data_V4F # _chem_comp.id V4F _chem_comp.name "8-(aminomethyl)-4-(phosphonomethoxy)quinoline-2-carboxylic acid" _chem_comp.type "peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C12 H13 N2 O6 P" _chem_comp.mon_nstd_parent_comp_id V4F _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-02-21 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 312.215 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V4F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8CMN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V4F C C C 0 1 N N N Y N Y -7.793 -19.286 20.362 0.544 2.982 -0.344 C V4F 1 V4F CAF CAF C 0 1 Y N N N N N -10.313 -21.748 19.280 -0.356 -0.638 -0.780 CAF V4F 2 V4F CAD CAD C 0 1 Y N N N N N -9.387 -21.112 20.101 -0.462 0.739 -0.718 CAD V4F 3 V4F CAE CA C 0 1 Y N N Y N N -8.806 -19.926 19.645 0.667 1.506 -0.408 CA V4F 4 V4F CAL CAL C 0 1 Y N N N N N -10.681 -21.170 18.079 0.905 -1.220 -0.518 CAL V4F 5 V4F CAM CAM C 0 1 Y N N Y N N -10.060 -20.007 17.659 2.003 -0.376 -0.211 CAM V4F 6 V4F CAJ CAJ C 0 1 Y N N Y N N -10.410 -19.452 16.432 3.258 -0.958 0.049 CAJ V4F 7 V4F CAK CAK C 0 1 Y N N N N N -11.375 -20.077 15.649 3.399 -2.310 0.002 CAK V4F 8 V4F CAG CAG C 0 1 Y N N N N N -11.994 -21.244 16.069 2.317 -3.135 -0.299 CAG V4F 9 V4F CAI CAI C 0 1 Y N N N N N -11.642 -21.790 17.293 1.087 -2.609 -0.557 CAI V4F 10 V4F C01 C01 C 0 1 N N N N N N -10.862 -23.471 20.871 -2.691 -0.744 -1.201 C01 V4F 11 V4F CA CAE C 0 1 N N N Y N N -9.819 -18.274 15.973 4.442 -0.085 0.377 CAE V4F 12 V4F NAH NAH N 0 1 Y N N Y N N -9.105 -19.457 18.421 1.839 0.947 -0.172 NAH V4F 13 V4F N N N 0 1 N N N Y Y N -9.508 -17.408 17.116 4.378 0.317 1.789 N V4F 14 V4F O O O 0 1 N N N Y N Y -7.595 -19.563 21.544 -0.527 3.511 -0.559 O V4F 15 V4F O01 O01 O 0 1 N N N N N N -11.032 -22.865 19.587 -1.432 -1.408 -1.078 O01 V4F 16 V4F O3 O3 O 0 1 N N N N N N -10.447 -25.929 21.401 -4.814 0.272 0.326 O3 V4F 17 V4F O2 O2 O 0 1 N N N N N N -12.771 -24.999 21.614 -3.393 -1.690 1.346 O2 V4F 18 V4F O1 O1 O 0 1 N N N N N N -11.711 -25.348 19.393 -2.443 0.637 1.111 O1 V4F 19 V4F P P P 0 1 N N N N N N -11.537 -25.109 20.828 -3.335 -0.348 0.458 P V4F 20 V4F HAD HAD H 0 1 N N N N N N -9.125 -21.524 21.064 -1.410 1.220 -0.908 HAD V4F 21 V4F HAK HAK H 0 1 N N N N N N -11.647 -19.645 14.697 4.364 -2.751 0.203 HAK V4F 22 V4F HAG HAG H 0 1 N N N N N N -12.740 -21.721 15.451 2.456 -4.206 -0.330 HAG V4F 23 V4F HAI HAI H 0 1 N N N N N N -12.116 -22.698 17.635 0.257 -3.259 -0.790 HAI V4F 24 V4F H3 H3 H 0 1 N N N N N N -9.791 -23.520 21.117 -2.562 0.177 -1.770 H3 V4F 25 V4F HA1 H4 H 0 1 N N N Y N N -8.892 -18.515 15.432 5.363 -0.640 0.199 H4 V4F 26 V4F HA2 H5 H 0 1 N N N Y N N -10.514 -17.754 15.297 4.425 0.803 -0.254 H5 V4F 27 V4F H H H 0 1 N N N Y Y N -9.084 -16.563 16.789 5.162 0.903 2.034 H V4F 28 V4F H2 H2 H 0 1 N Y N Y Y N -10.351 -17.190 17.608 3.504 0.777 1.994 H2 V4F 29 V4F HPO3 HPO3 H 0 0 N N N N N N -10.060 -26.464 20.718 -5.219 0.507 1.172 HPO3 V4F 30 V4F HPO2 HPO2 H 0 0 N N N N N N -13.522 -25.105 21.042 -4.018 -2.351 1.018 HPO2 V4F 31 V4F OXT OXT O 0 1 N Y N Y N Y -7.056 -18.440 19.606 1.619 3.734 -0.042 O4 V4F 32 V4F H1 H1 H 0 1 N N N N N N -11.387 -22.875 21.633 -3.396 -1.395 -1.718 H1 V4F 33 V4F HXT HXT H 0 1 N Y N Y N Y -6.348 -18.082 20.129 1.489 4.692 -0.008 H6 V4F 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V4F CAK CAG DOUB Y N 1 V4F CAK CAJ SING Y N 2 V4F CA CAJ SING N N 3 V4F CA N SING N N 4 V4F CAG CAI SING Y N 5 V4F CAJ CAM DOUB Y N 6 V4F CAI CAL DOUB Y N 7 V4F CAM CAL SING Y N 8 V4F CAM NAH SING Y N 9 V4F CAL CAF SING Y N 10 V4F NAH CAE DOUB Y N 11 V4F CAF O01 SING N N 12 V4F CAF CAD DOUB Y N 13 V4F O1 P DOUB N N 14 V4F O01 C01 SING N N 15 V4F CAE CAD SING Y N 16 V4F CAE C SING N N 17 V4F C O DOUB N N 18 V4F P C01 SING N N 19 V4F P O3 SING N N 20 V4F P O2 SING N N 21 V4F CAD HAD SING N N 22 V4F CAK HAK SING N N 23 V4F CAG HAG SING N N 24 V4F CAI HAI SING N N 25 V4F C01 H3 SING N N 26 V4F CA HA1 SING N N 27 V4F CA HA2 SING N N 28 V4F N H SING N N 29 V4F N H2 SING N N 30 V4F O3 HPO3 SING N N 31 V4F O2 HPO2 SING N N 32 V4F C OXT SING N N 33 V4F C01 H1 SING N N 34 V4F OXT HXT SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V4F InChI InChI 1.06 "InChI=1S/C12H13N2O6P/c13-5-7-2-1-3-8-10(20-6-21(17,18)19)4-9(12(15)16)14-11(7)8/h1-4H,5-6,13H2,(H,15,16)(H2,17,18,19)" V4F InChIKey InChI 1.06 OQLWCJHMUOMQIW-UHFFFAOYSA-N V4F SMILES_CANONICAL CACTVS 3.385 "NCc1cccc2c(OC[P](O)(O)=O)cc(nc12)C(O)=O" V4F SMILES CACTVS 3.385 "NCc1cccc2c(OC[P](O)(O)=O)cc(nc12)C(O)=O" V4F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c2c(c1)c(cc(n2)C(=O)O)OCP(=O)(O)O)CN" V4F SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c2c(c1)c(cc(n2)C(=O)O)OCP(=O)(O)O)CN" # _pdbx_chem_comp_identifier.comp_id V4F _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "8-(aminomethyl)-4-(phosphonomethoxy)quinoline-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V4F "Create component" 2023-02-21 PDBE V4F "Modify leaving atom flag" 2023-03-14 PDBE V4F "Modify descriptor" 2023-03-23 PDBE V4F "Initial release" 2023-07-19 RCSB V4F "Modify linking type" 2023-08-10 PDBE V4F "Modify backbone" 2023-11-03 PDBE #