 H14 H14 H 0 1 N Y N N N N ? ? ? -4.734 4.412 -0.945 H14 V46 64
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
V46 N28 C29 SING N N 1
V46 N28 C27 SING N N 2
V46 O30 C29 DOUB N N 3
V46 C29 C25 SING N N 4
V46 C27 C26 SING N N 5
V46 C26 C25 SING N N 6
V46 O22 C21 SING N N 7
V46 C24 C25 SING N N 8
V46 C24 C20 SING N N 9
V46 C4 C5 DOUB Y N 10
V46 C4 C3 SING Y N 11
V46 C21 C20 SING N N 12
V46 C5 C6 SING Y N 13
V46 C20 N19 SING N N 14
V46 CL C3 SING N N 15
V46 C3 C2 DOUB Y N 16
V46 C6 C1 DOUB Y N 17
V46 N19 C17 SING N N 18
V46 C2 C1 SING Y N 19
V46 C1 C7 SING N N 20
V46 O10 C9 DOUB N N 21
V46 O18 C17 DOUB N N 22
V46 C17 C12 SING N N 23
V46 C7 O8 SING N N 24
V46 C9 O8 SING N N 25
V46 C9 N11 SING N N 26
V46 C12 N11 SING N N 27
V46 C12 C13 SING N N 28
V46 C13 C14 SING N N 29
V46 C16 C14 SING N N 30
V46 C14 C15 SING N N 31
V46 C12 H1 SING N N 32
V46 C13 H2 SING N N 33
V46 C13 H3 SING N N 34
V46 C14 H4 SING N N 35
V46 C15 H5 SING N N 36
V46 C15 H6 SING N N 37
V46 C15 H7 SING N N 38
V46 C16 H8 SING N N 39
V46 C16 H9 SING N N 40
V46 C16 H10 SING N N 41
V46 C2 H11 SING N N 42
V46 C20 H12 SING N N 43
V46 C21 H13 SING N N 44
V46 C24 H15 SING N N 45
V46 C24 H16 SING N N 46
V46 C25 H17 SING N N 47
V46 C26 H18 SING N N 48
V46 C26 H19 SING N N 49
V46 C27 H20 SING N N 50
V46 C27 H21 SING N N 51
V46 C4 H22 SING N N 52
V46 C5 H23 SING N N 53
V46 C6 H24 SING N N 54
V46 C7 H25 SING N N 55
V46 C7 H26 SING N N 56
V46 N11 H27 SING N N 57
V46 N19 H28 SING N N 58
V46 N28 H29 SING N N 59
V46 O22 H30 SING N N 60
V46 C21 S1 SING N N 61
V46 S1 O3 DOUB N N 62
V46 S1 O1 DOUB N N 63
V46 S1 O2 SING N N 64
V46 O2 H14 SING N N 65
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
V46 SMILES ACDLabs 12.01 "CC(C)CC(NC(=O)OCc1cccc(Cl)c1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O"
V46 InChI InChI 1.03 "InChI=1S/C21H30ClN3O8S/c1-12(2)8-16(25-21(29)33-11-13-4-3-5-15(22)9-13)19(27)24-17(20(28)34(30,31)32)10-14-6-7-23-18(14)26/h3-5,9,12,14,16-17,20,28H,6-8,10-11H2,1-2H3,(H,23,26)(H,24,27)(H,25,29)(H,30,31,32)/t14-,16-,17-,20-/m0/s1"
V46 InChIKey InChI 1.03 YPCVDTHFTGPBJP-VERUCKTNSA-N
V46 SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OCc1cccc(Cl)c1)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@@H](O)[S](O)(=O)=O"
V46 SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OCc1cccc(Cl)c1)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O"
V46 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@H](O)S(=O)(=O)O)NC(=O)OCc2cccc(c2)Cl"
V46 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCc2cccc(c2)Cl"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
V46 "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,2S)-2-[(N-{[(3-chlorophenyl)methoxy]carbonyl}-L-leucyl)amino]-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid"
V46 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S})-2-[[(2~{S})-2-[(3-chlorophenyl)methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
V46 "Create component" 2022-01-19 RCSB
V46 "Initial release" 2022-05-04 RCSB
V46 "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id V46
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom C21
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#